BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485749
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53630.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1557 0.0
AT4G18692.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 268 6e-71
AT3G53342.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 257 1e-67
AT1G55710.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 248 7e-65
> AT3G53630.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G18692.1);
Has 42 Blast hits to 42 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19883879-19885904
FORWARD LENGTH=1028
Length=1028
Score = 1557 bits (843), Expect = 0.0
Identities = 977/1036 (94%), Gaps = 31/1036 (3%)
Strand=Plus/Plus
Query 1 CTTTCCTATCCCTAAAACCCGAGACCGAG-AGT-ATCTTCT--TCTTAGGGTagaagaag 56
|||||||||||||||||||||||| ||| | | |||||| |||||||||||||||||
Sbjct 1 CTTTCCTATCCCTAAAACCCGAGA--GAGCA-TCTTCTTCTCCTCTTAGGGTAGAAGAAG 57
Query 57 gacg-aaatcgaaggaggaggaagaagaaga-aga-TCGATTCT-TGATCAACGATGAGC 112
|||| ||||| |||||||||||||||||| || |||||| | |||||||||||||||
Sbjct 58 GACGAAAATC---GGAGGAGGAAGAAGAAGATCGATTCGATT-TGTGATCAACGATGAGC 113
Query 113 TCCTTCAATGGAAACAGCAACATCGACAACATCCTAATCCAAACCCTACTTGGACGTCTC 172
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 114 TCCTTCAATGGAAACAGCAACATCGACAACCTCCTAATCCAAACCCTACTTGGACGTCTC 173
Query 173 CAAATCCGTCCCCCTAACTCTCATTTCCTCTCTCAATCCCTAGATGACCTCCTCTTCAAA 232
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 174 CAAATTCGTCCCCCTAACTCTCATTTCCTCTCTCAATCCCTAGACGACCTCCTCTTCAAA 233
Query 233 TCCGACGACAGCGACGGCGATGATGACGGAGAAGGTCAGACCAGTCTCGACAGAGAAGAA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TCCGACGACAGCGACGGCGATGATGACGGAGAAGGTCAGACCAGTCTCGACAGAGAAGAA 293
Query 293 GCTAGGCTTGAGAAAGAGCTAATCCGAGTCATCGTCTCTGGTCGAAGCGATTCTCTTAAG 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 294 GCTAGGCTTGAGAAAGAGCTAATCCGAGTCATCGTCTCTGGTCGAAGCGATTCTCTCAAG 353
Query 353 CCGAATTCAGGTCAAGCCGTGACAGTCAACGAACACCACATCTGCGTTGGGTTTCACGAG 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 354 CCGAATTCAGGTCAAGCCGTGACAGTCAACGAACACCACATCTGCGTTGGGTTTCATGAG 413
Query 413 GATGAAGAATCGGATTATCGTGTTTGGGAGTGGCATGGTCATATCATGTTGTTCGATGAA 472
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 414 GATGAGGAATCGGATTATCGTGTTTGGGAGTGGCATGGTCATATCATGTTGTTTGATGAA 473
Query 473 GAGAATGGGTACACGCCTGAGTATATCTACGGGAATTACTTCGAGAGGTTGCCTGTGAAG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GAGAATGGGTACACGCCTGAGTATATCTACGGGAATTACTTCGAGAGGTTGCCTGTGAAG 533
Query 533 CTTCCTAAT--C-GCCGTGTagagaaggagaagaaggagg---tgaaagaggaggaggtg 586
||||||||| | ||||||| ||||||||||||||| ||| ||||||| |||||||||
Sbjct 534 CTTCCTAATAACCGCCGTGTGGAGAAGGAGAAGAAGAAGGAGATGAAAGAAGAGGAGGTG 593
Query 587 gagaaTTTGGGGCTTAGAGAGTTGATCGATGGTGGAGACGCTGCTCGTGGTAGGATTCTT 646
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 594 GAGAATTTGGGGCTTAGAGAGTTGATCGATGGTGGTGACGCTGCTCCTGGTAGGATTCTT 653
Query 647 CATAGGAACAACATCAACATCGGTTCCTCAAGGGTCTAAGTTCCTAAGAGCGTCTTGCCA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 654 CATAGGAACAACATCAACATCGGTTCCTCAAGGGTCTAAGTTCCTAAGAGCGTCTTGGTA 713
Query 707 GGGAGAGGTCACATTGTTCGGGAAGATTTCAGATGTGTGAACAACTCGCGACAACAAAAC 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GGGAGAGGTCACATTGTTCGGGAAGATTTCAGATGTGTGAACAACTCGCGACAACAAAAC 773
Query 767 ATAAGGTGCTGGTGAATCTACGGGTTCTATTCCGTTCTATTTGAACCGGGAAATCCATGG 826
|||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 774 ATAAGGTGCTGGTGGGTCTACGGGTTCTATTCCGTTTTATTTAAACCGGGAAATCCATGG 833
Query 827 GTGAATCTGTTTTCTTTAAGAAATTCATCTGAAGTTGTTTCTGAACCAAATTTACAATAC 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GTGAATCTGTTTTCTTTAAGAAATTCATCTGAAGTTGTTTCTGAACCAAATTTACAATAC 893
Query 887 ATGTTGATGAAGAGAGTAAAGATTACAATACATGGTCATCGAACTCAGAAGCTTTC---- 942
||||| |||||||||| |||||||||||| |||||||||||||||| |||||||||
Sbjct 894 ATGTTAATGAAGAGAGAAAAGATTACAATGCATGGTCATCGAACTCGGAAGCTTTCAAGT 953
Query 943 --CC--ATGTTTGTTTATTTTGTGTCCTTCGCTC-GAAATCATATGTTTTGCTCATTTTA 997
|| ||||||||||||||||||| ||| || ||| |||||||||||||||||||||
Sbjct 954 TTCCCCATGTTTGTTTATTTTGTGTTCTTAAATCAGAA-TCATATGTTTTGCTCATTTTA 1012
Query 998 CAATTCTGCTTTCGAT 1013
||||||||||||||||
Sbjct 1013 CAATTCTGCTTTCGAT 1028
> AT4G18692.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G53342.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:10284401-10284667 FORWARD LENGTH=267
Length=267
Score = 268 bits (145), Expect = 6e-71
Identities = 172/184 (93%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 502 CGGGAATTACTTCGAGAGGTTGCCTGTGAAGCTTCCTAAT---CGCCGTGTagagaa-g- 556
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |
Sbjct 60 CGGGAATTACTTCGAGAGGTTGCCTGTGAAGCTTCCTAATAACCGCCATGTGGAGAAGGA 119
Query 557 g-agaagaaggaggtgaaagaggaggaggtggagaaTTTGGGGCTTAGAGAGTTGATCGA 615
| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 120 GAAGAAGAAGGAGGTGAAAGAAGAGGAGGTGGAGAATTGGGGGCTTAGAGAGTTGATCGA 179
Query 616 TGGTGGAGACGCTGCTCGTGGTAGGATTCTTCATAGGAACAACATCAACATCGGTTCCTC 675
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGGTGGTGACGCTGCTCCTGGTAGGATTCTTCATAGGAACAACATCAACATCGGTTCCTC 239
Query 676 AAGG 679
||||
Sbjct 240 AAGG 243
> AT3G53342.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G18692.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr3:19777087-19777353 FORWARD LENGTH=267
Length=267
Score = 257 bits (139), Expect = 1e-67
Identities = 170/184 (92%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 502 CGGGAATTACTTCGAGAGGTTGCCTGTGAAGCTTCCTAAT---CGCCGTGTagagaa-g- 556
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |
Sbjct 60 CGGGAATTACTTCGAGAGGTTGCCTGTGAAGCTTCCTAATAACCGCCATGTGGAGAAGGA 119
Query 557 g-agaagaaggaggtgaaagaggaggaggtggagaaTTTGGGGCTTAGAGAGTTGATCGA 615
| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 120 GAAGAAGAAGGAGGTGAAAGAAGAGGAGGTGGAGAATTGGGGGCTTAGAGAGTTGATCGA 179
Query 616 TGGTGGAGACGCTGCTCGTGGTAGGATTCTTCATAGGAACAACATCAACATCGGTTCCTC 675
|||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TGGTGGTGACGTTGCTCCTGGTAGGATTCTTCATAGGAACAACATTAACATCGGTTCCTC 239
Query 676 AAGG 679
||||
Sbjct 240 AAGG 243
> AT1G55710.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G53342.1);
Has 19 Blast hits to 19 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20825924-20826142
REVERSE LENGTH=219
Length=219
Score = 248 bits (134), Expect = 7e-65
Identities = 167/182 (92%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 504 GGAATTACTTCGAGAGGTTGCCTGTGAAGCTTCCTAAT---CGCCGTGTagagaa-g-g- 557
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||| | |
Sbjct 14 GGAATTACTTCGAGAGGTTGCCTGTGAAGCTTCCTAATAACCGCCATGTGGAGAAGGAGA 73
Query 558 agaagaaggaggtgaaagaggaggaggtggagaaTTTGGGGCTTAGAGAGTTGATCGATG 617
||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||
Sbjct 74 AGAAGAAGGAGGTGAAAGAAGAGGACGTGGAGAATTGGGGGCTTAGAGAGTTGATCGATG 133
Query 618 GTGGAGACGCTGCTCGTGGTAGGATTCTTCATAGGAACAACATCAACATCGGTTCCTCAA 677
|||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 GTGGTGCCGTTGCTCCTGGTAGGATTCTTCATAGGAACAACATCAACATCGGTTCCTCAA 193
Query 678 GG 679
||
Sbjct 194 GG 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49631337236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5