BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485755
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53668.1 | Symbols: CPuORF51 | conserved peptide upstream op... 1031 0.0
AT3G53670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1031 0.0
AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream op... 152 7e-36
AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 152 7e-36
> AT3G53668.1 | Symbols: CPuORF51 | conserved peptide upstream
open reading frame 51 | chr3:19890421-19892404 FORWARD LENGTH=1398
Length=1398
Score = 1031 bits (558), Expect = 0.0
Identities = 653/698 (94%), Gaps = 10/698 (1%)
Strand=Plus/Plus
Query 507 CGAGTTACTTTTGGATATGAGCTCTGCCTGTGGTGGGTTGGATTTCAAAGATGCAGAGAG 566
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 581 CGAGTTACTTTTGGATATGAGCTCTGTCTGTGGTGGGTTGGATTTCAAAGATGCAGAGAG 640
Query 567 CGGCTCTGCTTCCAGTCCCAATAAATGTTCTAATGGCTCATCAAAGCATATCTCTTGTCT 626
| |||||||||||||||||| || |||||||| ||| | | |||||||||||||||| |
Sbjct 641 CAGCTCTGCTTCCAGTCCCATTATATGTTCTACTGG--CGT-AAAGCATATCTCTTGTGT 697
Query 627 CGGATCTGAAGATGCTCAAGAGTCTGATGGTGATGATAGTGGTTATATACACCAATA-TG 685
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 698 TGGATCTGATGATGCTCAAGAGTCTGATGGTGATGATAGTGGTTATATACACCAA-ACTG 756
Query 686 TGATTGAAGATTCCAAAGACAAGGCGATCAGTGAGCCCATCCTTGAGTCTTTACCTCTTG 745
|||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||
Sbjct 757 TGATTGAAGAATCCAAAGACAAGGCGATCAGCGAACCCATCCCTGAGTCTTTACCTCTCA 816
Query 746 AGTCTTTGGATGATGAAAGTGAAGATAAGAACCTTGCAT-CCGCATTGCAAGACATGTTC 804
| ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 817 ATTCTTTGGATGATGAAAGTGAAGATAAGAACCTTGC-TACTGCATTGCAAGACATGTTC 875
Query 805 TCTGAGAGTATGAGTGTGGTTACTCTGATTCCTGCCATTAAAGGTGGTCGAGAGAAGCAT 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 TCTGAGAGTATGAGTGTGGTTACTCTGATTCCTGCCATTAAAGGTGGTCGAGAGAAGCAT 935
Query 865 GGCAAGTCACTCGAGAAGCTGAGAGTGTCATGGGCTGAAGATGTGTATGATCCTCCACCT 924
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 936 GGCAAGTCACTCGAGAAGCTCAGTGTGTCATGGGCTGAAGATGTGTATGATCCTCCTCCC 995
Query 925 TCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAACCGCAGAAATCAAAGAGCAAAGAC 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAACCGCAGAAATCAAAGAGCAAAGAC 1055
Query 985 AACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAAGCAGCCATTCCCGTGGCAGCAAA 1044
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1056 AACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAAGCAGCAATTCCCGCAGCAGCAAA 1115
Query 1045 GACAAGAAGCAGATTTCTTCTCGCAGCAGCAGCAAATACAGTCGTGATAAGTTTGATTGG 1104
|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 1116 GACAAGAAGCAGATTTCTTCACGCAGCAGCA--AA-TACAGTCGTGATAAGTTTGATTGG 1172
Query 1105 GCAACACAAATGTCTGTTCTAGCTGCGTCTTCTTGAATCTGTGTAGCATCACCAAGGCAC 1164
||||||||||||||||||||||||| ||||||||||||||||| | || |||||||| |
Sbjct 1173 ACAACACAAATGTCTGTTCTAGCTGCATCTTCTTGAATCTGTGTGGTATGACCAAGGCTC 1232
Query 1165 TTGCGTCTTCCGTActcttttctctctcactctctctT 1202
||||||||||| | ||||| |||||||| |||||||||
Sbjct 1233 TTGCGTCTTCCTTGCTCTTGTCTCTCTCTCTCTCTCTT 1270
Score = 477 bits (258), Expect = 1e-133
Identities = 321/348 (92%), Gaps = 18/348 (5%)
Strand=Plus/Plus
Query 58 CGGATTCTTGTTACCATGATTCGGCTATAGTGTTTGT-GCCTCTGATTGATTGTCCCAAG 116
||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 105 CGGATTCTTGTTACCATGATTCGGCTATAGTGTTTGTCGCCTC----TGATTGTCTCAAG 160
Query 117 CATCGTTCTTTACTGATTTTTAGAGGTATCTCTGAGATCTGTCTCTGCGATTCGTCGGAT 176
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 161 CATCGTTCTTTACTGATTTTTAGA--TAGCTCTGAGATCTGTCTCTGCGATTCGTCGGAT 218
Query 177 TTG-ATTAGGGttttttttttt---t-G-TTTTGGATTTCTTCTTCTAGGGTATCGAAGA 230
||| ||| |||||||||||| | | | ||||||||||||||||||||| || ||||
Sbjct 219 TTGAATT--CGTTTTTTTTTTTGGGTAGCTCTTGGATTTCTTCTTCTAGGGTTTCCAAGA 276
Query 231 GGATAGAGAAAATGCGGGTGTCCTCTGAGATACTCCTTCTTTCTTTGGTTCCGGCGTTGA 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GGATAGAGAAAATGCGGGTGTCCTCTGAGATACTCCTTCTTTCTTTGGTTCCGGCGTTGA 336
Query 291 CTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCTCTTCAAAAGAGTGATTGGC 350
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CTTTTTATCATTCTGGTTTAAGTTCTAATCGTTTGAAACCTCTTCAAAAGAGTGATTGGC 396
Query 351 GTGGTAATCTTAGTTAAACAA-AGATTTCTCTGTTTTTCAAGTTTCTC 397
||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 397 GTGGTAATCTTAGTTAAACAACA-ATTTCTCTGTTTTTTT-GTTTCTC 442
> AT3G53670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G37480.1);
Has 176 Blast hits to 173 proteins in 30 species: Archae -
0; Bacteria - 0; Metazoa - 8; Fungi - 13; Plants - 154; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:19890421-19892404
FORWARD LENGTH=1398
Length=1398
Score = 1031 bits (558), Expect = 0.0
Identities = 653/698 (94%), Gaps = 10/698 (1%)
Strand=Plus/Plus
Query 507 CGAGTTACTTTTGGATATGAGCTCTGCCTGTGGTGGGTTGGATTTCAAAGATGCAGAGAG 566
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 581 CGAGTTACTTTTGGATATGAGCTCTGTCTGTGGTGGGTTGGATTTCAAAGATGCAGAGAG 640
Query 567 CGGCTCTGCTTCCAGTCCCAATAAATGTTCTAATGGCTCATCAAAGCATATCTCTTGTCT 626
| |||||||||||||||||| || |||||||| ||| | | |||||||||||||||| |
Sbjct 641 CAGCTCTGCTTCCAGTCCCATTATATGTTCTACTGG--CGT-AAAGCATATCTCTTGTGT 697
Query 627 CGGATCTGAAGATGCTCAAGAGTCTGATGGTGATGATAGTGGTTATATACACCAATA-TG 685
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 698 TGGATCTGATGATGCTCAAGAGTCTGATGGTGATGATAGTGGTTATATACACCAA-ACTG 756
Query 686 TGATTGAAGATTCCAAAGACAAGGCGATCAGTGAGCCCATCCTTGAGTCTTTACCTCTTG 745
|||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||
Sbjct 757 TGATTGAAGAATCCAAAGACAAGGCGATCAGCGAACCCATCCCTGAGTCTTTACCTCTCA 816
Query 746 AGTCTTTGGATGATGAAAGTGAAGATAAGAACCTTGCAT-CCGCATTGCAAGACATGTTC 804
| ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 817 ATTCTTTGGATGATGAAAGTGAAGATAAGAACCTTGC-TACTGCATTGCAAGACATGTTC 875
Query 805 TCTGAGAGTATGAGTGTGGTTACTCTGATTCCTGCCATTAAAGGTGGTCGAGAGAAGCAT 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 TCTGAGAGTATGAGTGTGGTTACTCTGATTCCTGCCATTAAAGGTGGTCGAGAGAAGCAT 935
Query 865 GGCAAGTCACTCGAGAAGCTGAGAGTGTCATGGGCTGAAGATGTGTATGATCCTCCACCT 924
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 936 GGCAAGTCACTCGAGAAGCTCAGTGTGTCATGGGCTGAAGATGTGTATGATCCTCCTCCC 995
Query 925 TCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAACCGCAGAAATCAAAGAGCAAAGAC 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAACCGCAGAAATCAAAGAGCAAAGAC 1055
Query 985 AACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAAGCAGCCATTCCCGTGGCAGCAAA 1044
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1056 AACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAAGCAGCAATTCCCGCAGCAGCAAA 1115
Query 1045 GACAAGAAGCAGATTTCTTCTCGCAGCAGCAGCAAATACAGTCGTGATAAGTTTGATTGG 1104
|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 1116 GACAAGAAGCAGATTTCTTCACGCAGCAGCA--AA-TACAGTCGTGATAAGTTTGATTGG 1172
Query 1105 GCAACACAAATGTCTGTTCTAGCTGCGTCTTCTTGAATCTGTGTAGCATCACCAAGGCAC 1164
||||||||||||||||||||||||| ||||||||||||||||| | || |||||||| |
Sbjct 1173 ACAACACAAATGTCTGTTCTAGCTGCATCTTCTTGAATCTGTGTGGTATGACCAAGGCTC 1232
Query 1165 TTGCGTCTTCCGTActcttttctctctcactctctctT 1202
||||||||||| | ||||| |||||||| |||||||||
Sbjct 1233 TTGCGTCTTCCTTGCTCTTGTCTCTCTCTCTCTCTCTT 1270
Score = 477 bits (258), Expect = 1e-133
Identities = 321/348 (92%), Gaps = 18/348 (5%)
Strand=Plus/Plus
Query 58 CGGATTCTTGTTACCATGATTCGGCTATAGTGTTTGT-GCCTCTGATTGATTGTCCCAAG 116
||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 105 CGGATTCTTGTTACCATGATTCGGCTATAGTGTTTGTCGCCTC----TGATTGTCTCAAG 160
Query 117 CATCGTTCTTTACTGATTTTTAGAGGTATCTCTGAGATCTGTCTCTGCGATTCGTCGGAT 176
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 161 CATCGTTCTTTACTGATTTTTAGA--TAGCTCTGAGATCTGTCTCTGCGATTCGTCGGAT 218
Query 177 TTG-ATTAGGGttttttttttt---t-G-TTTTGGATTTCTTCTTCTAGGGTATCGAAGA 230
||| ||| |||||||||||| | | | ||||||||||||||||||||| || ||||
Sbjct 219 TTGAATT--CGTTTTTTTTTTTGGGTAGCTCTTGGATTTCTTCTTCTAGGGTTTCCAAGA 276
Query 231 GGATAGAGAAAATGCGGGTGTCCTCTGAGATACTCCTTCTTTCTTTGGTTCCGGCGTTGA 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GGATAGAGAAAATGCGGGTGTCCTCTGAGATACTCCTTCTTTCTTTGGTTCCGGCGTTGA 336
Query 291 CTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCTCTTCAAAAGAGTGATTGGC 350
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CTTTTTATCATTCTGGTTTAAGTTCTAATCGTTTGAAACCTCTTCAAAAGAGTGATTGGC 396
Query 351 GTGGTAATCTTAGTTAAACAA-AGATTTCTCTGTTTTTCAAGTTTCTC 397
||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 397 GTGGTAATCTTAGTTAAACAACA-ATTTCTCTGTTTTTTT-GTTTCTC 442
> AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream
open reading frame 52 | chr2:15737842-15739848 FORWARD LENGTH=1455
Length=1455
Score = 152 bits (82), Expect = 7e-36
Identities = 134/158 (85%), Gaps = 8/158 (5%)
Strand=Plus/Plus
Query 218 AGGGTATCGAAGAGGAT-AGAGAA-AATG-C--GGGTGTCCTCTGAGATAC-TCCT-T-C 269
||||| |||||||| || ||| || |||| | |||| ||||| || | | |||| | |
Sbjct 272 AGGGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTCTTCCTCTCC 331
Query 270 TTTCTTTGGTTCCGGCGTTGACTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 329
| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 332 TGTCTTTGATTCCTTCGTTGACTCCTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 391
Query 330 CTCTTCAAAAGAGTGATTGGCGTGGTAATCTTAGTTAA 367
||||| ||||| ||||||||||||||||||||||||||
Sbjct 392 CTCTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAA 429
> AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G53670.2);
Has 186 Blast hits to 186 proteins in 35 species: Archae -
0; Bacteria - 2; Metazoa - 14; Fungi - 7; Plants - 154; Viruses
- 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:15737842-15739848
FORWARD LENGTH=1455
Length=1455
Score = 152 bits (82), Expect = 7e-36
Identities = 134/158 (85%), Gaps = 8/158 (5%)
Strand=Plus/Plus
Query 218 AGGGTATCGAAGAGGAT-AGAGAA-AATG-C--GGGTGTCCTCTGAGATAC-TCCT-T-C 269
||||| |||||||| || ||| || |||| | |||| ||||| || | | |||| | |
Sbjct 272 AGGGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTCTTCCTCTCC 331
Query 270 TTTCTTTGGTTCCGGCGTTGACTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 329
| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 332 TGTCTTTGATTCCTTCGTTGACTCCTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 391
Query 330 CTCTTCAAAAGAGTGATTGGCGTGGTAATCTTAGTTAA 367
||||| ||||| ||||||||||||||||||||||||||
Sbjct 392 CTCTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAA 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5