BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485755 Length=1202 Score E Sequences producing significant alignments: (Bits) Value AT3G53668.1 | Symbols: CPuORF51 | conserved peptide upstream op... 1031 0.0 AT3G53670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1031 0.0 AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream op... 152 7e-36 AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 152 7e-36 > AT3G53668.1 | Symbols: CPuORF51 | conserved peptide upstream open reading frame 51 | chr3:19890421-19892404 FORWARD LENGTH=1398 Length=1398 Score = 1031 bits (558), Expect = 0.0 Identities = 653/698 (94%), Gaps = 10/698 (1%) Strand=Plus/Plus Query 507 CGAGTTACTTTTGGATATGAGCTCTGCCTGTGGTGGGTTGGATTTCAAAGATGCAGAGAG 566 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 581 CGAGTTACTTTTGGATATGAGCTCTGTCTGTGGTGGGTTGGATTTCAAAGATGCAGAGAG 640 Query 567 CGGCTCTGCTTCCAGTCCCAATAAATGTTCTAATGGCTCATCAAAGCATATCTCTTGTCT 626 | |||||||||||||||||| || |||||||| ||| | | |||||||||||||||| | Sbjct 641 CAGCTCTGCTTCCAGTCCCATTATATGTTCTACTGG--CGT-AAAGCATATCTCTTGTGT 697 Query 627 CGGATCTGAAGATGCTCAAGAGTCTGATGGTGATGATAGTGGTTATATACACCAATA-TG 685 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 698 TGGATCTGATGATGCTCAAGAGTCTGATGGTGATGATAGTGGTTATATACACCAA-ACTG 756 Query 686 TGATTGAAGATTCCAAAGACAAGGCGATCAGTGAGCCCATCCTTGAGTCTTTACCTCTTG 745 |||||||||| |||||||||||||||||||| || ||||||| ||||||||||||||| Sbjct 757 TGATTGAAGAATCCAAAGACAAGGCGATCAGCGAACCCATCCCTGAGTCTTTACCTCTCA 816 Query 746 AGTCTTTGGATGATGAAAGTGAAGATAAGAACCTTGCAT-CCGCATTGCAAGACATGTTC 804 | ||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| Sbjct 817 ATTCTTTGGATGATGAAAGTGAAGATAAGAACCTTGC-TACTGCATTGCAAGACATGTTC 875 Query 805 TCTGAGAGTATGAGTGTGGTTACTCTGATTCCTGCCATTAAAGGTGGTCGAGAGAAGCAT 864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 876 TCTGAGAGTATGAGTGTGGTTACTCTGATTCCTGCCATTAAAGGTGGTCGAGAGAAGCAT 935 Query 865 GGCAAGTCACTCGAGAAGCTGAGAGTGTCATGGGCTGAAGATGTGTATGATCCTCCACCT 924 |||||||||||||||||||| || |||||||||||||||||||||||||||||||| || Sbjct 936 GGCAAGTCACTCGAGAAGCTCAGTGTGTCATGGGCTGAAGATGTGTATGATCCTCCTCCC 995 Query 925 TCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAACCGCAGAAATCAAAGAGCAAAGAC 984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 996 TCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAACCGCAGAAATCAAAGAGCAAAGAC 1055 Query 985 AACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAAGCAGCCATTCCCGTGGCAGCAAA 1044 |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1056 AACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAAGCAGCAATTCCCGCAGCAGCAAA 1115 Query 1045 GACAAGAAGCAGATTTCTTCTCGCAGCAGCAGCAAATACAGTCGTGATAAGTTTGATTGG 1104 |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| Sbjct 1116 GACAAGAAGCAGATTTCTTCACGCAGCAGCA--AA-TACAGTCGTGATAAGTTTGATTGG 1172 Query 1105 GCAACACAAATGTCTGTTCTAGCTGCGTCTTCTTGAATCTGTGTAGCATCACCAAGGCAC 1164 ||||||||||||||||||||||||| ||||||||||||||||| | || |||||||| | Sbjct 1173 ACAACACAAATGTCTGTTCTAGCTGCATCTTCTTGAATCTGTGTGGTATGACCAAGGCTC 1232 Query 1165 TTGCGTCTTCCGTActcttttctctctcactctctctT 1202 ||||||||||| | ||||| |||||||| ||||||||| Sbjct 1233 TTGCGTCTTCCTTGCTCTTGTCTCTCTCTCTCTCTCTT 1270 Score = 477 bits (258), Expect = 1e-133 Identities = 321/348 (92%), Gaps = 18/348 (5%) Strand=Plus/Plus Query 58 CGGATTCTTGTTACCATGATTCGGCTATAGTGTTTGT-GCCTCTGATTGATTGTCCCAAG 116 ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 105 CGGATTCTTGTTACCATGATTCGGCTATAGTGTTTGTCGCCTC----TGATTGTCTCAAG 160 Query 117 CATCGTTCTTTACTGATTTTTAGAGGTATCTCTGAGATCTGTCTCTGCGATTCGTCGGAT 176 |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 161 CATCGTTCTTTACTGATTTTTAGA--TAGCTCTGAGATCTGTCTCTGCGATTCGTCGGAT 218 Query 177 TTG-ATTAGGGttttttttttt---t-G-TTTTGGATTTCTTCTTCTAGGGTATCGAAGA 230 ||| ||| |||||||||||| | | | ||||||||||||||||||||| || |||| Sbjct 219 TTGAATT--CGTTTTTTTTTTTGGGTAGCTCTTGGATTTCTTCTTCTAGGGTTTCCAAGA 276 Query 231 GGATAGAGAAAATGCGGGTGTCCTCTGAGATACTCCTTCTTTCTTTGGTTCCGGCGTTGA 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 GGATAGAGAAAATGCGGGTGTCCTCTGAGATACTCCTTCTTTCTTTGGTTCCGGCGTTGA 336 Query 291 CTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCTCTTCAAAAGAGTGATTGGC 350 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 337 CTTTTTATCATTCTGGTTTAAGTTCTAATCGTTTGAAACCTCTTCAAAAGAGTGATTGGC 396 Query 351 GTGGTAATCTTAGTTAAACAA-AGATTTCTCTGTTTTTCAAGTTTCTC 397 ||||||||||||||||||||| | |||||||||||||| ||||||| Sbjct 397 GTGGTAATCTTAGTTAAACAACA-ATTTCTCTGTTTTTTT-GTTTCTC 442 > AT3G53670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37480.1); Has 176 Blast hits to 173 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 13; Plants - 154; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:19890421-19892404 FORWARD LENGTH=1398 Length=1398 Score = 1031 bits (558), Expect = 0.0 Identities = 653/698 (94%), Gaps = 10/698 (1%) Strand=Plus/Plus Query 507 CGAGTTACTTTTGGATATGAGCTCTGCCTGTGGTGGGTTGGATTTCAAAGATGCAGAGAG 566 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 581 CGAGTTACTTTTGGATATGAGCTCTGTCTGTGGTGGGTTGGATTTCAAAGATGCAGAGAG 640 Query 567 CGGCTCTGCTTCCAGTCCCAATAAATGTTCTAATGGCTCATCAAAGCATATCTCTTGTCT 626 | |||||||||||||||||| || |||||||| ||| | | |||||||||||||||| | Sbjct 641 CAGCTCTGCTTCCAGTCCCATTATATGTTCTACTGG--CGT-AAAGCATATCTCTTGTGT 697 Query 627 CGGATCTGAAGATGCTCAAGAGTCTGATGGTGATGATAGTGGTTATATACACCAATA-TG 685 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 698 TGGATCTGATGATGCTCAAGAGTCTGATGGTGATGATAGTGGTTATATACACCAA-ACTG 756 Query 686 TGATTGAAGATTCCAAAGACAAGGCGATCAGTGAGCCCATCCTTGAGTCTTTACCTCTTG 745 |||||||||| |||||||||||||||||||| || ||||||| ||||||||||||||| Sbjct 757 TGATTGAAGAATCCAAAGACAAGGCGATCAGCGAACCCATCCCTGAGTCTTTACCTCTCA 816 Query 746 AGTCTTTGGATGATGAAAGTGAAGATAAGAACCTTGCAT-CCGCATTGCAAGACATGTTC 804 | ||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| Sbjct 817 ATTCTTTGGATGATGAAAGTGAAGATAAGAACCTTGC-TACTGCATTGCAAGACATGTTC 875 Query 805 TCTGAGAGTATGAGTGTGGTTACTCTGATTCCTGCCATTAAAGGTGGTCGAGAGAAGCAT 864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 876 TCTGAGAGTATGAGTGTGGTTACTCTGATTCCTGCCATTAAAGGTGGTCGAGAGAAGCAT 935 Query 865 GGCAAGTCACTCGAGAAGCTGAGAGTGTCATGGGCTGAAGATGTGTATGATCCTCCACCT 924 |||||||||||||||||||| || |||||||||||||||||||||||||||||||| || Sbjct 936 GGCAAGTCACTCGAGAAGCTCAGTGTGTCATGGGCTGAAGATGTGTATGATCCTCCTCCC 995 Query 925 TCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAACCGCAGAAATCAAAGAGCAAAGAC 984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 996 TCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAACCGCAGAAATCAAAGAGCAAAGAC 1055 Query 985 AACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAAGCAGCCATTCCCGTGGCAGCAAA 1044 |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1056 AACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAAGCAGCAATTCCCGCAGCAGCAAA 1115 Query 1045 GACAAGAAGCAGATTTCTTCTCGCAGCAGCAGCAAATACAGTCGTGATAAGTTTGATTGG 1104 |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| Sbjct 1116 GACAAGAAGCAGATTTCTTCACGCAGCAGCA--AA-TACAGTCGTGATAAGTTTGATTGG 1172 Query 1105 GCAACACAAATGTCTGTTCTAGCTGCGTCTTCTTGAATCTGTGTAGCATCACCAAGGCAC 1164 ||||||||||||||||||||||||| ||||||||||||||||| | || |||||||| | Sbjct 1173 ACAACACAAATGTCTGTTCTAGCTGCATCTTCTTGAATCTGTGTGGTATGACCAAGGCTC 1232 Query 1165 TTGCGTCTTCCGTActcttttctctctcactctctctT 1202 ||||||||||| | ||||| |||||||| ||||||||| Sbjct 1233 TTGCGTCTTCCTTGCTCTTGTCTCTCTCTCTCTCTCTT 1270 Score = 477 bits (258), Expect = 1e-133 Identities = 321/348 (92%), Gaps = 18/348 (5%) Strand=Plus/Plus Query 58 CGGATTCTTGTTACCATGATTCGGCTATAGTGTTTGT-GCCTCTGATTGATTGTCCCAAG 116 ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 105 CGGATTCTTGTTACCATGATTCGGCTATAGTGTTTGTCGCCTC----TGATTGTCTCAAG 160 Query 117 CATCGTTCTTTACTGATTTTTAGAGGTATCTCTGAGATCTGTCTCTGCGATTCGTCGGAT 176 |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 161 CATCGTTCTTTACTGATTTTTAGA--TAGCTCTGAGATCTGTCTCTGCGATTCGTCGGAT 218 Query 177 TTG-ATTAGGGttttttttttt---t-G-TTTTGGATTTCTTCTTCTAGGGTATCGAAGA 230 ||| ||| |||||||||||| | | | ||||||||||||||||||||| || |||| Sbjct 219 TTGAATT--CGTTTTTTTTTTTGGGTAGCTCTTGGATTTCTTCTTCTAGGGTTTCCAAGA 276 Query 231 GGATAGAGAAAATGCGGGTGTCCTCTGAGATACTCCTTCTTTCTTTGGTTCCGGCGTTGA 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 GGATAGAGAAAATGCGGGTGTCCTCTGAGATACTCCTTCTTTCTTTGGTTCCGGCGTTGA 336 Query 291 CTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCTCTTCAAAAGAGTGATTGGC 350 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 337 CTTTTTATCATTCTGGTTTAAGTTCTAATCGTTTGAAACCTCTTCAAAAGAGTGATTGGC 396 Query 351 GTGGTAATCTTAGTTAAACAA-AGATTTCTCTGTTTTTCAAGTTTCTC 397 ||||||||||||||||||||| | |||||||||||||| ||||||| Sbjct 397 GTGGTAATCTTAGTTAAACAACA-ATTTCTCTGTTTTTTT-GTTTCTC 442 > AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream open reading frame 52 | chr2:15737842-15739848 FORWARD LENGTH=1455 Length=1455 Score = 152 bits (82), Expect = 7e-36 Identities = 134/158 (85%), Gaps = 8/158 (5%) Strand=Plus/Plus Query 218 AGGGTATCGAAGAGGAT-AGAGAA-AATG-C--GGGTGTCCTCTGAGATAC-TCCT-T-C 269 ||||| |||||||| || ||| || |||| | |||| ||||| || | | |||| | | Sbjct 272 AGGGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTCTTCCTCTCC 331 Query 270 TTTCTTTGGTTCCGGCGTTGACTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 329 | |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 332 TGTCTTTGATTCCTTCGTTGACTCCTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 391 Query 330 CTCTTCAAAAGAGTGATTGGCGTGGTAATCTTAGTTAA 367 ||||| ||||| |||||||||||||||||||||||||| Sbjct 392 CTCTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAA 429 > AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53670.2); Has 186 Blast hits to 186 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 7; Plants - 154; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:15737842-15739848 FORWARD LENGTH=1455 Length=1455 Score = 152 bits (82), Expect = 7e-36 Identities = 134/158 (85%), Gaps = 8/158 (5%) Strand=Plus/Plus Query 218 AGGGTATCGAAGAGGAT-AGAGAA-AATG-C--GGGTGTCCTCTGAGATAC-TCCT-T-C 269 ||||| |||||||| || ||| || |||| | |||| ||||| || | | |||| | | Sbjct 272 AGGGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTCTTCCTCTCC 331 Query 270 TTTCTTTGGTTCCGGCGTTGACTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 329 | |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 332 TGTCTTTGATTCCTTCGTTGACTCCTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 391 Query 330 CTCTTCAAAAGAGTGATTGGCGTGGTAATCTTAGTTAA 367 ||||| ||||| |||||||||||||||||||||||||| Sbjct 392 CTCTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAA 429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59035840920 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5