BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485760
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53710.1 | Symbols: AGD6 | ARF-GAP domain 6 | chr3:19903313-... 2780 0.0
> AT3G53710.1 | Symbols: AGD6 | ARF-GAP domain 6 | chr3:19903313-19905489
REVERSE LENGTH=1791
Length=1791
Score = 2780 bits (1505), Expect = 0.0
Identities = 1696/1787 (95%), Gaps = 18/1787 (1%)
Strand=Plus/Plus
Query 1 CACAAGTCTGCGAGATTTGGATCAGATCTGCTTCAGGTTGGATTGATTGGT-GATCAGAG 59
|||||||||||||||||||||| ||||||| ||||||||||||||| | | | || |||
Sbjct 1 CACAAGTCTGCGAGATTTGGATTAGATCTGATTCAGGTTGGATTGA-TCATCGTTCGGAG 59
Query 60 CTCCGGGAAACATGGCGGCGGCGAGACAATTACGCACTCTCCAATCTCAACCTGAAAACA 119
|||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct 60 CTCCGGGAAACATGGCGGCGACGAGACAATTACGAACTCTCCAATCTCAGCCTGAAAACA 119
Query 120 AGGTATGTGTCGACTGCGCTCAGAAGAATCCTCAATGGGCGTCGGTTTCTTACGGAATCT 179
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 AGGTATGTGTCGATTGCGCTCAGAAGAATCCTCAATGGGCGTCGGTTTCGTACGGAATCT 179
Query 180 TCATGTGTTTGGAATGCTCCGGGAAACACCGAGGCTTAGGCGTTCACATCTCCTTCGTCA 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TCATGTGTTTGGAATGCTCCGGGAAACACCGAGGCTTAGGCGTTCACATATCCTTCGTCA 239
Query 240 GATCCGTAACCATGGATTCATGGTCTGAGATCCAGATCAAGAAAATGGAAGCTGGAGGCA 299
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |
Sbjct 240 GATCCGTAACCATGGATTCATGGTCTGCGATCCAGATTAAGAAAATGGAAGCTGGTGGTA 299
Query 300 ACGAACGACTCAACAAATTCTTCGCGCAATACGGAATCTCTAAAGAGACTGATATCATTT 359
||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||| || |
Sbjct 300 ACGAACGGCTCAACAAATTCTTCGCGCAATACGGAATCGCTAAGGAGACAGATATTATCT 359
Query 360 CAAAGTACAATTCGAATGCTGCTTCTGTGTATCGTGACCGGATCCAAGCTTTAGCTGAAG 419
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCAAGTACAATTCGAACGCTGCTTCTGTGTATCGTGACCGGATCCAAGCTTTAGCTGAAG 419
Query 420 GTAGGCCATGGAATGATCCGCCAGTTGTTAAGGAAGCGAATAAGAAGCCTCCGTTGGCTC 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTAGACCATGGAATGATCCGCCAGTTGTTAAGGAAGCGAATAAGAAGCCTCCGTTGGCTC 479
Query 480 AGGGCGGTTATGGAaacaacaacaacaacaacaaTGGAGGATGGGATAGTTGGGATAACG 539
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 480 AGGGCGGTTACGGAAACAACAATAACAATAACAATGGAGGATGGGATAGTTGGGATAACG 539
Query 540 ATGATTCTTACAAATCTTCAACTGATATGAGACGGAATCAATCAGCGAATGATTTTAGGG 599
|||||||||||||| | ||||||||||| ||||||| |||||||||||||| ||||
Sbjct 540 ATGATTCTTACAAA---T---CTGATATGAGAAGGAATCAGTCAGCGAATGATTTCAGGG 593
Query 600 CATCGGGAACTAGAGGAGGTGCACATGTGAAGTCAAAGTCGTCGTCGGATATCTACACGC 659
||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 594 CATCGGGAAATAGAGAAGGTGCACATGTGAAGTCAAAGTCGTCGGAGGATATCTACACGC 653
Query 660 GATCCG-AGCTGGAGGCTTCTGCTGCGGGGAAAGAGAGCTTCTTCGCGAGGAGAATGGCG 718
||| || |||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 654 GAT-CGCAGCTTGAGGCTTCTGCCGCTGGGAAAGAGAGTTTCTTCGCGAGGAGAATGGCG 712
Query 719 GAGAATGAGTCTAAGCCTGAAGGTCTTCCTCCTTCGCAAGGCGGTAAGTATGTAGGATTC 778
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 713 GAGAATGAGTCTAAGCCTGAAGGTCTTCCTCCTTCGCAAGGTGGCAAGTATGTAGGATTC 772
Query 779 GGATCAAGCTCCGCTCCACCACCGAGAAATAATCAACAGGATGATGTTTTCTCCGTTGTT 838
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GGATCAAGCTCGGCTCCACCACCGAGAAATAATCAACAGGATGATGTTTTCTCCGTTGTT 832
Query 839 TCTCAGGGTTTTGGAAGACTGTCTCTGGTTGCTGCATCTGCAGCTCAGTCAGCTGCAAGT 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 833 TCTCAGGGTTTTGGAAGACTGTCTCTGGTTGCTGCATCTGCAGCTCAGTCAGCTGCTAGT 892
Query 899 GTTGTTCAAACAGGAACCAAGGAGTTCACATCCAAGGTGAAGGAAGGTGGGTATGATCAC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GTTGTTCAAACAGGAACCAAGGAGTTCACATCCAAGGTGAAGGAAGGTGGGTATGATCAC 952
Query 959 AAGGTGAGTGAAACTGTAAATGTAGTTGCTAATAAGACAACAGAGATAGGACATAGGACA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AAGGTGAGTGAAACTGTAAATGTAGTTGCTAATAAGACAACAGAGATAGGACATAGGACA 1012
Query 1019 TGGGGGATCATGAAAGGAGTAATGGCAATGGCGACACAGAAGGTAGAAGAGTTCACTAAA 1078
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1013 TGGGGAATCATGAAAGGAGTAATGGCAATGGCGACACAGAAGGTAGAAGAGTTTACTAAA 1072
Query 1079 GAAGGAACAACAAGCTGGAATCAGCAGAGTGAAAGTGAGGGCAATGGTTACTACCAGAAC 1138
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1073 GAAGGATCAACAAGCTGGAATCAGCAGAGTGAAAATGAGGGCAATGGTTACTACCAGAAC 1132
Query 1139 TTTGGAAACGGGAACAAAGCAGCGAATTCATCTGTTGGAGGAGGAAGGTCACAATCATCA 1198
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1133 TTTGGAAATGGGAACAAAGCAGCGAATTCATCTGTTGGAGGAGGAAGGCCACAATCATCA 1192
Query 1199 ---ACAAGTGGTCATTACAACAATTCGCAGAATTCAAATTCTTGGGATAGCTGGGGAGAG 1255
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1193 TCGACAAGTGGTCATTACAACAACTCGCAGAATTCAAATTCTTGGGATAGTTGGGGAGAG 1252
Query 1256 AATGAGAATAAGAAGACAGAAGCAGCAGCTCCAAAGGGGTCATCTGCTTCTAATGATGAT 1315
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1253 AATGAGAATAAGAAGACAGAAGCAGTAGCTCCAAAGGGGTCATCTGCTTCTAATGATGAT 1312
Query 1316 GATGGCTGGACTGGTTGGGATGATCATGATGCCAAAGATGATGGGTTCGATGGCCATTAC 1375
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1313 GATGGTTGGACTGGTTGGGATGATCATGATGCCAAAGATGATGGGTTCGATGGTCATTAC 1372
Query 1376 CAAAGTGCAGGCGATAAGAAATCTGTTGGTCACAACGAGAAATCAGACACCGCTTGGACC 1435
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1373 CAAAGTGCAGGCGATAAGAAATCTGCTGGTCACAACGGGAAATCAGACACCGCTTGGACT 1432
Query 1436 GGTGGAGGTTTTCTCTAAGGGTGTTTCAGAATCCCCGTGAGAAGTGTATAATTAATTAAG 1495
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1433 GGTGGAGGTTTTCTCTAAGGGTGATTCAGAATGCCGGTGAGAAGTGTATAATTAATTAAG 1492
Query 1496 GCCGGGACCGTCGTGGTCTGAATAGAAGATGAGATTGGTCTTCATCTTAAAACCATGTTC 1555
|| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1493 GCTGGGACCATCGTGGTCTGAATAGAAGATAAGAATGGTCTTCATCTTAAAACCATGTTC 1552
Query 1556 ATCCATACCCACAGGTCTGCGTTTTTCTTCATAAGTTGGCAGTTTCTTGATAATTTTTTC 1615
|||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 1553 ATCCATACCCACAGGTCTGCGTTTTTCTTCATAAGTTGGCGGTTTCTTGATA-TCTTTTC 1611
Query 1616 TTCATGTGTTAAGGAGTAACATATTTGTACAAGATCCATAGCCGATTGTTTGCTAAAGAT 1675
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TTCATGTGTTAAGGAGTAACGTATTTGTACAAGATCCATAGCCGATTGTTTGCTAAAGAT 1671
Query 1676 TTTCGGTTTTAGTCTTTCACAGTTTGAATTTATCTTCAACTGTAATCACAACTGAACATT 1735
||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 1672 TTTCGGTTTTAGTCTTTCACAATTTAAATTTATCTTCAACTGTAACCACAACTGAACATT 1731
Query 1736 CTTTTTCTCAAAATTGGCTTA--C--TTGTTGGTAGCGTGATAATGT 1778
|||||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 1732 CTTTTTCTCAAAATTGCCTTGTTCCGTTGTTCGTAGCGTGATAATGT 1778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87951354840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5