BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485763
Length=401
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53730.1 | Symbols: | Histone superfamily protein | chr3:19... 544 3e-154
AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24... 289 2e-77
AT1G07820.1 | Symbols: | Histone superfamily protein | chr1:24... 233 8e-61
AT1G07660.1 | Symbols: | Histone superfamily protein | chr1:23... 228 4e-59
> AT3G53730.1 | Symbols: | Histone superfamily protein | chr3:19912494-19913033
REVERSE LENGTH=540
Length=540
Score = 544 bits (294), Expect = 3e-154
Identities = 330/347 (95%), Gaps = 4/347 (1%)
Strand=Plus/Plus
Query 1 AAAATGTCAGGCCGAGGAAAAGGAGGAAAAGGATTGGGAAAGGGAGGAGCCAAGAGACAT 60
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 61 AAAATGTCAGGCCGAGGAAAGGGAGGAAAAGGATTAGGAAAGGGAGGAGCCAAGAGACAT 120
Query 61 CGGAAAGTTCTCCGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGAT-TGGC 119
|||||||| ||| |||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 121 CGGAAAGTACTCAGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCG-TCTCGC 179
Query 120 TAGAAGAGGAGGCGTGAAACGTATCAGTGGTTTGATCTATGAAGAGACTCGGGGCGTTCT 179
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 GAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTATGAAGAGACTCGCGGCGTTCT 239
Query 180 CAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCGCCG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCGCCG 299
Query 240 GAAAACAGTTACGGCGATGGACGTCGTTTACGCTCTTAAGAGACAAGGACGGACTTTGTA 299
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 GAAAACTGTTACGGCGATGGACGTCGTTTACGCTCTCAAGAGACAAGGACGAACTTTGTA 359
Query 300 TGGATTCGGCGGCTAAATCGTTATGGTTT-CAATTTCGGATTTTGTA 345
|||||||||||||||||||||| || || |||||||||||||||||
Sbjct 360 TGGATTCGGCGGCTAAATCGTTC-GGATTGCAATTTCGGATTTTGTA 405
> AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24051552-24052143
FORWARD LENGTH=592
Length=592
Score = 289 bits (156), Expect = 2e-77
Identities = 264/317 (83%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 1 AAAATGTCAGGCCGAGGAAAAGGAGGAAAAGGATTGGGAAAGGGAGGAGCCAAGAGACAT 60
|||||||| || || ||||| ||||||||||| ||||| ||||||||||||||| | ||
Sbjct 95 AAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAAGGGAGGAGCCAAGCGTCA- 153
Query 61 C-GGAAAGTTCTCCGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGATTGGC 119
| |||| ||||| |||||||||||||||| || ||||| ||||||||||| |||||||
Sbjct 154 CAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAGATTGGC 213
Query 120 TAGAAGAGGAGGCGTGAAACGTATCAGTGGTTTGATCTATGAAGAGACTCGGGGCGTTCT 179
| | ||||| || || || |||||||||||| | ||||| || |||||||| ||||| ||
Sbjct 214 TCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGAGGAGACTCGTGGCGTCCT 273
Query 180 CAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCGCCG 239
|||||||||||||||||||||||||||||| || || |||||||| ||||||||| | |
Sbjct 274 CAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTACACCGAGCACGCTAGGAG 333
Query 240 GAAAACAGTTACGGCGATGGACGTCGTTTACGCTCTTAAGAGACAAGGACGGACT-TTGT 298
||| || || || || ||||| || || |||||||| ||||| |||||| ||||| || |
Sbjct 334 GAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACTCTT-T 392
Query 299 ATGGATTCGGCGGCTAA 315
| |||||||| || |||
Sbjct 393 ACGGATTCGGTGGTTAA 409
> AT1G07820.1 | Symbols: | Histone superfamily protein | chr1:2421218-2421943
REVERSE LENGTH=726
Length=726
Score = 233 bits (126), Expect = 8e-61
Identities = 254/316 (80%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 4 ATGTCAGGCCGAGGAAAAGGAGGAAAAGGATTGGGAAAGGGAGGAGCCAAGAGACATC-G 62
||||| || ||||||| ||||||||||||||||||||||||||||| ||||| || | |
Sbjct 198 ATGTCGGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGAAGAGGCA-CAG 256
Query 63 GAAAGTTCTCCGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGA-TTGGCTA 121
||| ||||| | || ||||| ||||| || ||||| ||||| |||||||| ||| ||
Sbjct 257 GAAGGTTCTGAGGGATAACATTCAAGGAATCACCAAGCCTGCCATTCGTCGTCTTG-CTC 315
Query 122 GAAGAGGAGGCGTGAAACGTATCAGTGGTTTGATCTATGAAGAGACTCGG-GGCGTTCTC 180
| ||||| || || || |||||||||||| | ||||| |||||||| | | || || |||
Sbjct 316 GTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGAC-CAGAGGTGTCCTC 374
Query 181 AAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCGCCGG 240
|||||||| |||||||| || || |||||||||||||||||||| ||||||||| | ||
Sbjct 375 AAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACTTACACTGAGCACGCTAGAAGG 434
Query 241 AAAACAGTTACGGCGATGGACGTCGTTTACGCTCTT-AAGAGACAAGGACGGACTTTGTA 299
|| || || || || ||||| || || |||||| || ||||| ||||| || ||| | ||
Sbjct 435 AAGACGGTGACCGCCATGGATGTTGTCTACGCT-TTGAAGAGGCAAGGTCGTACTCTCTA 493
Query 300 TGGATTCGGCGGCTAA 315
|| ||||| || |||
Sbjct 494 CGGTTTCGGAGGTTAA 509
> AT1G07660.1 | Symbols: | Histone superfamily protein | chr1:2368837-2369734
FORWARD LENGTH=717
Length=717
Score = 228 bits (123), Expect = 4e-59
Identities = 254/317 (80%), Gaps = 10/317 (3%)
Strand=Plus/Plus
Query 4 ATGTCAGGCCGAGGAAAAGGAGGAAAAGGATTGGGAAAGGGAGGAGCCAAGAGACATC-G 62
|||||||| ||||||| ||||||||||||||||||||||||||||| ||||| || | |
Sbjct 195 ATGTCAGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGAAGAGGCA-CAG 253
Query 63 GAAAGTTCTCCGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGA-TTGGCTA 121
||| ||||| | || ||||| ||||| || ||||| ||||| |||||||| ||| ||
Sbjct 254 GAAGGTTCTGAGGGATAACATTCAAGGAATCACCAAGCCTGCTATTCGTCGTCTTG-CTC 312
Query 122 GAAGAGGAGGCGTGAAACGTATCAGTGGTTTGATCTATGAAGAGACTCGG-GGCGTTCTC 180
| ||||| || || || |||||||||||| | ||||| |||||||| | | || || |||
Sbjct 313 GTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGAC-CAGAGGTGTCCTC 371
Query 181 AAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTC-GCCG 239
|||||||| |||||||| || || |||||||||||||| ||||| |||||||| | | |
Sbjct 372 AAGATCTTCCTCGAGAATGTTATCCGTGACGCCGTTACCTACACTGAGCACGC-CAGGAG 430
Query 240 GAAAACAGTTACGGCGATGGACGTCGTTTACGCTCTT-AAGAGACAAGGACGGACTTTGT 298
||| || || || || ||||| || || |||||| || ||||| ||||| || ||| | |
Sbjct 431 GAAGACGGTGACCGCCATGGATGTTGTCTACGCT-TTGAAGAGGCAAGGTCGTACTCTCT 489
Query 299 ATGGATTCGGCGGCTAA 315
| || ||||| || |||
Sbjct 490 ACGGTTTCGGAGGTTAA 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18950941373
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5