BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485766
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53740.2 | Symbols: | Ribosomal protein L36e family protein... 874 0.0
AT2G37600.1 | Symbols: | Ribosomal protein L36e family protein... 398 4e-110
AT5G02450.1 | Symbols: | Ribosomal protein L36e family protein... 285 3e-76
> AT3G53740.2 | Symbols: | Ribosomal protein L36e family protein
| chr3:19913707-19915016 REVERSE LENGTH=627
Length=627
Score = 874 bits (473), Expect = 0.0
Identities = 573/621 (92%), Gaps = 8/621 (1%)
Strand=Plus/Plus
Query 1 ACAAAAATGCAATTTTCAGTCGTCGT-CTATCTTCCGTCTGAACCACCGGAGGAGCTCGA 59
||||||||| |||||||||||| ||| || |||| ||||||||||||||||||||||||
Sbjct 1 ACAAAAATGTAATTTTCAGTCGGCGTCCT-TCTTTTGTCTGAACCACCGGAGGAGCTCGA 59
Query 60 TCCATTGATTAGAAGATGCCAACTCCGCAAGTGAAGACCGGTTTGTTCGTTGGGTTGAAC 119
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TCCATTGATTAGAAGATGACAACTCCACAAGTGAAGACCGGTTTGTTCGTTGGGTTGAAC 119
Query 120 AAAGGACATGTTGTCACCAGACGTGAATTAGCTCCTCGACCTCGTTCTCGCAAAGGAAAA 179
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 AAGGGACATGTTGTTACCAGACGTGAATTAGCTCCTCGTCCTCGTTCTCGCAAAGGAAAA 179
Query 180 ACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTGGT-ATGGCTCC 238
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 180 ACGAGCAAGAGGACAATCTTTATCAGAAACTTGATAAAGGAAGTTGCTGGTCA-AGCTCC 238
Query 239 CTATGAGAAGAGAATCACTGAGCTTTTGAAGGTTGGTAAAGACAAACGTGCTCTTAAGGT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTATGAGAAGAGAATCACTGAGCTTTTGAAGGTTGGTAAAGACAAACGTGCTCTTAAGGT 298
Query 299 TGCTAAGAGGAAGTTGGGAACCCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCCAG 358
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 299 TGCTAAGAGGAAGTTGGGAACCCACAAGAGAGCCAAGCGAAAGAGAGAGGAGATGTCCAG 358
Query 359 TACTCTCCGCAAAATGAGGTCTGGTGGTGGTGGTGCAACTGAGAAGAAGAAGTGAGCATC 418
| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 359 TGTTCTCCGCAAGATGAGGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTC 418
Query 419 ATCTTAAGTTTGGGA-TAGCTCTTAAAGAGTTTTGGTTTCTTGTTGCAAAATC---ATGA 474
|||||||||||| || | |||| ||||||||| |||||||||||||||||||| || |
Sbjct 419 ATCTTAAGTTTGTGAATCGCTCGTAAAGAGTTATGGTTTCTTGTTGCAAAATCGTTATTA 478
Query 475 CGATAACTAAGCTTCTCGTATTATGTTTTGTTAAAATATCGAATTTGAAGACAGTTTTGT 534
||| |||||||||||| |||||||||||||| ||||||| | || |||| ||||||||
Sbjct 479 TGATTCCTAAGCTTCTCGAATTATGTTTTGTTAGAATATCGGACTTAAAGAGAGTTTTGT 538
Query 535 CACAGACCGGTGACTCTGCTTTTAAACTATTTGCTTCTTTTAATCAATTATCTTTCTTTT 594
| ||||| |||||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 539 CTGAGACCAGTGACTCTGCCTTTAAACTATTTGCCTCTTTTGATCAATTATCTTTCTTTT 598
Query 595 GCCTCTGAATGTATTGGAATA 615
|||||||||| ||||||||||
Sbjct 599 GCCTCTGAATTTATTGGAATA 619
> AT2G37600.1 | Symbols: | Ribosomal protein L36e family protein
| chr2:15774245-15775374 REVERSE LENGTH=577
Length=577
Score = 398 bits (215), Expect = 4e-110
Identities = 311/356 (87%), Gaps = 12/356 (3%)
Strand=Plus/Plus
Query 75 ATGCCAACTCC-GCAAGTGAAGACCGGTTTGTTCGTTGGGTTGAACAAAGGACATGTTGT 133
||| ||||||| || |||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 71 ATGACAACTCCAGC-AGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGACACGTCGT 129
Query 134 CACCAGACGTGAATTAGCTCCTCGACCTC-GTTCTCGCAAAGGAAAAACGAGCAAGAGGA 192
|||||||||||| |||||||||| || | |||||||||||| ||||||||||||||||
Sbjct 130 CACCAGACGTGAGCTAGCTCCTCGTCC-CAATTCTCGCAAAGGGAAAACGAGCAAGAGGA 188
Query 193 CAATCTTTATCAG-AAACTTGATAAAGGAAGTTGCTGGTATGGCTCCCTATGAGAAGAGA 251
| || || || || |||| |||| | |||||| ||||| |||||||| ||||||||||||
Sbjct 189 CCATATTCATAAGAAAAC-TGATTAGGGAAGTAGCTGGAATGGCTCCTTATGAGAAGAGA 247
Query 252 ATCACTGAGCTTTTGAAGGTTGGTAAAGACAAACGTGCTCTTAAGGTTGCTAAGAGGAAG 311
|||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 248 ATCACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAG 307
Query 312 TTGGGAACCCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCCAGTACTCTCCGCAAA 371
||||| || ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 308 TTGGGTACTCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAG 367
Query 372 ATGAGGTCTGGTGGTGGTG--G-TGCAACTGAGAAGAAGAAGTGAGCATCATCTTA 424
||||||||| |||||||| | ||| |||||||||||| || || | |||||||
Sbjct 368 ATGAGGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGT-AG-A-CATCTTA 420
> AT5G02450.1 | Symbols: | Ribosomal protein L36e family protein
| chr5:533106-534656 FORWARD LENGTH=684
Length=684
Score = 285 bits (154), Expect = 3e-76
Identities = 271/326 (83%), Gaps = 14/326 (4%)
Strand=Plus/Plus
Query 95 GACCGGTTTGTTCGTTGGGTTGAACAAAGGACATGTTGTCACCAGACGTGAATTAGCTCC 154
||| || || ||||| ||| | ||||||||||| ||||| |||| ||| || | ||||
Sbjct 104 GACAGGCTTATTCGTGGGGCTAAACAAAGGACACGTTGTTACCAAACGCGAGCAACCTCC 163
Query 155 TCGACCTCGT-TC-TC-GCAAAGGAAAAACGAGCAAGAGGACAATCTTTATCA-GAAACT 210
||| || | | | | | ||||| ||||| ||||| ||||| || ||||||| ||| |
Sbjct 164 TCG-CC-C-TAACAACAGAAAAGGGAAAACAAGCAAAAGGACTATTTTTATCAGGAATC- 219
Query 211 TGATAAAGGAAGTTGCTGGT-ATGGCTCCCTATGAGAAGAGAATCACTGAGCTTTTGAAG 269
| || ||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 220 TCATCAAGGAAGTTGCGGGTCA-AGCTCCCTATGAGAAGAGGATCACTGAGCTTTTGAAG 278
Query 270 GTTGGTAAAGACAA-ACGTGCTCTTAAGGTTGCTAAGAGGAAGTTGGGAACCCACAAGAG 328
|||||||||||||| | | |||||||| ||||| ||| | ||||||||||| ||||||||
Sbjct 279 GTTGGTAAAGACAAGA-GAGCTCTTAAAGTTGCCAAGCGAAAGTTGGGAACTCACAAGAG 337
Query 329 AGCTAAGAGGAA-GAGAGAGGAGATGTCCAGTACTCTCCGCAAAATGAGGTCTGGTGGTG 387
|||||| | ||| ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 338 AGCTAA-ACGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGGTCTGGTGGTG 396
Query 388 GTGGTGCAACTGAGAAGAAGAAGTGA 413
||||||| | |||||||||||||||
Sbjct 397 CTGGTGCATCCGAGAAGAAGAAGTGA 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5