BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485770
Length=2452
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53760.1 | Symbols: GCP4, ATGCP4 | GAMMA-TUBULIN COMPLEX PRO... 3751 0.0
> AT3G53760.1 | Symbols: GCP4, ATGCP4 | GAMMA-TUBULIN COMPLEX PROTEIN
4 | chr3:19917854-19922365 REVERSE LENGTH=2667
Length=2667
Score = 3751 bits (2031), Expect = 0.0
Identities = 2174/2244 (97%), Gaps = 6/2244 (0%)
Strand=Plus/Plus
Query 1 CAATGTTGCACGAGCTTCTTCTAGCTCTCTTAGGCTTCACCGGCGATCTCATCGTCGACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 CAATGTTGCACGAGCTTCTTCTAGCTCTCTTAGGCTTCACCGGCGATCTCATCGTCGACG 159
Query 61 AGCGAGAGCAACGGAAAACCCTAGGCCTCGCTTTCAACTCCGATTCACCTCTCTCTGATG 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 160 AGCGTGAGCAACGGAAAACCCTAGGCCTCGCTTTCAACTCCGATTCACCTCTTTCTGATG 219
Query 121 AATGTACCTTCAAACTCGCTCCTGACATCTCCTTCATCGAACCCAGCGAAAGGGACTTGA 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 AATGTACATTCAAACTCGCTCCTGACATCTCCTTCATCGAACCCAGCGAAAGGGACTTGA 279
Query 181 TCGAGAGGTTGATCAAGCTAGGGTTCTACTATCGAGAGCTGGACCGGTTTGCGAAGAAGT 240
|||| |||||||||||| ||||||||||||||||||| || |||||||||||||||||||
Sbjct 280 TCGAAAGGTTGATCAAGTTAGGGTTCTACTATCGAGAACTCGACCGGTTTGCGAAGAAGT 339
Query 241 CTCGCAATTTGAGCTGGATTAGGTCTGTGACCAGTGTACATCCGTTGGAACGGGCTGATG 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 340 CTCGCAATTTGAGCTGGATTAGGTCTGTGACCAGTGTGCATCCGTTGGAACGGGCTGATG 399
Query 301 AATTGTCGAAGCAGAGTAGAGAGAAGAAGCCTAGCGTGTACCGTAGAGCCATTGCTAATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 AATTGTCGAAGCAGAGTAGAGAGAAGAAGCCTAGCGTGTACCGTAGAGCCATTGCTAATG 459
Query 361 GAATTGGGGAGATTCTTTCAGTCTATAGATCTGCGGTTCTTCACATTGAACAGAAGCTAT 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GAATTGGGGAGATTCTTTCGGTCTATAGATCTGCGGTTCTTCACATTGAACAGAAGCTAT 519
Query 421 TGGCGGAGACTACGCCTATTCTGGCTATGGTTACACAGGGGCTCAATAAGTTTTTCGTTC 480
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 520 TGGCGGAGACTACGCCTATTCTGGCTACGGTTACAGAGGGGCTCAATAAGTTTTTCGTTC 579
Query 481 TTTTCCCGCCCCTGTATGAGGTAATTCTTGAGATTGAGCGTGATGATGTTCGTGGAGGGC 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 580 TTTTCCCGCCCCTGTATGAGGTAATTCTTGAGATTGAGCGTGATGATATTCGTGGAGGGC 639
Query 541 AGCTTCTGAATGTATTGAATAAAAGGTGTCATTGTGGTGTGCCTGAATTGAGGACTTGTC 600
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 640 AGCTTCTTAATGTATTGAATAAAAGATGTCATTGTGGTGTGCCTGAATTGAGGACTTGTC 699
Query 601 TTCAAAGGCTTCTTTGGCATGGACATCAGATCATGTATAATCAGCTTGCGGCTTGGATGG 660
| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 700 TCCAAAGGCTTCTTTGGAATGGACATCAGGTCATGTATAATCAGCTTGCAGCTTGGATGG 759
Query 661 TCTATGGGATTCTCCAGGATCCTCATGGAGAATTTTTCATCAAGAGACAAGAAGATGGGG 720
||||||| ||||| |||||||||||||||||||||||||||||||| || || ||||| |
Sbjct 760 TCTATGGCATTCTTCAGGATCCTCATGGAGAATTTTTCATCAAGAGGCAGGACGATGGTG 819
Query 721 ATTTAGATCACCGCTCATCTCAGGAAG-AGATATCTGAAAAGTTGGCTCGTACCTCAGTT 779
|||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 820 ATTTAGATCATCGCTCATCTCAGGAAGAAG-TATCTGAAAAGTTGGCTCGTACCTCAGTT 878
Query 780 CATGAGACATCTTTAACTGATTGGCACTCTGGATTTCACATTTCTTTGGATATGTTACCT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 CATGAGACATCTTTAACTGATTGGCACTCTGGATTTCACATTTCTTTGGATATGTTACCT 938
Query 840 GATTATATTTCTATGCGTCTTGGTGAATCAATTCTTTTTGCGGGGAAAGCCATAAGAGTT 899
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 939 GATTATATTCCTATGCGCCTTGGTGAATCAATTCTTTTTGCGGGGAAAGCCATAAGGGTT 998
Query 900 TTGCGAAATCCCAGTCCTGCTTTCCAGTTCCAGAAGGACAAGAGTTTTCAGCAAACCATG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 999 TTGCGAAATCCCAGTCCTGCTTTCCAGTTCCAGAAGGACAAGAGTTTTCAGCAAACAATG 1058
Query 960 GGTGGCTCCCAGAGAATTCAG-GGATTTATGCATAGTGATTTCCCTGAAACGGAAACTGA 1018
|||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 1059 CGTGGCTCCCAGAGAATTC-GAGGATTTATGCATAGTGATTTCCCTGAAACAGAAACTGA 1117
Query 1019 GTCAGATGCAGATCTTACAGGGGGAGAGTTACTTCCACAATCTGAGGCAGACAAGATTGA 1078
|| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1118 GTTAGATGCAGATCTTACAGGGGGAGAGTTGCTTCCACAATCTGAGGCAGATAAGATTGA 1177
Query 1079 AGCTATGCTCAAAGAATTAAAGGAATCATCTGAGTTTCACAAGAGATCATTCGAGTGTAC 1138
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1178 AGCTATGCTCAAAGATTTAAAGGAATCATCTGAGTTTCACAAGAGATCATTTGAGTGCAC 1237
Query 1139 TGTTGATTCTGTTCGAGCAATAGCAGCCAGTCATCTTTGGCAGCTTGTCGTTGTGCGTGC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 TGTTGATTCTGTTCGAGCAATAGCAGCCAGTCATCTTTGGCAGCTTGTCGTTGTGCGTGC 1297
Query 1199 TGATCTCAGTGGTCATCTTAAAGCTCTGAAAGATTATTTCCTCTTAGAAAAAGGAGATTT 1258
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TGATCTCAATGGTCATCTTAAAGCTCTGAAAGATTATTTCCTCTTAGAAAAAGGAGATTT 1357
Query 1259 CTTTCAGTGCTTTCTGGAGGAGAGTCGTCAGTTGATGCGTTTGCCACCTCGCCAGTCAAC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 CTTTCAGTGCTTTCTGGAGGAGAGTCGTCAGTTGATGCGTTTGCCACCTCGCCAGTCAAC 1417
Query 1319 TGGAGAATCTGATCTTATGGTACCGTTTCAGTTGGCTGCAACAAAAACCATTGCGGAGGA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 TGGAGAATCTGATCTTATGGTACCGTTTCAGTTGGCTGCAACAAAAACCATTGCGGAGGA 1477
Query 1379 AGATAAGTATTTCTCTAGGGTATCCCTACGGATGCCGTCATTTGGAGTCACAGTCAGATC 1438
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1478 AGATAAGTATTTCTCTAGGGTATCCCTACGGATGCCTTCATTTGGAGTCACAGTCAGATC 1537
Query 1439 TTCTCAAGCTGACATGGCGAGATCTAAAGTATCTCTCGCCGGGAAGGCAAATCTTACATC 1498
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1538 TTCTCAAGCTGACATGGTGAGATCTAAAGTATCTCTCACCGGGAAGGCAAATCTTACATC 1597
Query 1499 AGACACCTCTGTGGATGGCTGGGACGCTATTGCGT-TGGAGTATTCTGTTGATTGGCCCA 1557
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1598 AGACACCTCTGTGGATGGCTGGGACGCTATTGC-TCTGGAGTATTCTGTTGATTGGCCCA 1656
Query 1558 TGCAACTGTTTTTCACTCAAGAAGTGCTTTCTAAGTATCTCAAGGTGTTCCAATATTTGA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 TGCAACTGTTTTTCACTCAAGAAGTGCTTTCTAAGTATCTCAAGGTGTTCCAATATTTGA 1716
Query 1618 TACGGCTAAAGAGAACTCAGATGGAATTGGAGAAATCATGGGCTTCTGTAATGCATCAAG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 TACGGCTAAAGAGAACTCAGATGGAATTGGAGAAATCATGGGCTTCTGTAATGCATCAAG 1776
Query 1678 ATCATATAGAATCTGCTCAACATCGGAAAGATGGTATAAACGGATCAACATCTCAACAAA 1737
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1777 ATCATATAGAATCTGCTCAACATCGAAAAGATGGTTTAAACGGATCAACATCTCAACAAA 1836
Query 1738 GAAGACAAGGAATACGACCCATGTGGCGTGTTAGAGAGCACATGGCATTTCTGATAAGGA 1797
|| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1837 GACGACAAGGAATACGACCCATGTGGCGTGTTAGAGAGCACATGGCGTTTTTGATAAGGA 1896
Query 1798 ATCTTCAGTTTTACATTCAGGTTGACGTGATAGAATCTCAATGGAAGGTGTTGCAAACTC 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1897 ATCTTCAGTTTTACATTCAGGTTGACGTGATAGAATCTCAATGGAAGGTGTTGCAAACTC 1956
Query 1858 ACATCCACGATTCTCAAGATTTCACTGAACTCGTTGGCTTCCATCAAGAGTATCTCTCCG 1917
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1957 ACATCCACGATTCTCAAGATTTCACTGAACTCGTTGGCTTCCATCAAGAGTACCTCTCCG 2016
Query 1918 CTCTTATTTCACAATCTTTCCTCGACATTGGTTCCGTCTCAAGGATACTCGATAGCATAA 1977
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2017 CTCTTATCTCTCAATCTTTCCTCGACATTGGTTCCGTCTCAAGGATACTTGATAGCATCA 2076
Query 1978 TGAAACTCTGTCTCCAGTTCTGCTGGAACATTGAGAGTCAAGAAAGCAATCCAAACACTT 2037
||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 2077 TGAAACTATGTCTCCAGTTCTGCTGGAACATTGAGAATCAAGAAAGCAACCCAAACACTT 2136
Query 2038 CGGAACTTGAAAACATAGCTGAGGAATTCAACAAGAAGTCGAATTCCTTGTACACCATAT 2097
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2137 CAGAACTTGAAAACATAGCTGAGGAATTCAACAAGAAGTCAAATTCCTTGTACACCATAC 2196
Query 2098 TGAGAAGCAGCAAACTCGCCGGGAGCCAGAGAGCCCCGTTCTTGAGACGTTTTCTTTTAC 2157
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2197 TGAGAAGCAGCAAACTCGCCGGGAGCCAGCGAGCCCCGTTCTTGAGACGTTTTCTTTTAC 2256
Query 2158 GCCTAAATTTCAATTCCTTTTACGAGGCAACTGCAAGGGGGGTGTTGAATGTTGTCCGAC 2217
| ||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 2257 GTCTAAACTTCAATTCCTTTTACGAGGCAACTGCAAGGGGCGTGTTAAACGTTGTCCGAC 2316
Query 2218 AACGCCCAGCTCTTCCATTGTAAA 2241
|||||||||| |||||||||||||
Sbjct 2317 AACGCCCAGCGCTTCCATTGTAAA 2340
Score = 174 bits (94), Expect = 3e-42
Identities = 111/119 (93%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 2269 AGCTATTGGTCTGATCCTCAAACCAGGATCACATGTCGCCACCAATGGAATATACATAAA 2328
||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2437 AGC-ATTTGTCTGATCCTCAAACCAGGATGACATGACGCCACCAATGGAATATACATAAA 2495
Query 2329 TATATGTTGACAGAGTTTTTGCTCACACGCCTTTCCTTTGTAAGAATCTGTGTGCTGTG 2387
||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 2496 TATATGTGGACAGAGTTCGTGCTCACACGCCTTTCCTTTGTAAGAATCTGTGTACTGTG 2554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121654836775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5