BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485774
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53800.1 | Symbols: Fes1B | Fes1B | chr3:19930861-19932892 F... 1757 0.0
> AT3G53800.1 | Symbols: Fes1B | Fes1B | chr3:19930861-19932892
FORWARD LENGTH=1346
Length=1346
Score = 1757 bits (951), Expect = 0.0
Identities = 1056/1108 (95%), Gaps = 2/1108 (0%)
Strand=Plus/Plus
Query 1 AAGAAGCGTAAATGGCGAACAATGGACCTAACTGGGACGGATTGCTCAAATGGAGCCTCT 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 71 AAGAAGCGTAAATGGCGAACAATGGACCTAACTGGGACGGATTACTCAAATGGAGCCTCT 130
Query 61 CCCATTCCGATGGATCTTCTTCTTCTAGCCGTATTAGTGAGGAAGATCGACAATGGTTTA 120
| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 131 CACATTCCGATGGAGCTTCCTCTTCTAGCCGTATAAGTGAGGAAGATCGACAATGGTTTG 190
Query 121 TAGAAGCTATGCAAGCACATACAATCGATTCAATTTCGCGTATGAAAGTGATATCTCAAA 180
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 191 TGGAAGCTATGCAAGCACATACAATCGATTCAATCTCTCGTATGAAAGTAATATCTCAAA 250
Query 181 TCATGAAGATGCCTGAACAAGTCTTGGAGGCTCAAGGAGTTACACCTGACGATCTTGAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 251 TCATGAAGATGCCTGAACAAGTCTTGGAGGCTCAAGGAGTTACACCTGATGATCTTGAAG 310
Query 241 GAATGTTGGATGAGCTGCAGGAACACGTTGAGTCAATCGATTTGGCCAATGATCTACACT 300
||||||||| |||||||||||||||||| ||||| || ||||||||||||||||| ||||
Sbjct 311 GAATGTTGGCTGAGCTGCAGGAACACGTCGAGTCGATAGATTTGGCCAATGATCTTCACT 370
Query 301 CCATTGGAGGTTTGGTTCCTCTCCTTAGCTATCTCATGAACTCTAATGCGAAGATTCGAG 360
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 371 CCATTGGAGGTTTGGTTCCTCTCCTTAGCTATCTCAAGAACTCTAATGCGAAAATTCGAG 430
Query 361 CAAAGTCTGCCGATGTTTTGACCACGGTTGTCCAAAACAATCCAAGAAGCCAGCAACTTG 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 431 CAAAGTCTGCCGATGTTTTGACTACGGTTGTCCAAAACAATCCAAGAAGCCAGCAACTTG 490
Query 421 TTATGGAAGCAAATGGGTTCGAGCCATTATTTACCAACTTTATTGCTGATCCCGACATTA 480
|||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||
Sbjct 491 TTATGGAAGCAAATGGGTTCGAACCATTATTAACTAACTTTATTGCTGATCCTGACATTA 550
Query 481 GAGTCCGGACCAAGGCACTCGGTGCTATATCTTCTCTTATCCGTAACAACCAACACGGGA 540
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 551 GAGTCCGGACCAAGGCACTCGGGGCTATATCTTCTCTTATCCGTAACAACCAACCCGGGA 610
Query 541 TGACAGCATTCCGTCTGGCAAATGGTTACGCTGGTTTGCGAGACGCTTTGGTCTCTGATA 600
| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 611 TTACAGCATTCCGTCTGGCAAATGGTTATGCTGGCCTGCGAGACGCTTTGGTCTCTGATA 670
Query 601 CCGTTAGATTCCAATGAAAAGCCTTGAACTTGATTCACTATCTCCTCCAAGAAAGCAACT 660
|||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 671 CCGTTAGATTCCAAAGAAAAGCGTTGAACTTGCTTCACTATCTTCTCCAAGAAAGCAACT 730
Query 661 CAGACTGTAAAATCGTTAGAGATCTTGGATTCCCTCGCATAATGATCCACCTAGCATCCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CAGACTGTAAAATCGTTAGAGATCTTGGATTCCCTCGCATAATGATCCACCTAGCATCCA 790
Query 721 ACCAAGATTTTGAAGTCCGAGAATTCGCCCTTCGTGGTCTCCTAGAGCTCGCCCGTGAAG 780
|||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||
Sbjct 791 ACCAAGATTTTGAAGTTCGGGAATTCGCTCTTCGTGGTCTCCTAGAGCTTGCCCGTGAAG 850
Query 781 AATCTGAT-AGAAACCTTGACAGAGCGGATGTGAATCTAAGACAACTTCTTGAGGAGAGA 839
|||||| | ||||||||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct 851 AATCTG-TGAGAAACCTTGATAGAGGGGATGTGAATCTAAGACAGCTTCTTGAGGAGAGA 909
Query 840 ACAAGAAGAATAATTGTGATGTCGGACGAAGACCTTTGTGCAGCTAGAGAAGAAAGACAG 899
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 910 ACAAGACGAATAATTGTGATGTCGGACGAAGATCTTTGTGCAGCTAGAGAAGAAAGACAG 969
Query 900 CTAGTGGATAGTCTTTGGACCGTGTGCTATGATGAACCGTCCCATCTAAGAGAAAGAGGC 959
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 970 CTAGTGGATAGTCTTTGGACCGTGTGTTATGATGAACCGTCCCTTCTAAGAGAAAGAGGT 1029
Query 960 CTGGTTTACCTCCCTTCTGATGACGAGCTGGCTCCTGATGTGGTAAGGGACCGCTTTGAA 1019
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1030 CTGGTCTACCTCCCTTCTGACGACGAGCTGGCTCCTGATGTGGTTAGGGACCGCTTTGAA 1089
Query 1020 CCTCCTCTAAGGGCTTGGGCTGCAAGACGACATGATGAAACGAGTGAATCACCAGTTCCA 1079
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1090 CCTCCTCTAAGGGCTTGGGCTGCAAGACGACATGATGAAACGAGTGAATCCCCGGTTCCA 1149
Query 1080 CTTCTTCTTGGTCCTGCACCGTGATCTC 1107
||||||||||||||||||||||||||||
Sbjct 1150 CTTCTTCTTGGTCCTGCACCGTGATCTC 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5