BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485778
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53850.1 | Symbols: | Uncharacterised protein family (UPF04... 1112 0.0
> AT3G53850.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr3:19948131-19949288 REVERSE LENGTH=890
Length=890
Score = 1112 bits (602), Expect = 0.0
Identities = 751/817 (92%), Gaps = 33/817 (4%)
Strand=Plus/Plus
Query 1 AATGTCAAAGGAGAAAGAACGAAGAAGCTTAGCTTATGATCGAAGCTTAGCCGTTTCGGG 60
|||||||||||||||| || ||||||||||||||||| |||||| || ||||||||||||
Sbjct 17 AATGTCAAAGGAGAAACAAGGAAGAAGCTTAGCTTATAATCGAATCTAAGCCGTTTCGGG 76
Query 61 AAATTCTATTTGTAGGTGACAAAATCTTCTTCTA-GGTTCCTTCTCAGCTATGAATTTCC 119
||||||| |||||||||||||||||| |||| || |||| |||| ||||||||||||||
Sbjct 77 AAATTCTGTTTGTAGGTGACAAAATCCTCTTATAGGGTT-ATTCTTAGCTATGAATTTCC 135
Query 120 TCTGCATTTTCtttttttCCCCGCCAAAATTTCTCCTGAAGCAAATGTAGC-tttt--tt 176
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 136 TCTGCAATTTCTTTTTTTCCCCGCCAAAATTTCTCCTGAAGCAAATGTAGCTTTTTACTT 195
Query 177 --t---C----------TTCGATTTTGTTCCTCTTTCCTCGCTGATTTTGTCGGAATTTC 221
| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GCTGAACTAGGGTTTTGTTCGATTTTGTTCCTCTTTCCTCGCTGATTTTGTCGGAATTTC 255
Query 222 TGGGTTTGGTAAAAGAAATTGCCAAATTGGAGCCATTGTTGATTCACATGAAGAAGCTTT 281
||||||||| ||| | | ||||||||| | || |||||| | |||||||||||||
Sbjct 256 TGGGTTTGG--GAAG--A--G--AAATTGGAGTCGTTATTGATTGAAATGAAGAAGCTTT 307
Query 282 TCGGAGGTCCCGGAACTGTGTGTGGTCTGTTACTGAGAATCGGACAATGTGCTTCAGCTG 341
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TAGGAGGTCCGGGAACTGTGTGTGGTCTGTTACTGAGAATCGGACAATGTGCTTCAGCTG 367
Query 342 CGGCTTCTATCGGCGTTATGGTCTCTGCCAAGGAGTTCTCTGTTCACACTGCTTTTTGCT 401
| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 368 CTGCTTCAATCGGCGTTATGGTCTCTGCTAAAGAGTTCTCTGTTCACACTGCTTTTTGCT 427
Query 402 ACTTGATTGCATCAATGGGTCTTCAATTGTTGTGGAGCTTTGGGCTAGCTTGTCTTGATG 461
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 428 ACTTGATTGCGTCAATGGGTCTTCAATTGTTGTGGAGCTTTGGGCTAGCATGTCTTGATG 487
Query 462 TTTATGCTCTCAGGGGCAAGAAAGATCTCCAAAACCCTATCTTGGTTAGCTTATTCGTCG 521
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TTTATGCTCTCAGGGGAAAGAAAGATCTCCAAAACCCTATCTTGGTTAGCTTATTCGTCG 547
Query 522 TTGGTGATTGGGTGACTGCAATGTTATCTCTTGCAGCTGCATGTTCATCAGCAGGAGTTG 581
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TTGGTGATTGGGTGACGGCAATGTTATCTCTTGCAGCTGCATGTTCATCAGCAGGAGTTG 607
Query 582 TTGTCTTGTATGAAAAAGATATCAAGTATTGCAATACTCAAAGCCAATATCCATGTCTTA 641
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TAGTCTTGTATGAAAAAGATATCAAGTATTGCAATACTCAAAGCCAATATCCATGTCTTA 667
Query 642 GGTATGAAGTAGCTGTAGCGCTTTCGTTCGTCACTTGGATTCAGATCGCTGTTTCTTCTC 701
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 668 GGTATGAAGTAGCTGTAGCGCTTTCTTTCGTCACTTGGATCCAGATTGCTGTTTCTTCTC 727
Query 702 ATGTCACATTTTGGATCTTAGCCTCGGTTTAGTT--T--CGCAAAGAAA-CCCAACTTTT 756
|||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 728 ATGTCACATTTTGGATCTTAGCCTCGGTTTAGTTAGTTTCGCAAAGAACTCCCAACTTTT 787
Query 757 TCTTCTTCTTGGAATGTTGAGACATCTCTGTAGCTTT 793
||||||||||||||||||||||||||| |||||||||
Sbjct 788 TCTTCTTCTTGGAATGTTGAGACATCTTTGTAGCTTT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5