BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485780
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53870.1 | Symbols: | Ribosomal protein S3 family protein |... 1404 0.0
AT2G31610.1 | Symbols: | Ribosomal protein S3 family protein |... 1027 0.0
AT5G35530.1 | Symbols: | Ribosomal protein S3 family protein |... 760 0.0
> AT3G53870.1 | Symbols: | Ribosomal protein S3 family protein
| chr3:19951488-19952961 FORWARD LENGTH=988
Length=988
Score = 1404 bits (760), Expect = 0.0
Identities = 914/985 (93%), Gaps = 23/985 (2%)
Strand=Plus/Plus
Query 1 GAGATTACGCCGCGCATTTTTAGGGTTTCAGAGATCGGCAAATTTTCACATTCACAAACA 60
||||||||||||| |||||||||||||||||| || |||| ||| ||||||| ||||||
Sbjct 1 GAGATTACGCCGCTCATTTTTAGGGTTTCAGATATAGGCAGATTCTCACATTTGCAAACA 60
Query 61 TGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCAGACGGTGTGTTCTACGCTGAAT 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCGGACGGTGTGTTCTACGCTGAAT 120
Query 121 TGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGG 180
Query 181 TTACTCCAATGAGGACTGAGATTATCATCAGAGCGACACGTACTCAGAATGTTCTCGGTG 240
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 TTACTCCTATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGGTG 240
Query 241 AGAAGGGAAGGAGAATTAGGGAATTGACATCCCTTGTCCAGAAGAGATTCAAGTTTCCTG 300
||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 241 AGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAG 300
Query 301 TAGACAGTGTTGAGCTTTATGCCGAGAAGGTCAACAACAGAGGTCTCTGTGCCATTGCTC 360
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 301 TTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTC 360
Query 361 AAGCTGAATCTCTACGATACAAGCTTCTCGGTGGTCTCGCTGTTCGTAGGGCTTGCTATG 420
| ||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 AGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGGGCTTGCTATG 420
Query 421 GTGTATTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTCATTGTGAGTGGAA 480
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 421 GTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTTATCGTGAGTGGAA 480
Query 481 AGCTCCGTGCAGCAAGAGCCAAGTCTATGAAGTTCAAGGATGGTTACATGGTGTCATCTG 540
|||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 481 AGCTTCGTGCTGCCAGAGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTG 540
Query 541 GTCAACCAACTAAGGAATACATTGACTCTGCAGTGAGACATGTTTTGCTTAGACAGGGTG 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 541 GTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAGGTG 600
Query 601 TGTTGGGAATCAAGGTTAAGGTTATGCTTGATTGGGATCCTAAGGGCAAATCCGGACCAA 660
|||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 601 TGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGCATATCAGGACCAA 660
Query 661 TGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAGGAAGAAGAGACT-TACGT- 718
||||||||||||||||||||||||||||||||||||||| ||||||||| | | | |
Sbjct 661 AGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAAGAAGAAGAGGCCAT-C-TA 718
Query 719 TGCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCATAGCGGAAGCTCCACTTACAGCCGT 778
|||||||||||||||||||||||||||||||||| |||| || || ||||| ||||||||
Sbjct 719 TGCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCGTAGCAGATGCACCACTCACAGCCGT 778
Query 779 AGATTACCCAGCGATGATCCCAGTCGCCTAGAAA-AATCCTT-GTACTAGTCGATGT--T 834
||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||| |
Sbjct 779 AGATTACCCTGCGATGATCCCAGTCGCCTA-AAAGAATCCTTTGTACTAGTCGATGTGAT 837
Query 835 TT------CAACTGTTCTTCCTCTTTTGACAGATTATAGCTTCTCGTATCTTCGAATCAG 888
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTTGTTTTCAACTGTTCTTGCTCTTTTGACAGATTATAGCTTCTCGTATCTTCGAATCAG 897
Query 889 ACACGTTTCCTCTGTTCTTATTCGAAAATTATCTCAAGTTTCCAATGTTGAAAACTTGAA 948
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 898 ACACGTTTCCTCTGTTCTTATTCGAAAATTATCTCAAGTTTCCATTGTTGAAAA----A- 952
Query 949 ATAGCCCTTTTTAGTTTCATAAATC 973
||||||||||||||||||||||
Sbjct 953 ---GCCCTTTTTAGTTTCATAAATC 974
> AT2G31610.1 | Symbols: | Ribosomal protein S3 family protein
| chr2:13450302-13451923 FORWARD LENGTH=1089
Length=1089
Score = 1027 bits (556), Expect = 0.0
Identities = 720/799 (90%), Gaps = 11/799 (1%)
Strand=Plus/Plus
Query 19 TTTAGGGTTTCAGAGATCGGCAAATTTTCACATTCACAAACATGACGACTCAGATCAGCA 78
||||||||||||||||||||| |||||||||| ||||| ||| ||||||| |||||||
Sbjct 42 TTTAGGGTTTCAGAGATCGGCTGATTTTCACATCCACAAGTATGGCGACTCAAATCAGCA 101
Query 79 AGAAGAGAAAGTTTGTAGCAGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAA 138
||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||
Sbjct 102 AGAAGAGAAAGTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAA 161
Query 139 GAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAATGAGGACTG 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 GAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAATGAGGACTG 221
Query 199 AGATTATCATCAGAGCGACACGTACTCAGAATGTTCTCGGTGAGAAGGGAAGGAGAATTA 258
|||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 222 AGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGGTGAGAAGGGGAGGAGAATTA 281
Query 259 GGGAATTGACATCCCTTGTCCAGAAGAGATTCAAGTTTCCTGTAGACAGTGTTGAGCTTT 318
||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 282 GGGAATTGACATCTCTTGTCCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTCT 341
Query 319 ATGCCGAGAAGGTCAACAACAGAGGTCTCTGTGCCATTGCTCAAGCTGAATCTCTACGAT 378
|||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 342 ATGCTGAGAAGGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTACGTT 401
Query 379 ACAAGCTTCTCGGTGGTCTCGCTGTTCGTAGGGCTTGCTATGGTGTATTGAGGTTTGTTA 438
||||||||||||||||||| |||||||| ||||| || |||||||| ||||| |||||||
Sbjct 402 ACAAGCTTCTCGGTGGTCTTGCTGTTCGCAGGGCCTGTTATGGTGTTTTGAGATTTGTTA 461
Query 439 TGGAGAGTGGAGCTAAGGGATGCGAGGTCATTGTGAGTGGAAAGCTCCGTGCAGCAAGAG 498
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| | |
Sbjct 462 TGGAGAGTGGAGCTAAGGGATGTGAGGTCATCGTGAGTGGAAAGCTCCGTGCTGCACGTG 521
Query 499 CCAAGTCTATGAAGTTCAAGGATGGTTACATGGTGTCATCTGGTCAACCAACTAAGGAAT 558
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 522 CTAAGTCCATGAAGTTCAAGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAGGAAT 581
Query 559 ACATTGACT-CTGCAGTGAGACATGTTTTGCTTAGACAGGGTGTGTTGGGAATCAAGGTT 617
|||| || | |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 582 ACATCGA-TGCTGCAGTGAGACATGTTTTGCTCAGACAGGGGGTGTTGGGAATCAAGGTG 640
Query 618 AAGGTTATGCTTGATTGGGATCCTAAGGGCAAATCCGGACCAATGACACCATTGCCTGAT 677
||| | |||||||| ||||| |||| ||||||||| ||||||| ||||||||||||||||
Sbjct 641 AAGATCATGCTTGACTGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCTGAT 700
Query 678 GTTGTGATCATTCATTCTCCTAAGGAAGAAGA-GACTTACGT-TGCACCTGCTCAGGTTG 735
||||||||||||||| ||||||| || || | | || || | |||||||||||||| ||
Sbjct 701 GTTGTGATCATTCATGCTCCTAAAGATGATGTTGTCT-AC-TCTGCACCTGCTCAGGCTG 758
Query 736 CTGCCCCGGCTGCTCTCATAGCG-GAAGCTCCACTTACAGCCGTAGATTACCCAGCGATG 794
|||| || | | |||| | || ||||||||||| ||| ||||||||||||| | ||||
Sbjct 759 CTGCTCCAGTTACTCTTGT-GCAAGAAGCTCCACTCACAACCGTAGATTACCCTGAGATG 817
Query 795 AT-CC-C-AGTCGCCTAGA 810
|| || | ||| |||||||
Sbjct 818 ATTCCTCCAGTGGCCTAGA 836
> AT5G35530.1 | Symbols: | Ribosomal protein S3 family protein
| chr5:13710111-13712288 REVERSE LENGTH=1087
Length=1087
Score = 760 bits (411), Expect = 0.0
Identities = 641/751 (85%), Gaps = 20/751 (3%)
Strand=Plus/Plus
Query 54 ACAAACATGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCAGACGGTGTGTTCTAC 113
|||| |||| |||| ||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct 91 ACAATCATGGCGACCCAGATCAGCAAGAAGAGAAAGTTCGTAGCCGATGGTGTGTTTTAC 150
Query 114 GCTGAATTGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAG 173
|||||| | ||||||||||| || |||||||| || ||||||||||||||||||||||||
Sbjct 151 GCTGAACTCAATGAGGTTCTAACCAGAGAGCTTGCTGAGGATGGTTACTCTGGTGTTGAG 210
Query 174 GTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCGACACGTACTCAGAATGTT 233
||| | || ||||| ||| | |||||||| ||||| ||||| || |||||||| || |||
Sbjct 211 GTTCGCGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTT 270
Query 234 CTCGGTGAGAAGGGAAGGAGAATTAGGGAATTGACATCCCTTGTCCAGAAGAGATTCAAG 293
|||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 271 CTCGGTGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTCAAA 330
Query 294 TTTCCTGTA-GACAGTGTTGAGCTTTATGCCGAGAAGGTCAAC-AACAGAGGTCTCTGTG 351
|||||| | |||||||||||||||||||| |||||||| | ||||||||||| ||||
Sbjct 331 TTTCCT-CAGGACAGTGTTGAGCTTTATGCTGAGAAGGT-TGCTAACAGAGGTCTTTGTG 388
Query 352 CCATTGCTCAAGCTGAATCTCTACGATACAAGCTTCTCGGTGGTCTCGCTGTTCGTAGGG 411
| |||||||| ||||| ||||| || ||||||||||| |||||||| |||||||||||||
Sbjct 389 CTATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTAGGG 448
Query 412 CTTGCTATGGTGTATTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTCATTG 471
| ||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 449 CGTGCTATGGTGTTTTAAGGTTTGTTATGGAGAGTGGAGCTAAAGGATGCGAAGTCATTG 508
Query 472 TGAGTGGAAAGCTCCGTGCAGCAAGAGCCAAGTCTATGAAGTTCAAGGATGGTTACATGG 531
|||||||||| |||||||| ||| | || ||||| |||||||||||||||||||||||||
Sbjct 509 TGAGTGGAAAACTCCGTGCTGCACGTGCTAAGTCGATGAAGTTCAAGGATGGTTACATGG 568
Query 532 TGTCATCTGGTCAACCAACTAAGGAATACATTGACT-CTGCAGTGAGACATGTT-TTGCT 589
| || || ||||| ||||| |||||||||||||| | ||||||| || |||||| || ||
Sbjct 569 TTTCCTCAGGTCAGCCAACCAAGGAATACATTGA-TGCTGCAGTTAGGCATGTTCTT-CT 626
Query 590 TAGACAGGGTGTG-TTGGGAATCAAGGTTAAGGTTATGCTTGATTGGGATCCTAAGGGCA 648
||||||||||||| || || ||||||| ||| | |||||||| ||||| || |||||||
Sbjct 627 TAGACAGGGTGTGCTT-GGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCA 685
Query 649 AATC-CGGACCAATGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAGGAAGAA 707
|| | ||||| ||||||||||||||||||||||||||||| ||| | || || |||||
Sbjct 686 AA-CAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACACCGAAAGAAGAT 744
Query 708 GA-G-ACTTACGTTGCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCATAGCGGAAGCTC 765
|| | | | || |||||||||||||||||| | | | |||||| | || |||||||||
Sbjct 745 GATGTA-T-ACATTGCACCTGCTCAGGTTGTTACTCAAGCTGCTTTTGTACCGGAAGCTC 802
Query 766 CACTTA-C-AGCCGTAGATTACCCAGCGATG 794
|| ||| | | || |||||| ||||| |||
Sbjct 803 CA-TTAACCA-CCACAGATTATCCAGCAATG 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5