BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485781
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53880.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1524 0.0
AT2G37790.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 667 0.0
> AT3G53880.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr3:19953173-19955290 FORWARD LENGTH=1132
Length=1132
Score = 1524 bits (825), Expect = 0.0
Identities = 951/1011 (94%), Gaps = 11/1011 (1%)
Strand=Plus/Plus
Query 1 TTTCGTAAAAGGTTCACCAGATCTAAGTCGAAC-TCATAAAAGCTCTGACAATGGCGGAC 59
||||||||||||||| | ||||||||||| || || | |||||||||||||||||||||
Sbjct 17 TTTCGTAAAAGGTTCTCGAGATCTAAGTCTCACTTC-T-AAAGCTCTGACAATGGCGGAC 74
Query 60 GAAATCGGATTCTTCCAACTCAACACCGGAGCAAAGATCCCATCCGTCGGTCTCGGGACA 119
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 75 GAAATCGGATTCTTCCAACTCAACACCGGAGCAAAGATCCCATCGGTTGGTCTCGGGACA 134
Query 120 TGGCAAGCTGCTCCTGGCGTCGTTGGAGACGCCGTCGCCGCCGCTGTGAAGATTGGATAT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TGGCAAGCTGCTCCTGGCGTCGTTGGAGACGCCGTCGCCGCCGCTGTGAAGATTGGATAT 194
Query 180 CAGCATATTGATTGTGCTTCAAGATATGGCAATGAAATTGAGATCGGGAAAGTTCTGAAG 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 195 CAGCATATTGATTGTGCTTCAAGATATGGCAATGAAATTGAGATTGGGAAAGTTCTGAAG 254
Query 240 AAGTTGTTTGATGATGGCGTAGTGAAGCGTGAGAAGCTGTTCATCACATCAAAAATCTGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 AAGTTGTTTGATGATGGCGTAGTGAAGCGTGAGAAGCTGTTCATCACATCAAAAATCTGG 314
Query 300 TTGACAGATCTTGATCCTCCAGATGTGCAAGAGGCATTGAACAGAACTCTACAGGATCTG 359
||||| |||||||| ||||| ||||| || || ||||||||||||||||| |||||||||
Sbjct 315 TTGACTGATCTTGACCCTCCGGATGTACAGGACGCATTGAACAGAACTCTTCAGGATCTG 374
Query 360 CAGCTTGATTACGTCGATCTGTATCTCATGCACTGGCCTGTTCGGTTGAAGAAGGGCGCT 419
||||||||||| || ||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 375 CAGCTTGATTATGTTGATTTGTATCTCATGCACTGGCCTGTTCGGTTGAAGAAAGGTACT 434
Query 420 GTTGACTTTAAGCCTGAGAACATTATGCCTATCGATATTCCTAGCACATGGAAAGCAATG 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 435 GTTGACTTTAAGCCTGAGAACATTATGCCTATCGATATTCCGAGCACATGGAAAGCAATG 494
Query 480 GAAGCACTG-TATGATTCTGGCAAGACACGAGCCATTGGCGTAAGTAATTTCTCTACAAA 538
||||||||| | |||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 495 GAAGCACTGGT-TGATTCAGGCAAGGCAAGAGCCATTGGCGTAAGTAATTTCTCTACAAA 553
Query 539 GAAACTCTCAGATCTTGTGGATACTGCTTGTGTTCCTCCCGCTGTAAACCAGGTGGAATG 598
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 554 GAAACTCTCAGATCTTGTGGAGGCTGCTCGTGTTCCTCCCGCTGTAAACCAGGTGGAATG 613
Query 599 TCATCCTTCATGGCAACAACATAAGCTACATGAGTTCTGCAAGTCCAAAGGGATACACTT 658
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 614 TCATCCTTCATGGCAACAACATAAGCTACATGAGTTTTGCAAGTCCAAAGGGATCCACCT 673
Query 659 GTCAGGATATTCGCCATTGGGTTCTCCTGGAACAACGTGGGTGAAGGCCGATGTTTTAAA 718
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 674 CTCAGGATATTCGCCATTGGGATCTCCTGGAACAACGTGGGTGAAGGCCGATGTTTTAAA 733
Query 719 GAGTCCGGTTATTGAAATGGTTGCAAAAGAACTCGGGAAGTCCCCCGCACAAACCGCTCT 778
||||||||||||||||||| |||| |||||| |||||||||| |||||||||||||| ||
Sbjct 734 GAGTCCGGTTATTGAAATGATTGCTAAAGAAATCGGGAAGTCTCCCGCACAAACCGCGCT 793
Query 779 TCGATGGGGACTTCAAATGGGTCATAGTATACTTCCCAAAAGCACAAATGAAA-ATAGAA 837
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 794 TCGATGGGGACTTCAAATGGGTCATAGTATACTTCCCAAAAGCACAAATGAAGGA-AGAA 852
Query 838 TCAGAGAGAA-TTTCGATGTATTGGGATGGTCAATCTC-AGAAGAAATGTTTGTCAAGTT 895
|||||||||| ||| ||||| ||||||||||| || || | |||||||||||| ||||||
Sbjct 853 TCAGAGAGAACTTT-GATGTCTTGGGATGGTCTAT-TCCAAAAGAAATGTTTGACAAGTT 910
Query 896 TTCCAAGATAGAACAGGTTAGGTTAGTCCAAGGCACATCGTTTGTTCATGAGACATTGAG 955
|||||||||||| |||| |||||||||||||||||| ||||||||||||||||| |||||
Sbjct 911 TTCCAAGATAGAGCAGGCTAGGTTAGTCCAAGGCACGTCGTTTGTTCATGAGACGTTGAG 970
Query 956 TCCTTATAAGACACTTGAAGAGCTTTGGGATGGTGAGATATGAATCATAAG 1006
||||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 971 TCCTTATAAAACACTTGAAGAGCTTTGGGATGGTGAGATCTGAATCAAAAG 1021
> AT2G37790.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr2:15838764-15840932 FORWARD LENGTH=1199
Length=1199
Score = 667 bits (361), Expect = 0.0
Identities = 781/979 (80%), Gaps = 47/979 (5%)
Strand=Plus/Plus
Query 42 GCTCTGACAATGGCGGACGAAATCGGATTCTTCCAACTCAACACCGGAGCAAAGATCCCA 101
||| |||||||||| || ||||| ||||||| |||||||||||||||| ||||| |||
Sbjct 66 GCTTTGACAATGGCAGAGGAAATTAGATTCTTTGAACTCAACACCGGAGCGAAGATACCA 125
Query 102 TCCGTCGGTCTCGGGACATGGCAAGCTGCTCCTGG-CGTCGTTGGAGACGCCGTCGCCGC 160
||||||||||| || || ||||| || | |||||| | |||| ||| |||| |||| |||
Sbjct 126 TCCGTCGGTCTAGGAACGTGGCAGGCCGATCCTGGTC-TCGTCGGAAACGCTGTCGACGC 184
Query 161 CGCTGTGAAGATTGGATATCAG-CATATTGATTGTGCTTC-AAGATATGGCAATGAAATT 218
|||||||||||||| |||| | || ||||||||||| || || |||||||||||||
Sbjct 185 TGCTGTGAAGATTGGTTATC-GTCACATTGATTGTGC-TCAAATCTATGGCAATGAAAAA 242
Query 219 GAGATCGGGAAAGTTCTGAAGAAGTTGTTTGATGATGGCGTAGTGAAGCGTGA-GAAGCT 277
||||| ||| ||| |||||||| |||||||||| ||| || || |||||||| ||| |
Sbjct 243 GAGATTGGGTTAGTCCTGAAGAAATTGTTTGATGGTGGAGTTGTTAAGCGTGAGGAA-AT 301
Query 278 GTTCATCACATCAAAAATCTGGTTG-ACAGATCTTGATCCTCCAGATGTGCAAGAGGCA- 335
|||||||||||| ||| | ||| || || ||| |||||||| ||| |||| ||||||
Sbjct 302 GTTCATCACATCCAAACTATGG-TGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCAC 360
Query 336 TTGAACAGAACTCTACAGGATCTGCAGCTTGATTACGTCGATCTGTATCTCATGCACTGG 395
|| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 361 TT-AATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCATTCACTGG 419
Query 396 CCTGTTCGGTTGAAGAAGGGCGCTGTTGACTTTAAGCCTGAGAACATTATGCCTATC-GA 454
|||||| | | ||||| || || || |||||| || ||||||||| |||| | | ||
Sbjct 420 CCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAGAACATTTTGCC-AACTGA 478
Query 455 TATTCCTAGCACATGGAAAGCAATGGAAGCACTGTATGATTCTGGCAAGACACGAGCCAT 514
|||||||||||||||||||||||||||| |||| | |||||| |||||| | || || ||
Sbjct 479 TATTCCTAGCACATGGAAAGCAATGGAATCACTCTTTGATTCAGGCAAGGCCCGTGCTAT 538
Query 515 TGGCGTAAGTAATTTCTC-TACAAAGAAACTCTCAGATCT-TGTGGATACTG-CTTGTGT 571
||| |||||||||||||| | ||||||||||| ||||||| | ||| | || || ||||
Sbjct 539 TGGTGTAAGTAATTTCTCCT-CAAAGAAACTCGCAGATCTCT-TGG-TGGTGGCTCGTGT 595
Query 572 TCCTCCCGCTGTAAACCAGGTGGAATGTCATCCTTCATGGCAACAACATAAGCTACATG- 630
|||||||||||| ||||||||||| ||||| ||||||||||||||| | ||| || |
Sbjct 596 TCCTCCCGCTGTTAACCAGGTGGAGTGTCACCCTTCATGGCAACAAAACGTGCT-CAGGG 654
Query 631 AGTTCTGCAAGTCCAAAGG-GATACA-CTTGTCAGGATATTCGCCATTGGGTTCTCCTGG 688
| |||||||| || ||||| | | || || ||||| || || || ||||||||||| ||
Sbjct 655 ATTTCTGCAAATCTAAAGGCGTT-CATCTC-TCAGGGTACTCTCCTTTGGGTTCTCCAGG 712
Query 689 AACAACGTGGGTGAA-G-GCCGATGTTTTAAAGAGTCCGGTTATTGAAATGGT-T-GCAA 744
|||||||||| | || | || |||||||| |||| || || ||| |||| | ||
Sbjct 713 AACAACGTGGCT-AACGAGC-GATGTTTTGAAGAACCCTATTCTTGG--TGGTGTTGCTG 768
Query 745 AAGAA-CTCGGGAAGTCCCCCGCACAAACCGCTCTT-CGATGGGGACTTCAAATGGGTCA 802
| ||| ||||| ||| | || ||||| || || || ||||| || |||||||||||
Sbjct 769 A-GAAGCTCGGCAAGACTCCTGCACAGGTTGCA-TTACGCTGGGGTCTCCAAATGGGTCA 826
Query 803 TAGTATACTTCCCAAAAGCACAAATGAAAATAGAATCAGAGAGAATTTCGATGTATTGGG 862
||| | ||||| |||||||| ||||| | || |||| | ||||||||||||| ||
Sbjct 827 AAGTGTTCTTCCAAAAAGCACCCATGAAGACAGGATCAAACAGAATTTCGATGTTTTCA- 885
Query 863 A-TGGTCAAT-CTCAGAAGAAATGTTTGTC-AAGTTTTCCAAGATAGAACAGGTTAGGTT 919
| ||||| || | | ||||| ||||| || |||||||| |||| | ||||| ||||||
Sbjct 886 ACTGGTCCATACCC-GAAGACATGTTA-TCCAAGTTTTCTGAGATTGGACAGGGTAGGTT 943
Query 920 AGTCCAAGGCACATCGTTTGTTCATGAGACATTGAGTCCTTATAAGACACTTGAAGAGCT 979
|| | ||||| || |||||||||||||| |||||| ||||||| |||||||| ||
Sbjct 944 GGTGCGAGGCATGTCATTTGTTCATGAGAC---GAGTCCATATAAGAGTCTTGAAGAACT 1000
Query 980 TTGGGATGGTGAGATATGA 998
||||| ||||||||||||
Sbjct 1001 CTGGGACGGTGAGATATGA 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5