BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485785
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53940.1 | Symbols: | Mitochondrial substrate carrier famil... 2145 0.0
AT2G37890.1 | Symbols: | Mitochondrial substrate carrier famil... 693 0.0
> AT3G53940.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr3:19971019-19973769 REVERSE LENGTH=1542
Length=1542
Score = 2145 bits (1161), Expect = 0.0
Identities = 1410/1521 (93%), Gaps = 53/1521 (3%)
Strand=Plus/Plus
Query 1 TTTACCAAAATACCCTTCTGCCTTCGCAGACCAGGTTTTAGGGGTTTCTTTAGGGTTTAC 60
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3 TTTACCAAAACACCCTTCTGCCTTCGCAGACCAGGTTTTAGGGGTTTCTCTAGGGTTTAC 62
Query 61 CTTCTCCACGACGA-TT-T-C--TC---CAATCTCCGATCAC----A---A-AAA----- 99
|||||||||||||| || | | || |||||||||||||| | | |||
Sbjct 63 CTTCTCCACGACGATTTCTCCAATCTGACAATCTCCGATCACAAAAATTCAGAAACCCTT 122
Query 100 T-CGCTTTAATTGATGCGACTTCATCTTCCA-CATCCGCCGAATCAACCACAGAGTAATC 157
| ||||||||||||||||| |||| |||||| | ||||||| ||||||||||||||||||
Sbjct 123 TCCGCTTTAATTGATGCGAATTCAGCTTCCATC-TCCGCCGCATCAACCACAGAGTAATC 181
Query 158 TCACAGAGAGAAAGATATTTGAATATGGAAGCTCGAGTCGGTGTAGTGGTAGAAGGAGGA 217
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 182 TCACAGAGAGAAAGAGATTTGAATATGGAAGCTCGAGTCGGTGTAGTGGTGGAAGGAGGA 241
Query 218 CAGAGAGCTCTTAATACAGCCACCGCCACCGCCGTGCATAACAGTGTTGTTGACGCCGGA 277
|||||||||||||||||||||||| |||||||||| ||||||| || || |||||||||
Sbjct 242 CAGAGAGCTCTTAATACAGCCACCACCACCGCCGTTCATAACACCGTCGTAGACGCCGGA 301
Query 278 AACAGGAAGCTGTTACAGCAACAACCGCAGACG---CAGACACAAAGCTGCCATCAACAT 334
|||||||| || |||||||||||||| |||||| |||||||||||||| |||||||||
Sbjct 302 AACAGGAAACTTTTACAGCAACAACCACAGACGCAACAGACACAAAGCTGTCATCAACAT 361
Query 335 CACCAATGTAATAAACAGTCGCTGAATCAGCAACAAGGGCATTTCGGCACCGTTGAGCGT 394
|||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct 362 CACCAAAGTAATAAACAGTCGTTGAATCAGCAGCAAGGCCATTTCGGCACCGTTGAGCGT 421
Query 395 CTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAAACTTGCACCGCTCCTCTTGCTCGC 454
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 422 CTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAGACATGCACCGCTCCTCTTGCTCGT 481
Query 455 CTCACCATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCGATCTTGAGCAGTCCA 514
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 482 CTTACAATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCAATCTTGAGCAGTCCA 541
Query 515 AACATTTGGCATGAAGCTTCGCGTATTGTCAAGGAGGAAGGTTTTAGAGCATTTTGGAAA 574
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 542 AACATTTGGCATGAAGCTTCGCGTATTGTTAAGGAGGAAGGTTTTAGAGCATTTTGGAAA 601
Query 575 GGAAACTTGGTTACTGTAGCTCATCGGCTTCCCTATGGTGCAGTTAACTTCTATGCATAT 634
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 602 GGAAACTTGGTTACTGTAGCTCATCGGCTTCCTTATGGTGCAGTTAACTTCTATGCATAT 661
Query 635 GAAGAATACAAGACTTTCTTGCACTCGAATCCAGTCTTGCAGAGTTATAAAGGAAATGCA 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GAAGAATACAAGACTTTCTTGCACTCGAATCCAGTCTTGCAGAGTTATAAAGGAAATGCG 721
Query 695 GGTGTGGACATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACAGCTGCTTCA 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGTGTGGACATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACAGCTGCTTCA 781
Query 755 GCTACCTACCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAATTCAATCTAT 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GCTACCTACCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAATTCAATCTAT 841
Query 815 TATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAAGGAATTTTGGGTCTA 874
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 842 TATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAGGGAATTTTGGGTCTA 901
Query 875 TATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGCCTTGCAATCAGCTTCGCA 934
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 902 TATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGTCTTGCAATCAGCTTCGCA 961
Query 935 GCGTATGAGACTTTTAAAACATTTTGGCTCTCTCATAGGCCTAATGATTCAAATGCCGTG 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GCGTATGAGACTTTTAAAACATTTTGGCTCTCTCATAGGCCTAATGATTCAAATGCCGTG 1021
Query 995 GTTAGTCTTGGTTGTGGCAGCCTCTCTGGAATTGTTTCCTCGACAGCGACTTTCCCATTG 1054
|||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct 1022 GTTAGTCTTGGTTGTGGCAGTCTCTCCGGAATTGTTTCCTCTACAGCGACATTCCCATTG 1081
Query 1055 GACCTGGTGAGAAGAAGAATGCAGTTGGAAGGAGCTGGTGGGCGAGCGCGAGTCTATACC 1114
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1082 GACCTGGTGAGAAGAAGAATGCAGTTGGAAGGAGCTGGTGGGCGAGCGAGAGTGTATACC 1141
Query 1115 ACGGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAGGCATGAGAGGGCTATAC 1174
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 ACAGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAGGCATGAGAGGGCTATAC 1201
Query 1175 AGAGGAATCATACCAGAATACTACAAAGTGGTTCCTGGTGTTGGCATTGCCTTCATGACA 1234
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1202 AGAGGAATCATACCAGAATACTACAAAGTGGTTCCTGGTGTTGGCATCGCCTTCATGACA 1261
Query 1235 TTCGAGGAATTGAAGAAGCTCTTATCGTCTGCCCCTAATTAATAACGTCTTATATACTTT 1294
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1262 TTCGAGGAATTGAAGAAGCTCTTATCAACTGTCCCTAATTAATAACGTCTTATATACTTT 1321
Query 1295 AGTGTAAGCTTCTT-CATAGAGTTTGGAGAAGAAAAAATAGAAAATCAtttt-tcctttg 1352
|||||||||| ||| | | | || | | |||| | || ||||||||| |||||||
Sbjct 1322 AGTGTAAGCTACTTTC-T-GC-TT---A-A-GAAACA---GACAATCATTTTGTCCTTTG 1370
Query 1353 gttggtagtagtttttatt---t-t-tcaatct-tcc-agt-gtatagtagt---agttt 1401
||||||||||||||| || | | ||| | | | ||| || ||||||| |||||
Sbjct 1371 TTTGGTAGTAGTTTTT-TTGGGTCTGTCAGTGTATAGTAGTAGTCTAGTAGTTGCAGTTT 1429
Query 1402 tttagGTGTTAAAATTTACAATTTGTTGCTCCTCCATTAGCATCTCTCGAGATAACAATT 1461
|| ||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1430 TT-AGGAGTTAAGATTTACAATTTGTTGCTCCTCCATTAGCATCTTTCAAGATAACAATT 1488
Query 1462 TTGCCTTGTTCAAGAGCTCTT 1482
||||||||| |||||||||||
Sbjct 1489 TTGCCTTGTGCAAGAGCTCTT 1509
> AT2G37890.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr2:15861688-15864009 REVERSE LENGTH=1503
Length=1503
Score = 693 bits (375), Expect = 0.0
Identities = 706/863 (82%), Gaps = 34/863 (4%)
Strand=Plus/Plus
Query 394 TCTTCTCGCCGGTGGAATCGCCGGCG-CATTTAGTAAAACTTGCACCGCTCCTCTTGCTC 452
||| ||||| ||||| || ||||||| || |||| || || || ||||||||||||||||
Sbjct 292 TCTCCTCGCTGGTGGTATTGCCGGCGCCA-TTAGCAAGACATGTACCGCTCCTCTTGCTC 350
Query 453 GCCTCACCATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGC-GATCTTGAGCAGT 511
|||||||||||||||||||| | ||||| ||||| || |||| ||| | | || ||| ||
Sbjct 351 GCCTCACCATCTTGTTTCAGTTGCAAGGGATGCAATCAGAAGGTGCAG-TGTTAAGCCGT 409
Query 512 CCAAACATTT-GGCATGAAGCTTCGCGTATTGTCAAGGAGGAAGGTTTTAGAGCATTTTG 570
|||||| || ||| ||||||||| |||||| |||| |||||||| | |||||| |||||
Sbjct 410 CCAAAC-TTACGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGAGCCTTTTG 468
Query 571 GAAAGGAAACTTGGTTACTGTAGCT-CATC-GGCTTCCCTATGGTGCAGTTAACTTCTAT 628
||||||||| ||||||||||||| | || | || |||| ||| |||||| |||||||||
Sbjct 469 GAAAGGAAATTTGGTTACTGTAG-TACA-CAGGATTCCTTATACTGCAGTAAACTTCTAT 526
Query 629 GCATATGAAGAA-TACAAGACT-TTCTTGCACT-CGAATCCAGTCTTGCAGAGTTATAAA 685
|||||||| ||| ||||| || || || || | | ||||||||| | ||||||| || |
Sbjct 527 GCATATGA-GAAGTACAAT-CTATTTTT-CAATTCAAATCCAGTCGTACAGAGTTTTATA 583
Query 686 GGAAATGCAGGTGTGGACATTTC--T-GTGCACTTTGTAAGTGGTGGCTTGGCTGGACTA 742
|||||| | | |||| || | | | ||||| ||||| |||||||||||||||||| |
Sbjct 584 GGAAATAC-GA-GTGG-CAATCCGATAGTGCATTTTGTTAGTGGTGGCTTGGCTGGAATT 640
Query 743 ACAGCTGCTTCAGCTACCTA-CCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAG 801
||||||||| ||||||| || ||| ||||||||||| ||||| || ||| ||||||||||
Sbjct 641 ACAGCTGCTACAGCTACATATCCC-CTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAG 699
Query 802 AAATTCAATCTATTATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAAGG 861
||| |||| || || |||||| ||| |||| | ||||||||||| ||||||||||| ||
Sbjct 700 GAATGCAATTTACTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGG 759
Query 862 AATTTTGGGTCTATATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGCCTTGC 921
|||||||||||||||||||||||||||||| ||||| |||||||| || ||||| |||||
Sbjct 760 AATTTTGGGTCTATATAAAGGACTTGGTGCTACATTATTGGGTGTTGGACCAAGTCTTGC 819
Query 922 AATCAGCTTCGCAGCGTATGAGACTTTTAAAACATTTTGGC-TCTCTCATAGGCCTAATG 980
|||| ||||| ||||| ||| || | ||| ||||||| | ||||||||||| ||||
Sbjct 820 TATCAATTTCGCCGCGTACGAGTCTATGAAATTGTTTTGGCAT-TCTCATAGGCCAAATG 878
Query 981 ATTCAAATGCCGTGGTTAGTCTTGGTTGTGGCAGCCTCT--CTGGAATTGTTTCCTCGAC 1038
|||| || || ||| ||||| || ||| || ||| ||||| |||||| || ||
Sbjct 879 ATTCGGATTTGGTTGTTTCTCTTGTTTCTGG-AGG-TCTAGCTGGAGCTGTTTCTTCAAC 936
Query 1039 AGCGACTTTCCCATTGGACCTGGTGAGAAGAAGAATGCA-GTTGGAAGGAGCTGGTGGGC 1097
||| || | ||||||||| || ||||||||||||||||| || |||||||||||||||
Sbjct 937 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGT-GGAAGGAGCTGGTGGAA 995
Query 1098 GAGCGCGAGTCTATACCACGGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAG 1157
|||| |||| || | ||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 996 GAGCAAGAGTATACAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAG 1055
Query 1158 GCATGAGAGGGCTATACAGAGGAATCATA-CCAGAATACTACAAAGTGGTTCCTGGTGTT 1216
|| | | |||| ||||||||||||| || || ||||| |||||||| |||||||| |||
Sbjct 1056 GCTTCAAAGGGATATACAGAGGAAT-ATTGCCTGAATATTACAAAGTAGTTCCTGGCGTT 1114
Query 1217 GGCATTGCCTTCATGACATTCGA 1239
||||| | ||||||||||| |||
Sbjct 1115 GGCATCGTCTTCATGACATACGA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5