BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485785 Length=1482 Score E Sequences producing significant alignments: (Bits) Value AT3G53940.1 | Symbols: | Mitochondrial substrate carrier famil... 2145 0.0 AT2G37890.1 | Symbols: | Mitochondrial substrate carrier famil... 693 0.0 > AT3G53940.1 | Symbols: | Mitochondrial substrate carrier family protein | chr3:19971019-19973769 REVERSE LENGTH=1542 Length=1542 Score = 2145 bits (1161), Expect = 0.0 Identities = 1410/1521 (93%), Gaps = 53/1521 (3%) Strand=Plus/Plus Query 1 TTTACCAAAATACCCTTCTGCCTTCGCAGACCAGGTTTTAGGGGTTTCTTTAGGGTTTAC 60 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3 TTTACCAAAACACCCTTCTGCCTTCGCAGACCAGGTTTTAGGGGTTTCTCTAGGGTTTAC 62 Query 61 CTTCTCCACGACGA-TT-T-C--TC---CAATCTCCGATCAC----A---A-AAA----- 99 |||||||||||||| || | | || |||||||||||||| | | ||| Sbjct 63 CTTCTCCACGACGATTTCTCCAATCTGACAATCTCCGATCACAAAAATTCAGAAACCCTT 122 Query 100 T-CGCTTTAATTGATGCGACTTCATCTTCCA-CATCCGCCGAATCAACCACAGAGTAATC 157 | ||||||||||||||||| |||| |||||| | ||||||| |||||||||||||||||| Sbjct 123 TCCGCTTTAATTGATGCGAATTCAGCTTCCATC-TCCGCCGCATCAACCACAGAGTAATC 181 Query 158 TCACAGAGAGAAAGATATTTGAATATGGAAGCTCGAGTCGGTGTAGTGGTAGAAGGAGGA 217 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 182 TCACAGAGAGAAAGAGATTTGAATATGGAAGCTCGAGTCGGTGTAGTGGTGGAAGGAGGA 241 Query 218 CAGAGAGCTCTTAATACAGCCACCGCCACCGCCGTGCATAACAGTGTTGTTGACGCCGGA 277 |||||||||||||||||||||||| |||||||||| ||||||| || || ||||||||| Sbjct 242 CAGAGAGCTCTTAATACAGCCACCACCACCGCCGTTCATAACACCGTCGTAGACGCCGGA 301 Query 278 AACAGGAAGCTGTTACAGCAACAACCGCAGACG---CAGACACAAAGCTGCCATCAACAT 334 |||||||| || |||||||||||||| |||||| |||||||||||||| ||||||||| Sbjct 302 AACAGGAAACTTTTACAGCAACAACCACAGACGCAACAGACACAAAGCTGTCATCAACAT 361 Query 335 CACCAATGTAATAAACAGTCGCTGAATCAGCAACAAGGGCATTTCGGCACCGTTGAGCGT 394 |||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||| Sbjct 362 CACCAAAGTAATAAACAGTCGTTGAATCAGCAGCAAGGCCATTTCGGCACCGTTGAGCGT 421 Query 395 CTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAAACTTGCACCGCTCCTCTTGCTCGC 454 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 422 CTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAGACATGCACCGCTCCTCTTGCTCGT 481 Query 455 CTCACCATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCGATCTTGAGCAGTCCA 514 || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 482 CTTACAATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCAATCTTGAGCAGTCCA 541 Query 515 AACATTTGGCATGAAGCTTCGCGTATTGTCAAGGAGGAAGGTTTTAGAGCATTTTGGAAA 574 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 542 AACATTTGGCATGAAGCTTCGCGTATTGTTAAGGAGGAAGGTTTTAGAGCATTTTGGAAA 601 Query 575 GGAAACTTGGTTACTGTAGCTCATCGGCTTCCCTATGGTGCAGTTAACTTCTATGCATAT 634 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 602 GGAAACTTGGTTACTGTAGCTCATCGGCTTCCTTATGGTGCAGTTAACTTCTATGCATAT 661 Query 635 GAAGAATACAAGACTTTCTTGCACTCGAATCCAGTCTTGCAGAGTTATAAAGGAAATGCA 694 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 GAAGAATACAAGACTTTCTTGCACTCGAATCCAGTCTTGCAGAGTTATAAAGGAAATGCG 721 Query 695 GGTGTGGACATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACAGCTGCTTCA 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 GGTGTGGACATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACAGCTGCTTCA 781 Query 755 GCTACCTACCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAATTCAATCTAT 814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 GCTACCTACCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAATTCAATCTAT 841 Query 815 TATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAAGGAATTTTGGGTCTA 874 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 842 TATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAGGGAATTTTGGGTCTA 901 Query 875 TATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGCCTTGCAATCAGCTTCGCA 934 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 902 TATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGTCTTGCAATCAGCTTCGCA 961 Query 935 GCGTATGAGACTTTTAAAACATTTTGGCTCTCTCATAGGCCTAATGATTCAAATGCCGTG 994 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 962 GCGTATGAGACTTTTAAAACATTTTGGCTCTCTCATAGGCCTAATGATTCAAATGCCGTG 1021 Query 995 GTTAGTCTTGGTTGTGGCAGCCTCTCTGGAATTGTTTCCTCGACAGCGACTTTCCCATTG 1054 |||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||| Sbjct 1022 GTTAGTCTTGGTTGTGGCAGTCTCTCCGGAATTGTTTCCTCTACAGCGACATTCCCATTG 1081 Query 1055 GACCTGGTGAGAAGAAGAATGCAGTTGGAAGGAGCTGGTGGGCGAGCGCGAGTCTATACC 1114 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 1082 GACCTGGTGAGAAGAAGAATGCAGTTGGAAGGAGCTGGTGGGCGAGCGAGAGTGTATACC 1141 Query 1115 ACGGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAGGCATGAGAGGGCTATAC 1174 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1142 ACAGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAGGCATGAGAGGGCTATAC 1201 Query 1175 AGAGGAATCATACCAGAATACTACAAAGTGGTTCCTGGTGTTGGCATTGCCTTCATGACA 1234 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1202 AGAGGAATCATACCAGAATACTACAAAGTGGTTCCTGGTGTTGGCATCGCCTTCATGACA 1261 Query 1235 TTCGAGGAATTGAAGAAGCTCTTATCGTCTGCCCCTAATTAATAACGTCTTATATACTTT 1294 |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1262 TTCGAGGAATTGAAGAAGCTCTTATCAACTGTCCCTAATTAATAACGTCTTATATACTTT 1321 Query 1295 AGTGTAAGCTTCTT-CATAGAGTTTGGAGAAGAAAAAATAGAAAATCAtttt-tcctttg 1352 |||||||||| ||| | | | || | | |||| | || ||||||||| ||||||| Sbjct 1322 AGTGTAAGCTACTTTC-T-GC-TT---A-A-GAAACA---GACAATCATTTTGTCCTTTG 1370 Query 1353 gttggtagtagtttttatt---t-t-tcaatct-tcc-agt-gtatagtagt---agttt 1401 ||||||||||||||| || | | ||| | | | ||| || ||||||| ||||| Sbjct 1371 TTTGGTAGTAGTTTTT-TTGGGTCTGTCAGTGTATAGTAGTAGTCTAGTAGTTGCAGTTT 1429 Query 1402 tttagGTGTTAAAATTTACAATTTGTTGCTCCTCCATTAGCATCTCTCGAGATAACAATT 1461 || ||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1430 TT-AGGAGTTAAGATTTACAATTTGTTGCTCCTCCATTAGCATCTTTCAAGATAACAATT 1488 Query 1462 TTGCCTTGTTCAAGAGCTCTT 1482 ||||||||| ||||||||||| Sbjct 1489 TTGCCTTGTGCAAGAGCTCTT 1509 > AT2G37890.1 | Symbols: | Mitochondrial substrate carrier family protein | chr2:15861688-15864009 REVERSE LENGTH=1503 Length=1503 Score = 693 bits (375), Expect = 0.0 Identities = 706/863 (82%), Gaps = 34/863 (4%) Strand=Plus/Plus Query 394 TCTTCTCGCCGGTGGAATCGCCGGCG-CATTTAGTAAAACTTGCACCGCTCCTCTTGCTC 452 ||| ||||| ||||| || ||||||| || |||| || || || |||||||||||||||| Sbjct 292 TCTCCTCGCTGGTGGTATTGCCGGCGCCA-TTAGCAAGACATGTACCGCTCCTCTTGCTC 350 Query 453 GCCTCACCATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGC-GATCTTGAGCAGT 511 |||||||||||||||||||| | ||||| ||||| || |||| ||| | | || ||| || Sbjct 351 GCCTCACCATCTTGTTTCAGTTGCAAGGGATGCAATCAGAAGGTGCAG-TGTTAAGCCGT 409 Query 512 CCAAACATTT-GGCATGAAGCTTCGCGTATTGTCAAGGAGGAAGGTTTTAGAGCATTTTG 570 |||||| || ||| ||||||||| |||||| |||| |||||||| | |||||| ||||| Sbjct 410 CCAAAC-TTACGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGAGCCTTTTG 468 Query 571 GAAAGGAAACTTGGTTACTGTAGCT-CATC-GGCTTCCCTATGGTGCAGTTAACTTCTAT 628 ||||||||| ||||||||||||| | || | || |||| ||| |||||| ||||||||| Sbjct 469 GAAAGGAAATTTGGTTACTGTAG-TACA-CAGGATTCCTTATACTGCAGTAAACTTCTAT 526 Query 629 GCATATGAAGAA-TACAAGACT-TTCTTGCACT-CGAATCCAGTCTTGCAGAGTTATAAA 685 |||||||| ||| ||||| || || || || | | ||||||||| | ||||||| || | Sbjct 527 GCATATGA-GAAGTACAAT-CTATTTTT-CAATTCAAATCCAGTCGTACAGAGTTTTATA 583 Query 686 GGAAATGCAGGTGTGGACATTTC--T-GTGCACTTTGTAAGTGGTGGCTTGGCTGGACTA 742 |||||| | | |||| || | | | ||||| ||||| |||||||||||||||||| | Sbjct 584 GGAAATAC-GA-GTGG-CAATCCGATAGTGCATTTTGTTAGTGGTGGCTTGGCTGGAATT 640 Query 743 ACAGCTGCTTCAGCTACCTA-CCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAG 801 ||||||||| ||||||| || ||| ||||||||||| ||||| || ||| |||||||||| Sbjct 641 ACAGCTGCTACAGCTACATATCCC-CTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAG 699 Query 802 AAATTCAATCTATTATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAAGG 861 ||| |||| || || |||||| ||| |||| | ||||||||||| ||||||||||| || Sbjct 700 GAATGCAATTTACTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGG 759 Query 862 AATTTTGGGTCTATATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGCCTTGC 921 |||||||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 760 AATTTTGGGTCTATATAAAGGACTTGGTGCTACATTATTGGGTGTTGGACCAAGTCTTGC 819 Query 922 AATCAGCTTCGCAGCGTATGAGACTTTTAAAACATTTTGGC-TCTCTCATAGGCCTAATG 980 |||| ||||| ||||| ||| || | ||| ||||||| | ||||||||||| |||| Sbjct 820 TATCAATTTCGCCGCGTACGAGTCTATGAAATTGTTTTGGCAT-TCTCATAGGCCAAATG 878 Query 981 ATTCAAATGCCGTGGTTAGTCTTGGTTGTGGCAGCCTCT--CTGGAATTGTTTCCTCGAC 1038 |||| || || ||| ||||| || ||| || ||| ||||| |||||| || || Sbjct 879 ATTCGGATTTGGTTGTTTCTCTTGTTTCTGG-AGG-TCTAGCTGGAGCTGTTTCTTCAAC 936 Query 1039 AGCGACTTTCCCATTGGACCTGGTGAGAAGAAGAATGCA-GTTGGAAGGAGCTGGTGGGC 1097 ||| || | ||||||||| || ||||||||||||||||| || ||||||||||||||| Sbjct 937 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGT-GGAAGGAGCTGGTGGAA 995 Query 1098 GAGCGCGAGTCTATACCACGGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAG 1157 |||| |||| || | ||| ||||||||||||||||||||||||||||| ||| |||||| Sbjct 996 GAGCAAGAGTATACAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAG 1055 Query 1158 GCATGAGAGGGCTATACAGAGGAATCATA-CCAGAATACTACAAAGTGGTTCCTGGTGTT 1216 || | | |||| ||||||||||||| || || ||||| |||||||| |||||||| ||| Sbjct 1056 GCTTCAAAGGGATATACAGAGGAAT-ATTGCCTGAATATTACAAAGTAGTTCCTGGCGTT 1114 Query 1217 GGCATTGCCTTCATGACATTCGA 1239 ||||| | ||||||||||| ||| Sbjct 1115 GGCATCGTCTTCATGACATACGA 1137 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73091993520 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5