BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485786
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53950.1 | Symbols: | glyoxal oxidase-related protein | chr... 2671 0.0
> AT3G53950.1 | Symbols: | glyoxal oxidase-related protein | chr3:19975619-19977439
FORWARD LENGTH=1821
Length=1821
Score = 2671 bits (1446), Expect = 0.0
Identities = 1650/1748 (94%), Gaps = 15/1748 (1%)
Strand=Plus/Plus
Query 1 TAGCCAACAAAAAATGGCAGAATTTGTTCCTT-CT--TACAC-TC-----CAGGGATCGT 51
|||||||||||||||||||||| || |||||| | ||||| || ||||||||||
Sbjct 73 TAGCCAACAAAAAATGGCAGAACTTATTCCTTGGTACTACACTTCAGGGTCAGGGATCGT 132
Query 52 ACTTGTACTTCAAACCATTCTTCTCTTCTCGATCGCACGTGCCGATTTACCAGGCACGTG 111
||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| | ||
Sbjct 133 ACTTGTACTTCAAACCATTTTTCTCTTCTCGATCGTACGTGCTGATTTACCAGGCTCATG 192
Query 112 GGAGCTCATTGTACAAGACGCCGGTATAGCTTCTATGCACACGGCGGTGACCCGGTTCAA 171
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GGAACTCATTGTACAAGACGCCGGTATAGCTTCTATGCACACGGCGGTGACCCGGTTCAA 252
Query 172 CACGGTGATTCTTCTAGATCGAACAAACATCGGACCGTCGAGAAAGGCTCTTGATCGTCA 231
|||||| || |||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 253 CACGGTCATCCTTCTAGACCGAACTAACATCGGACCGTCGAGAAAGGCTCTTGACCGTCA 312
Query 232 CCGGTGCCGGAGAGACCCAAAAGACGCAGCTCTGAAGCACGATTGCTACGCTCACTCGGT 291
||||||||||||||||||||||||||| ||| |||| | |||||| ||||||||||||||
Sbjct 313 CCGGTGCCGGAGAGACCCAAAAGACGCCGCTTTGAAACGCGATTGTTACGCTCACTCGGT 372
Query 292 TCTGTTCGACCTTGGTACAAATCAGATCAGACCATTGATGATACAAACTGACACGTGGTG 351
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 373 TCTGTTCGACCTTGGTACAAATCAGATCAGACCACTGATGATACAAACCGACACGTGGTG 432
Query 352 CTCATCGGGTCAGTTTTTATCCGACGGATCGTTGCTTCAAACGGGTGGGGATAAAGACGG 411
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 433 CTCGTCGGGCCAGTTTTTATCCGACGGATCGTTGCTACAAACGGGTGGGGATAAAGACGG 492
Query 412 GTTTAAAAAGATCCGTAAATTCGAACCGTGTGACCCGAACGAGACGTGCGATTGGGTGGA 471
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 493 GTTTAAAAAGATACGTAAATTCGAACCCTGTGACCCGAACGAAACGTGCGATTGGGTGGA 552
Query 472 GCTTCAAGATACCGAATTGATAACCGGTCGCTGGTACGCTACTAACCAGATATTACCGGA 531
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 553 GCTTCAAGATACCGAATTGATAACCGGACGCTGGTACGCTTCTAACCAGATATTACCGGA 612
Query 532 TGGTTCGGTTATCATCGTCGGTGGAAGAGGAACCAATACGGTTGAGTATTACCCTCCACG 591
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 613 TGGTTCGGTTATCATCGTCGGTGGTAGAGGAACTAATACGGTTGAGTATTACCCTCCACG 672
Query 592 CGAAAACGGTGCCGTTTCGTTTCAGTTTCTTGCTGACGTGGAAGACAAACAAATGGATAA 651
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CGAAAACGGTGCCGTTCCGTTTCAGTTTCTTGCTGACGTGGAAGACAAACAAATGGATAA 732
Query 652 TCTCTATCCGTACGTTCATCTCCTCCCCGACGACGACGGCGGCCACCTCTTCGTCTTCGC 711
||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||
Sbjct 733 TCTCTATCCGTACGTTCATCTCCTCCCCGACGACGACGGTGGCAATCTCTTCATCTTCGC 792
Query 712 TAACAGTCGCGCCGTTAAATACGATCACCGGTTAAACACTGTCGTGAGAGAGTATCCACC 771
|||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||
Sbjct 793 CAACAGTCGCGCCGTTAAATACGATCACCGGATAAACGCCGTCGTGAAAGAGTATCCACC 852
Query 772 GTTAGAAGGTGGTCCGAGGAATTATCCGTCAGGTGGATCATCGGCGATGCTAGCGATCCA 831
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 853 GTTAGACGGTGGTCCGAGGAATTATCCGTCAGGTGGATCATCGGCGATGCTAGCTATCCA 912
Query 832 AGGAGATTTCACCACGGCGGAGATACTAATTTGCGGCGGAGCTCAATCCGGGGCCTTCAC 891
||||||||||||||| |||||||| ||||| ||||||||||| |||||||| ||||||||
Sbjct 913 AGGAGATTTCACCACAGCGGAGATTCTAATCTGCGGCGGAGCACAATCCGGAGCCTTCAC 972
Query 892 AGCGCGTGCAATTGACGCTCCGGCGCATGGAACCTGCGGACGAATCGTAGCTACCGCGGC 951
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AGCGCGTGCAATTGATGCTCCGGCGCATGGAACCTGCGGACGAATCGTAGCTACCGCGGC 1032
Query 952 GGATCCCGTTTGGGTGACGGAGGAGATGCCGTTCGGGAGAATCATGGGAGATATGGTGAA 1011
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GGATCCTGTTTGGGTGACGGAGGAGATGCCGTTCGGGAGAATCATGGGAGATATGGTGAA 1092
Query 1012 TTTACCGACGGGAGAGATTCTGATCATAAACGGAGCTCAAGCCGGTAGCCAAGGATTCGA 1071
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1093 TTTACCGACGGGAGAGATTCTGATCATAAACGGAGCTCAAGCCGGAAGCCAAGGATTCGA 1152
Query 1072 AATGGGATCCGATCCGTGTTTATACCCGCTTTTATACCGACCCGATCAACCAATTGGTTT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 AATGGGATCCGATCCGTGTTTATACCCGCTTTTATACCGACCCGATCAACCAATTGGTTT 1212
Query 1132 ACGATTCATGACATTGAATCCAGGAACTGTACCGAGAATGTACCATTCAACGGCGAATCT 1191
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1213 ACGATTCATGACGTTGAACCCAGGAACTGTACCGAGAATGTACCATTCCACGGCGAATCT 1272
Query 1192 TTTACCGGACGGTAGAATTTTTCTCGCCGGAAGTAATCCTCACTATTTCTACAAATTCAA 1251
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1273 TTTACCGGACGGTAGAATTCTTCTCGCCGGAAGCAATCCTCACTATTTCTACAAATTCAA 1332
Query 1252 CGCCGAATTCCCAACAGAGCTACGGATTGAAGCGTTTTCACCGGAGTATCTTTCGCCGGA 1311
||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1333 CGCCGAATTCCCAACGGAGCTACGGATCGAAGCGTTTTCACCGGAGTATCTGTCACCGGA 1392
Query 1312 TCGAGCTAATCTCCGGCCTGAGATCCGAGAAATCCCGCAGATCGTACGGTACGGAGAGGT 1371
||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1393 TCGAGCTAATCTCCGACCAGAGATCCAAGAAATCCCGCAGATCATACGGTACGGAGAGGT 1452
Query 1372 CTTCGACGTGTTCGTGACGGTGCCGTTGCCGGTGGTGGAGATTATACAGATAAATTGGGG 1431
||||||||||||||||| ||||||||||||||||||| ||| || ||||| ||||||||
Sbjct 1453 TTTCGACGTGTTCGTGACCGTGCCGTTGCCGGTGGTGGGGATAATTCAGATGAATTGGGG 1512
Query 1432 AAGTGCGCCTTTTGCGACTCATTCGTTTTCTCAAGGTCAACGGCTCGTTAAGTTGACCGT 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 AAGTGCGCCTTTTGCGACTCATTCGTTTTCTCAAGGTCAACGGCTCGTTAAGTTGACCGT 1572
Query 1492 TGCTCCGTCTGTGCCTGACGGGGTTGGTCGTTATAGGATTCAGTGTACGGCTCCACCTAA 1551
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1573 TGCTCCGTCTGTGCCTGACGGAGTAGGTCGTTATAGGATTCAGTGTACGGCTCCACCTAA 1632
Query 1552 CGGCGCCGTTTCTCCGCCTGGGTATTATATGGCCTTCGCCGTTAACCAGGGAGTTCCTAG 1611
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1633 CGGCGCCGTTTCTCCGCCTGGGTATTATATGGCCTTCGCTGTTAACCAGGGAGTTCCTAG 1692
Query 1612 CATTGCTCGCTGGATTCGTATAGTTTCTTGATTAAAATTAAACCAG-G-AGATATTTAAT 1669
||||||||| ||||| || |||||||||||||| ||| | |||| | ||||||||||
Sbjct 1693 CATTGCTCGATGGATACGAATAGTTTCTTGATTTAAA--A--CCAGAGGAGATATTTAAA 1748
Query 1670 TTTTTAATTTGTTAAATAGTTAAACACATGATGTAATATAAATATTTTCATGGAAAAACC 1729
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1749 ATGTTAATTTGTTAAATAGTTAAACACATCATGTAATATAAATATTTTCATGGAAAAACT 1808
Query 1730 CACTCCGC 1737
|||||||
Sbjct 1809 TACTCCGC 1816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85893132495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5