BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485789
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53970.1 | Symbols: | proteasome inhibitor-related | chr3:1... 1801 0.0
> AT3G53970.1 | Symbols: | proteasome inhibitor-related | chr3:19985139-19987339
FORWARD LENGTH=1185
Length=1185
Score = 1801 bits (975), Expect = 0.0
Identities = 1113/1181 (94%), Gaps = 3/1181 (0%)
Strand=Plus/Plus
Query 1 CTTTTAGTTTTCTTCTTTCCCAAGATCAAAATTTGTTGAAGAAGGAACACTCTCGAGACG 60
||| |||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||
Sbjct 4 CTTATAGTTTTCTTCTTTTCCAAGACCAAAATTTGTTGGAGAACGAACACTCTCGAGACG 63
Query 61 GAATCGATGGCGAATTCTCAGACGGTGATGGCTATGATCAGGTTGGCTAGACCGCCTTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 64 GAATCGATGGCGAATTCTCAGACGGTGATGGCTATGATCAGGTTGGCTAGACCTCCTTTC 123
Query 121 CGCAACAACCACGACAAGGTTGCTTTCGCTATTCACTCTTCTTTCATCTCTTCCGGTTAC 180
|||||||| ||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 124 CGCAACAATCACGATAAGGTTGCTTTCGCTATTCACTCTTCTTTCGTCGCTTCCGGTTAT 183
Query 181 ATCCTCACTGCCACCGGACGGCCTGCTTTCGCCGACGACGCTCTCTCTTCGTCTTCTCAG 240
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 184 ATCCTCACCGCCACCGGACGGCCTGCTTTCGCCGACGAGGCTCTCTCTTCGTCTTCTCAG 243
Query 241 AATGATGTTGGGATCGAAGGATGGAACGAATTCGACGGAGAGTATGCGTTTGTCTATGCG 300
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 244 AATGATGTTGGAATCGAAGGATGGAACGAATTCGAGGGAGAGTATGCGTTTGTCTATGCG 303
Query 301 AATCCGAAGAAAGGATCAAAGAAAATTCTGGTTAAGTGTTTGGCGATGGATGATAAACTT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AATCCGAAGAAAGGGTCAAAGAAAATTCTGGTTAAGTGTTTGGCGATGGATGATAAACTT 363
Query 361 CTTGTTGATGCCATTGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAAGTTGAT 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTTGTTGATGCCATAGCTGATGGTGGAGCAGAACCTGCTCATCTTGAGATTAAAGTTGGG 423
Query 421 AAGTATGCTGAGGAGAGCATTGAGGGGGATTACTCTGCGCAGTTCAAGAATTTGGATAAG 480
| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GATTATGCTGAGGAAAGCAATGAGGGGGATTACTCTGCGCAGTTCAAGAATTTGGATAAG 483
Query 481 TTAGTGACTGATTTGCAGAGTCAGATTCTCGATAAGCTTGATGGAAAACCAAAACCTGTT 540
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 484 TTAGTGACTGATTTGCAGAGTGAGATTATCGATAAGCTTGATGGAAAACCAAAACCTGTT 543
Query 541 GCTTCGAGAGCCCAGTCTAGCTCTGAGAGAAATGAAGAACCTAGATATTATGATGATACT 600
||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||||||
Sbjct 544 GCTTCGAGAGCACAGTCCAGCTCTGAGACTAATGAAGAGCCTAGATATTACGATGATACG 603
Query 601 CCTATTTCATTAGGCCCTCGGATTCATCCCTCAGGGGTGGTAGTTCCTCCGATACCTGGT 660
|||| | |||||||||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 604 CCTAATCCATTAGGCCCTCAGATTCACCCCTCAGGCGTGGTAGTTCCTCCGATACCTGGT 663
Query 661 AATGGAGGTTACAGTGATCTCTTCCCTGGCCCAGGTGCTGGAATGTACCCTGGCAGGGGT 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AATGGTGGTTACAGTGATCTCTTCCCTGGCCCAGGTGCTGGAATGTACCCTGGCAGGGGT 723
Query 721 GGTTTTGGGGATGGAAGCATGCTTGTAGGACCTACTGATCCTCGCTTTTTCCCGTTTGGT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 724 GGTTTTGGGGATGGAAGCATGCTTGTAGGACCTACTGATCCTCGCTTTTTCCCATTTGGT 783
Query 781 GATGGTTCTGATCGACCTGGCTTCATGGGACCACCACAACCGGGTATGCCACCTCCTGGT 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 784 GATGGTTCTGATCGACCTGGCTTCATGGGACCACCACACCCGGGTATGCCACCTCCTGGT 843
Query 841 GCTCGTTTTGATCCTTATGGTCCACCTGGTGTTCCAGGTTTTGAACCAGGCCGGTTCACA 900
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 844 GCGCGTTTTGATCCTTATGGTCCACCCGGTGTTCCAGGTTTTGAGCCAGGCCGGTTCACA 903
Query 901 AGGCAACCTCCAAGAGGGCCAGGAGGCGGGCACCCAGATCTCGAGCATTTTCCCGGCGGT 960
|| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 904 AGACAACCTCCAAGAGGGCCAGGAGGTGGGCATCCAGACCTCGAGCATTTTCCCGGCGGT 963
Query 961 TCAGATTTTATTTAGTAATGTAAAGCAATCGCCAAGGAAATAGAGAAAGCATGAGCACAA 1020
||||||||||| |||||| ||||||| |||||||||||||||||||||| || ||||||
Sbjct 964 TCAGATTTTATATAGTAAAGTAAAGCCATCGCCAAGGAAATAGAGAAAGTGTGTGCACAA 1023
Query 1021 CTTAAAGTCTGGTAGTAACTACTTACAGACAGTAGGATCTAAGTGGttttttttttgtca 1080
|||||||| ||||||||||||| || ||||| ||||||||| ||||||| |||||| |||
Sbjct 1024 CTTAAAGTATGGTAGTAACTACATATAGACAATAGGATCTATGTGGTTTGTTTTTTCTCA 1083
Query 1081 gctgtttttgtgtttggtggtggtgttggttttATTCCCCAGCTGA-TTGTTTATAACTT 1139
||||||||| |||||||||||| |||||||||||||||||||| | || ||||||||||
Sbjct 1084 GCTGTTTTTTTGTTTGGTGGTGTTGTTGGTTTTATTCCCCAGCACACTT-TTTATAACTT 1142
Query 1140 CCAATAAATATATAAATAAAGACTTGGTTTATTTCGCTTTT 1180
| |||||||||||||||||||||||||||||||||||||||
Sbjct 1143 C-AATAAATATATAAATAAAGACTTGGTTTATTTCGCTTTT 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5