BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485791

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53980.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   625    1e-178


> AT3G53980.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr3:19987579-19988269 
REVERSE LENGTH=592
Length=592

 Score =  625 bits (338),  Expect = 1e-178
 Identities = 450/501 (90%), Gaps = 19/501 (4%)
 Strand=Plus/Plus

Query  1    AATCTTGGTTAC-TTTCAAATCCCTCCAAGAAACTAAATGGCATCTTCCATTAAATTTCT  59
            |||||||||| | ||| ||||| ||||||||||| |||||||| ||||||| ||||||||
Sbjct  31   AATCTTGGTT-CATTTAAAATCTCTCCAAGAAACAAAATGGCAGCTTCCATGAAATTTCT  89

Query  60   CTGCATACTTGGCCTGATTCTCCTCGTCAGAACCGTCGTCCACGGTGCAGGAGAGTGCGG  119
            |||||| ||||| |||||||||||| || |||| |||||  |||||||||| ||||| ||
Sbjct  90   CTGCATTCTTGGTCTGATTCTCCTCATCGGAACAGTCGTTGACGGTGCAGGGGAGTGTGG  149

Query  120  TAGATCTTCGCCGGACAATGAAGCAATGAAGCTGGCTCCATGTGCAGGTGCAGCTCAGGA  179
            |||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct  150  TAGATCTTCGCCAGACAATGAGGCGATGAAGCTGGCTCCATGTGCTGGTGCAGCTCAGGA  209

Query  180  CGCAAACACCGCCGTGCCAGGAGGTTGTTGTACTCAGATTAAGAGATTTTCTCAAAACCC  239
            ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  210  CGCTAACTCCGCCGTGCCAGGAGGTTGCTGTACTCAGATTAAGAGATTTTCTCAAAACCC  269

Query  240  TAAATGTCTCTGCGCCATTCTTCTTTCCGACACGGCCAAAGCCTCCGGTGTTGATCCTGA  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  270  TAAATGTCTCTGCGCCATTCTTCTTTCCGACACGGCCAAAGCCTCCGGTGTCGATCCTGA  329

Query  300  GGTTGCCCTTACCATCCC-AAAGCGCTGCAATTTCGCTAACCG-CCCAGTTGGTTACAAG  357
            |||||||||||||||||| ||| || ||||||||||||||||| ||| || |||||||||
Sbjct  330  GGTTGCCCTTACCATCCCTAAA-CGGTGCAATTTCGCTAACCGTCCC-GTCGGTTACAAG  387

Query  358  TGTGGACCATACACACTTCC-------GT--A-GAT-A-A-GGATGAAGGAGATAACACT  404
            |||||| |||||||||||||       ||  | ||| | | ||||||||||||||||| |
Sbjct  388  TGTGGAGCATACACACTTCCATAAAATGTTGACGATTAGAAGGATGAAGGAGATAACATT  447

Query  405  GAGCTTTATGTGGAAGCTTTGAGTTAACTACTATGTCTCCATGTACCGtataatatatga  464
            | || |||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||
Sbjct  448  GGGCCTTATGTGGAAGCTTGGAGTTTACTACTACGTCTCCATGTACCTTATAATATATGA  507

Query  465  ataacgataatgtttatatgt  485
            |||||||||||||||||||||
Sbjct  508  ATAACGATAATGTTTATATGT  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24765434471


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5