BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485794
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54000.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharact... 1818 0.0
> AT3G54000.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharacterised
conserved protein UCP022260 (InterPro:IPR016802); Has
94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19996607-19998623
FORWARD LENGTH=1635
Length=1635
Score = 1818 bits (984), Expect = 0.0
Identities = 1318/1467 (90%), Gaps = 72/1467 (5%)
Strand=Plus/Plus
Query 1 TCGTCTTCTAGT-GTTTTTTATTTTCTGTTA-TTTTCGCCTGAGACTGGGTCCCTGAGAA 58
|||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct 1 TCGTCTTCTAGTATTTTTTTGTTTTCTGTTATTTTTCGCCTGAGACTGGGTCCCTGAG-A 59
Query 59 TTTCACAAAACTCATTATTGAAACTTAACAAAACAGCAACCTCCGTTATTAAAGTTCCCT 118
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTTCACAAAACTCGTTATTGAAACTTAACAAAACAGCAACCTCCGTTATTAAAGTTCCCT 119
Query 119 CCTCCTCGATTTCCGTGGAAAATCACACTTTTAACCATGGAA---CCTAGTAGCGTAATC 175
| |||||||||||| |||||| ||| |||| |||||||| |||||||||||| ||
Sbjct 120 --T-CTCGATTTCCGT-GAAAATTTCAC-TTTAGCCATGGAACCTCCTAGTAGCGTAGTC 174
Query 176 GACGATGCTGAGTTTTGGCTTCCGCCGGAGTTTCTCACTGACGATGATTTTCTCGTTGAG 235
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 175 GACGATGCTGAGTTTTGGCTTCCGACGGAGTTTCTCACTGACGATGATTTTCTCGTTGAG 234
Query 236 AAGGAGAATAACGGTGTTGGAATCGATGACTCTTTGTTCCCGTACGAGCCTCGTC----A 291
|||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 235 AAGGAGAATAACAGTGTAGGAATCGATGACTCCTTGTTCCCGTACGAGCCTCGTCATGGA 294
Query 292 --T-GGA--TTTGGCTCTACCGTTAAGCCTAACACGGTGAAGAAAGACGACGAGGAGAGT 346
| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 295 TTTGGGACTTTTGGCTCTACCGTTAAGCCTAACACGGTGAAGGAAGATGACGAGGAGAGT 354
Query 347 TTCTTAGCCGGATTGACTCAGCAGATGGTTAAGTCTTCTCT-AGAAGATGATTTCTCCGG 405
||||||||||||||||||| ||||||||||| ||| ||||| | ||||||||||||||||
Sbjct 355 TTCTTAGCCGGATTGACTCGGCAGATGGTTATGTCATCTCTCA-AAGATGATTTCTCCGG 413
Query 406 TGGATTTTGCGGTAATCACGCTTTTCCGGCCGCTAACGACAACAAGGCGTGGGGAATGAA 465
|||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||
Sbjct 414 TGGAGTTTGCGGTAATCACGCTTTTCCGGCCGGTAATGACCACAAGGCGTGGGAAATGAA 473
Query 466 TCGTCCGTCTCTGTGTGTCGCCGGAACTGGCTGTTGTTGCCGGAATCAGCGATTGAACCA 525
|||| || ||| |||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 474 TCGTTCGCCTCCGTGTGTCGCCGGAACTGGCTGTTGTTGCTTGAATCAGCGGTTTAACCA 533
Query 526 GAA-CTCCAATTCGCGAGTTTCTTCATGGGATCTGTACTGTGCCGCAGAGAGGATGAGTA 584
||| || ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 534 GAACCT-TAATTCGCGAGTTTCTTCATGGGATCTGTACTGTGCTGCGGAGAGGATGAGTA 592
Query 585 TCAACGACGAACCGTACCATACTGGTAGAGGACTTCTCGG-TCCTCCCACAAAACATTCC 643
||||||||||||| ||||||| ||| |||||||||||||| | ||||| |||||| |
Sbjct 593 TCAACGACGAACCATACCATAGTGGCAGAGGACTTCTCGGAT-CTCCCGCAAAAC--T-- 647
Query 644 TCCGTCGCCGCCGCCGTCAAAAACCACTCCAACAACGGCACCGGTTACTACAACAACCAT 703
| | |||| |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 648 T---T--CCGCTACCGTCAAAAACCACTCTAACAACGGCACCGGTTACTACAACAATCAT 702
Query 704 CAATCTCTCCAATACCAGAAGCTACAAGCTATCCAGTTTCAGCAGCTAAAGCAGCAACAG 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CAATCTCTCCAATACCAGAAGCTACAAGCTATCCAGTTTCAGCAGCTAAAGCAGCAACAG 762
Query 764 TTAATGAAACATCATCGCCAATTGGTGCATCAGAGCAGAGGAGTAATAGTTAATGGCAAC 823
||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 763 TTAATGAAACATCGTCGCCAATTGGTGCGTCAGAACAGAGGAGTAAGAGTTAATGGCAAC 822
Query 824 AAAAATGTTGGTCCAGTGAATTTGTCGTCTTCTGCATGGTCTAATCAGCTTCCGAGGCGT 883
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 823 AAAAATGTTGGTCCAGTGGATTTGTCGTCTTCTGCATGGTCTAATCAGTTTCCGAGGCGT 882
Query 884 GAAGTTATGAGAGCTGTATTCATCGGAGACCATACCGGAAAACGTGGCTCAACAGGAACC 943
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 883 GATGTTATGAGAGCTGTATTCATCGGGGACCATACCGGAAAACGTGGCTCAACCGGAACC 942
Query 944 GGCGTCTTCTTACCTCGAAGCGTTAACCATACTTCAAGAACTGAGACTCGCGAGAAACCC 1003
|| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 943 GGTGTCTTCTTACCTCGAAGTGTTAACCATACTTCAAGAACTGAGACTCGAGAGAAGCCT 1002
Query 1004 ACTATATCGACAGTTTTGGTTCCGGCTAGATTGGCTCAAGTCCTGAATCTGAACTTAGGC 1063
||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 1003 ACTATATCGACGGTTTTGGTTCCGGCTAGACTGGCTCAGGTCCTGAATCTGAATTTAGGC 1062
Query 1064 GAACCGGTCCGGTCTTCGACAAATCTCAACGATGTGTCGTGGAGACAGAGGAGCAACAAT 1123
||||||||||||||| || | | |||||||||||||||||||||||||||||||||||||
Sbjct 1063 GAACCGGTCCGGTCTACGGCTACTCTCAACGATGTGTCGTGGAGACAGAGGAGCAACAAT 1122
Query 1124 GGTGGGTTCTCGAGCCAGATGCACGGTGGCGCAAGGGCGGAGCAGTCAGTGCAAGAGCCT 1183
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1123 GGTGGGTTCTCGAGCCAGATGGTCGGTGGCGTGAGGGCGGAGCAGTCAGTGCAAGAGCCT 1182
Query 1184 CGGTTACCTTCGGAGTGGGCTTATTGACTGATTTTGGTGTTCGTAAACTTT-GGATGTGT 1242
|||||||| |||||||||||||||||||||||||| ||||||||| |||| || |||||
Sbjct 1183 CGGTTACCATCGGAGTGGGCTTATTGACTGATTTTA-TGTTCGTAA-CTTTTGGGTGTGT 1240
Query 1243 TTAGGGTGAAGATTTTAT--TGA-T--GAT---A-G---G-T-AG--T-GA--A-A--TA 1280
|||||| ||||||||||| || | | | | | | | || | || | | ||
Sbjct 1241 TTAGGGGGAAGATTTTATGATGGGTTTGGTTTGAAGAAAGATTAGAGTTGATGACAGGTA 1300
Query 1281 GTGGaa-a----aaaa--G-TTAGGGTTTATATAGA--TAGTGGAAGATTTGGAAGAAGA 1330
||| || | |||| | |||||||| || |||| ||||||||||||||||||||||
Sbjct 1301 GTGAAATAGTGGAAAAAAGGTTAGGGTTAATGTAGAGATAGTGGAAGATTTGGAAGAAGA 1360
Query 1331 ATAAAGAAAGTTGCAAGTGTGGAGAGGACGAGGTTTTGGATCGTTTAACCACCCATTGAT 1390
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1361 ATAAAGAAAGTTGGAAGTGTGGAGAGGACGAGGTTTTGGATCGTTTAACCACC-ATTGAT 1419
Query 1391 GGCT-GATAGATGAAGCAAAGAGtttt 1416
|||| ||||||||||| |||||| |||
Sbjct 1420 GGCTTGATAGATGAAGAAAAGAGCTTT 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5