BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485799
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54030.1 | Symbols: | Protein kinase protein with tetratric... 2673 0.0
AT4G11845.1 | Symbols: | Interleukin-1 receptor-associated kin... 259 6e-68
> AT3G54030.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr3:20010927-20013693 FORWARD LENGTH=1911
Length=1911
Score = 2673 bits (1447), Expect = 0.0
Identities = 1700/1813 (94%), Gaps = 54/1813 (3%)
Strand=Plus/Plus
Query 41 AGAAGAAGAAGAAGAAAGCTTGAGACTTTCTCTCTGTATGC-ATTTCGAAATCGATAAAG 99
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 76 AGAAGAAGAAGAAGAAAGCTTGAGACTTTCTCTCTGTGTGCAATTTCGAAATCGATAAAG 135
Query 100 ACTTCAACTTTCGGTTCTAACAATGACAATTT---T-T-GTAT-AGTTTG---A----TT 146
|||||||||||||||||||||||||||||||| | | || | | |||| | ||
Sbjct 136 ACTTCAACTTTCGGTTCTAACAATGACAATTTCCGTATAGTTTGATTTTGTCCACCTCTT 195
Query 147 T--CCGATCACCTGATTTCATCGCCGACGTTAGTCATCAAATGGGAGCTCGTTGCTCTAA 204
| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 196 TCACCGATTACCTGATTTCATCGCTGGCGTTAGTCATCAAATGGGAGCTCGTTGCTCAAA 255
Query 205 GTTCTCATTCTGCTTGTTCCCTTCTCACTTCAAATCCGCTTCAGTTCTCGAATCTCCCGA 264
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 256 GTTCTCATTCTGCTTGTTCCCTTCTCACTTCAAATCCGCTTCAGTTCTCGAGTCTCCTGA 315
Query 265 TCTCGGTCTGAATGGAGGAAAAGTGTGGCCGAGTTTTAAGGAATTCAGACTAGAGCAGCT 324
| || | ||||||||||||||||||||||| |||||||||||||| | | ||||||||
Sbjct 316 TATC-G--AGAATGGAGGAAAAGTGTGGCCGACTTTTAAGGAATTCAAATTGGAGCAGCT 372
Query 325 GAAATCTGCGACCGGAGGTTTCTCTTCAGACAACATTGTATCAGAACACGGCGAGAAAGC 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GAAATCTGCGACCGGAGGTTTCTCTTCAGACAACATTGTATCAGAACACGGCGAGAAAGC 432
Query 385 TCCTAACGTTGTCTACAGAGGAAGACTCGATGATGGTCGCTTGATCGCTGTTAAACGATT 444
||| |||||||||||||||||||| || ||||||||||| ||||| ||||| ||||||||
Sbjct 433 TCCAAACGTTGTCTACAGAGGAAGGCTTGATGATGGTCGTTTGATTGCTGTCAAACGATT 492
Query 445 CAATCGCCTGGCTTGGGCTGATCATCGACAGTTCCTGGATGAAGCGAAAGCTGTTGGGAG 504
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 493 CAATCGCCTTGCTTGGGCTGATCATCGACAGTTCCTGGATGAAGCTAAAGCTGTTGGGAG 552
Query 505 CTTGAGGAGTGATAGATTAGCGAATCTGATAGGATGTTGCTACGAAGGAGAAGAGAGATT 564
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 553 CTTGAGGAGTGATAGATTAGCGAATCTGATTGGATGTTGCTTTGAAGGAGAAGAGAGATT 612
Query 565 ACTCGTTGCTGAGTTTATGCCTCACGAAACGCTTGCAAAGCATCTTTTCCACTGGGAAAA 624
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 613 ACTAGTTGCTGAGTTTATGCCTCATGAAACGCTTGCAAAGCATCTTTTCCACTGGGAGAA 672
Query 625 TCATCCGATGAAATGGGCCATGAGGTTAAGAGTTGCATTGTGTTTAGCGCAAGCATTGGA 684
| |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 673 TAATCCGATGAAATGGGCGATGAGATTAAGAGTTGCATTGTGTTTAGCACAAGCATTGGA 732
Query 685 ATATTGTAGTAATAAAGGGAGAGCTTTGTATCATGATCTCAATGCTTACAGGGTTTTGTT 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 ATATTGTAGTAATAAAGGGAGAGCTTTGTATCATGATCTCAATGCTTACAGGGTTTTGTT 792
Query 745 TGACAAGGATGGGAATCCCAGGTTGTCTTGCTTTGGACTCATGAAAAATAGCAGAGATGG 804
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 793 TGACAAGGATGGGAATCCCAGGTTGTCTTGTTTTGGACTCATGAAAAATAGCAGAGATGG 852
Query 805 GAAGAGTTATAGCACAAACTTGGCATTTACTCCTCCAGAGTATTTGCGAACGGGTAGAGT 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GAAGAGTTATAGCACAAACTTGGCATTTACTCCTCCAGAGTATTTGCGAACGGGTAGAGT 912
Query 865 TACACCAGAGAGTGTAGTATTCAGTTTTGGAACCGTTTTGCTCGATCTCATGAGTGGAAA 924
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TACACCAGAGAGTGTTGTATTCAGTTTTGGAACCGTTTTGCTCGATCTCATGAGTGGAAA 972
Query 925 ACATATTCCACCGAGCCATGCGCTTGACCTAATCAGAGGCAAGAACTGTGCAATGTTAAT 984
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 ACATATTCCACCGAGTCATGCGCTTGACCTAATCAGAGGCAAGAACTGTGCAATGTTAAT 1032
Query 985 GGATTCTGCTCTTGAGGGTCATTTCTCAAACGAAGACGGAACTGAGCTAGTACGCTTAGC 1044
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GGATTCTGCTCTCGAGGGTCATTTCTCAAACGAAGACGGAACTGAGCTAGTACGCTTAGC 1092
Query 1045 CACACGTTGTCTGCAGTATGAAGCTCGAGAAAGACCAAATGTGAAATCTCTCGTCACTTC 1104
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1093 CACACGTTGTCTGCAGTATGAAGCTCGAGAAAGACCAAATGTGAAATCTCTCGTGACTTC 1152
Query 1105 ACTTGTCACACTCCAGAAGGAATCTGATGTAGCTTCATATGTTCTTATGGGTATCCCCCA 1164
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1153 ACTTGTCACACTCCAGAAGGAATCTGATGTAGCTTCCTACGTTCTTATGGGTATACCCCA 1212
Query 1165 TGAAACCGAGGCTGAGGAAGAGTCTCCGCTTTCTTTGACACCCTTTGGTGATGCATGCTT 1224
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TGAAACCGAGGCTGAAGAAGAGTCTCCGCTTTCTTTGACACCCTTTGGTGATGCATGCTT 1272
Query 1225 AAGAGTGGATCTTACAGCCATACAGGAAATACTTAGTAAGATTGGATACAAGGATGATGA 1284
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1273 AAGAGTGGATCTTACAGCCATACAGGAAATACTCAGTAAGATTGGATACAAGGATGATGA 1332
Query 1285 AGGAATTGCCAATGAGCTCTCGTTTCAAATGTGGACCAACCAGATGCAGGAATCTCTCAA 1344
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1333 AGGAATTGCCAATGAGCTCTCGTTTCAAATGTGGACCAATCAGATGCAGGAATCTCTCAA 1392
Query 1345 TTCGAAGAAGCAAGGAGACTTAGCTTTCCGTTCCAAAGATTTTACAACCGCAGTCGATTG 1404
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1393 TTCGAAGAAGCAAGGCGACTTAGCTTTCCGTTCCAAAGATTTTACAACCGCGGTCGATTG 1452
Query 1405 CTACACTCAGTTCATAGATGGGGGAACAATGGTGTCACCAACAGTACACGCACGGCGGTG 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 CTACACTCAGTTCATAGATGGGGGAACAATGGTGTCACCAACAGTACACGCACGGCGGTG 1512
Query 1465 CCTGTCATATCTGATGAACGAGAACGCACAAGAGGCTCTGACAGATGCATTGCAGGCACA 1524
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1513 CTTGTCATATCTGATGAACGACAACGCACAAGAGGCTCTGACAGATGCATTGCAGGCACA 1572
Query 1525 GGTTGTGTCTCCGGAATGGCCAACCGCTTTGTATCTGCAAGCGGCTTGCTTATTCAAGCT 1584
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1573 GGTTGTGTCTCCGGATTGGCCAACCGCCTTGTATCTGCAAGCGGCTTGCTTGTTCAAGCT 1632
Query 1585 CGGTATGGAAGGCGATGCTCAGCAAGCTCTCAAGGATGGGACTACATTGGAAGCTAAGAA 1644
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1633 GGGTATGGAAGCCGATGCTCAGCAAGCTCTTAAGGATGGGACTACATTGGAAGCTAAGAA 1692
Query 1645 GAGTAACAAGCGCTGATAAA-TAGCGTTTTCAAAAGCTTT-GTATATGCTT--------- 1693
|||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1693 GAGTAACAAGCGCTGATAAAATAGCGTTTTCAAAAGCTTTTGTATATGCTTTATTTTGTT 1752
Query 1694 -C-T--CTCT--ATCTCCATCTATATGCACATACATACACATATATGTGGGTGTATTTAT 1747
| | |||| || ||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 1753 TCCTTTCTCTCTATTTCCATCTATATGCGCATACATACACATAT--GCGGGTGTATTTAT 1810
Query 1748 -ATA------C-T-T--TT--GATGCCTTGTTTGT---ATTTATTTATTAGTGTGCCTCA 1791
||| | | | || |||||||||||||| |||||||| ||||| |||||||
Sbjct 1811 TATATATGTGCATATACTTTTGATGCCTTGTTTGTTGTATTTATTTTTTAGTATGCCTCA 1870
Query 1792 TGGGAAGATCTCT 1804
|||||||||||||
Sbjct 1871 TGGGAAGATCTCT 1883
Score = 86.1 bits (46), Expect = 1e-15
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1 AAAAACAATCCTCTTTGTAGAGGGAAGTCTGAAAACGCCGAGAAGAAGA 49
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 21 AAAAACAATTCTCTTTGTAGAGGGAAGTCTGAAAACGCCGAGAAGAAGA 69
> AT4G11845.1 | Symbols: | Interleukin-1 receptor-associated kinase
4 protein | chr4:7126666-7128103 REVERSE LENGTH=721
Length=721
Score = 259 bits (140), Expect = 6e-68
Identities = 182/200 (91%), Gaps = 11/200 (6%)
Strand=Plus/Plus
Query 751 GGATGGGAATCCCAGGTTGTCTTGCTTTGGACTCATGAAAAATAGCAGAGATGGGAAGAG 810
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 145 GGATGGGAATCCCAGGTTGTCTTGCTTTGGACTCATGAAAAGTAGCAGAGATGGGAAGAG 204
Query 811 TTATA--GCACAAACTTGGCATTTACTCCTCCAGAGTA-TTTGCGAACGGGTAGAGTTAC 867
||||| |||| |||||||||||||||||| ||||| | ||||| ||||| || ||||
Sbjct 205 TTATATAGCACTAACTTGGCATTTACTCCTACAGAGAAATTTGCTAACGG--AG--TTAC 260
Query 868 ACCAGAGAGTGTAGTAT-T---CAGTTTTGGAACCGTTTTGCTCGATCTCATGAGTGGAA 923
||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 261 ACCAGAGAGTGTATTATGTTTTCAGTTTTGGAACCGTTTTGCTCGATCTCATTAGTGGAA 320
Query 924 AACATATTCCACCGAGCCAT 943
||||||||||||||||||||
Sbjct 321 AACATATTCCACCGAGCCAT 340
Score = 241 bits (130), Expect = 2e-62
Identities = 176/196 (90%), Gaps = 12/196 (6%)
Strand=Plus/Plus
Query 1220 TGCTTAAGAGTGGATCTTACAGCCATACAGGAAATACTTAGTAAGATTGGATACAAGGAT 1279
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGCTTAAGAATGGATCTTACAGCCATACAGGAAATACTTAGTAAGATTGGATACAAGGA- 414
Query 1280 GATGAAGGAATTGCCAATGAGCTCTCGTTTCAAATGTGGACCAACC-AGATGCAGGAATC 1338
|| | |||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct 415 -AT-------T-GCCATTGAGCTCTCGTTTCAAATGTGGAC-AACCCAGATGCAGGAATC 464
Query 1339 TCTCAATTCGAAGAAGCAAGGAGACTTAGCTTTCCGTTCCAAAGATTTTACAACCGCAGT 1398
|||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 465 TCTCTTTTCAAAGAAGCAAGGGGACTTAGCTTTCCGATCCAAAGATTTTACAACCGCAAT 524
Query 1399 CGATTGCTACACTCAG 1414
||||||||||||||||
Sbjct 525 CGATTGCTACACTCAG 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89256569010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5