BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485800
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54040.1 | Symbols: | PAR1 protein | chr3:20013761-20015437... 1086 0.0
> AT3G54040.1 | Symbols: | PAR1 protein | chr3:20013761-20015437
REVERSE LENGTH=961
Length=961
Score = 1086 bits (588), Expect = 0.0
Identities = 803/900 (89%), Gaps = 42/900 (5%)
Strand=Plus/Plus
Query 1 AACATATACGCGTCCTATTTCCACGTTCTCTCTATATAAC-TCTTCTCCTAGAAAACA-- 57
||||||||||||||||||||||||||||||||||||| || | || |||| |||||||
Sbjct 1 AACATATACGCGTCCTATTTCCACGTTCTCTCTATATTACAT-TTTTCCTTGAAAACATC 59
Query 58 TC-AAG---AAAATCTTTAA-CCC--C---T--------GGAGACAGAGAAG-A-AGAGA 97
|| | | ||||||||||| ||| | | |||||||||| || | |||||
Sbjct 60 TCGAGGTTCAAAATCTTTAACCCCTACAAATCAAGAAAAGGAGACAGAGGAGAAGAGAGA 119
Query 98 AAAGAAATACCCAGAATCAATGTCTTATTCTTCCCTCAAATTGCCAATCTTTCTCATTCT 157
||||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 AAAGAAAAACGCAGAAACAATGTCTTTTTCTTCCCTCAAATTGCCAATCTTTCTCATTCT 179
Query 158 CTCATCTCTTCTCCATGCGGCGT-TAGGGGAAAACATTATATGCGAGAATCTGCCAACAA 216
|||| ||||||||||||||| | |||||||||||||| | |||||||||||||||||||
Sbjct 180 CTCAAGTCTTCTCCATGCGGC-TATAGGGGAAAACATTGTTTGCGAGAATCTGCCAACAA 238
Query 217 CTATGTGCGCGTTCTCAATATCTGCTTCCGGTAAAAGATGTATATTGGAGACGGCTAATG 276
||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 239 ATATGTGCTCGTTCTCAATATCCGCTTCCGGGAAAAGATGTATATTGGAGACGGCTAATG 298
Query 277 TCGCCGGAGAATTCACTTGCCGGACTTCCGCAGTGGACGTGGAAGGGATTGTAAACCACG 336
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 TCGCCGGAGAATTCACTTGCCGCACTTCCGCAGTGGACGTGGAAGGGATTGTAAACCACG 358
Query 337 TGGAGACCGACGAGTGCGTTGCCGCTTGTGGGGTTGATCGGAAAACCGTAGGAATCTCGT 396
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 359 TGGAGACCGACGAGTGCGTTTCCGCTTGTGGGGTTGATCGGAAAACCGTAGGGATCTCGT 418
Query 397 CCGACTCATTGATGGAAGCAGGATTT-GCCGCTAAGCTTTGCTCATCTGCCTGCTTGAAC 455
| ||||| |||||||| ||||| ||| |||||||||||||||||||| || |||||| ||
Sbjct 419 CAGACTCCTTGATGGAGGCAGG-TTTCGCCGCTAAGCTTTGCTCATCCGCTTGCTTGGAC 477
Query 456 TTTTGCCCTAACATTCTTGATCTCTATTTCAATCTAGCCGCTGGTGAAGGTGTATTTTTA 515
| |||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||
Sbjct 478 TATTGCCCTAACATTCTTGATCTCTATTTCAACCTCGCCGCCGGTGAAGGTGCATTTTTA 537
Query 516 CCTGATCTCTGCGATGCTCAACGGATGAATCCTCACCGTTCGATGTTGGAAATCCTCAGC 575
|||||||| || |||||||||||||||||||| || ||||||||| ||||| || |||||
Sbjct 538 CCTGATCTATGTGATGCTCAACGGATGAATCCCCAGCGTTCGATGATGGAATTCATCAGC 597
Query 576 TCCGGCGCTGCGCCAGGCCCTGTTTCCGAGGTTGCACCAGGCCCAACCTCCGAAGATGTC 635
|||||||| || ||||||||||| ||||| ||||||||||||| ||||||||||| |||
Sbjct 598 TCCGGCGCCGCACCAGGCCCTGTCTCCGAAATTGCACCAGGCCCCACCTCCGAAGAAGTC 657
Query 636 TCATCTCCTGCTCTAGCTCCGGCGTCTATGTAAAATGTTCATTAATTCCACATGTGTGTC 695
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 658 TCATCTCCTGCTCTAGCTCCGGCTTCTATGTAAAATGTTCATTAATTCCACATGTGT-T- 715
Query 696 ATAATACTTTATATTAATATTTTCGATTGATGATG-TCCATATATAATGGACCGTATCTT 754
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 716 -TAATACTTTATATTTATATTTTCGATTGATGATGATCCATATATAATGGACCGTATCTT 774
Query 755 ACACTTTCTATGATTTGATGCCGATATCATCAAT--AT--A-A-GAG-G--GA-GGATAC 804
||| ||||||||||||||| | |||||||||||| || | | || | || ||||||
Sbjct 775 ACATTTTCTATGATTTGATACGGATATCATCAATTGATTCATATGAAAGAAGAAGGATAC 834
Query 805 AGAGTGGGTTTGATTTTTGTTTCTGTTTCATAATCAACATTTCACTGTATAATAACAACT 864
|||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 835 AGAGTGAGCTTGATTTTTGTTTATGTTTCTTAATCAACATTTCACTGTATAATAACAACT 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5