BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485803 Length=1742 Score E Sequences producing significant alignments: (Bits) Value AT3G54060.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2041 0.0 AT2G37960.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 195 2e-48 > AT3G54060.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37960.2); Has 455 Blast hits to 322 proteins in 98 species: Archae - 0; Bacteria - 178; Metazoa - 88; Fungi - 75; Plants - 28; Viruses - 2; Other Eukaryotes - 84 (source: NCBI BLink). | chr3:20018661-20020926 REVERSE LENGTH=1725 Length=1725 Score = 2041 bits (1105), Expect = 0.0 Identities = 1558/1760 (89%), Gaps = 97/1760 (6%) Strand=Plus/Plus Query 1 TTCTTCAGGTCTTTTCAACTTCGctctctccctctctctctATTGAATCATCTTCGTGTT 60 ||||||||||||||||||||||| |||||||||| ||| |||| |||||||| Sbjct 15 TTCTTCAGGTCTTTTCAACTTCG--------CTCTCTCTCT-TTGCTTCATATTCGTGTT 65 Query 61 AACTAGGGTTTTCGATTTA-TCAGAAGACATAGCAATAATGGGGAAATCGAGCAGATCGA 119 || |||||||||||||| | |||||||||| ||| ||||||||||||||||||||| | Sbjct 66 AATTAGGGTTTTCGATTAATTCAGAAGACACAGC---AATGGGGAAATCGAGCAGATCTA 122 Query 120 AAGGATCGAGTATCATCGGGAAAGGTGAAGTTACCCCAACGCAAATTGCTTTTATCGTCG 179 ||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 123 AAGGATCGAATCTCATCGGCAAAGGTGAAGTTACCCCAACGCAAGTTGCTTTTATCGTCG 182 Query 180 ATCGCTATCTCTACGACAATCGATTTTCAGAAACCCGAAACCTCTTTAGATCTGAAGCTT 239 ||||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||||| Sbjct 183 ATCGCTATCTCCACGACAATCGATTCTCAGAAACTCGAGCCCTCTTTAGATCTGAAGCTT 242 Query 240 CTTCTCTCATCTCTAATTCCCCAATTCGCCAA-GTTCCGAATAGTTTGATGACTCTTGAT 298 |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 243 CTTCTCTCATCTCTGATTCCCCAATTCG-CAATGTTCCGAATAGTTTGATGACTCTTGAT 301 Query 299 GCTATGTTGAACCATTACGTATCTTTAAAGGAGCAGAAAGTGAGTCTCGATCAAGAGAAA 358 |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| Sbjct 302 GCTATGTTGAACCATTACGTATCTCTAAAGAAGCAGAAAGTGAGTCTGGATCAAGAGAAA 361 Query 359 GTGAAATTGGATCAGGAAAAAATTAGGGTTCAAAATCTGTTGCAGGGGATGCAAAATGTG 418 ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| Sbjct 362 CTGAAATTGGATCAAGAGAAAATTAGGGTTCAAAATCTGTTGCAGGGGATGGAAAATGTG 421 Query 419 ATGAATTCGTACAACGCTAGCCTCACCGctcctcctcctcctcctccGGCTTCAGCTCCG 478 |||||| | ||||||||||||||||||| |||||||||||||||||||||| Sbjct 422 ATGAATACTTACAACGCTAGCCTCACCG---------CTCCTCCTCCGGCTTCAGCTCCA 472 Query 479 ACTTTTCAACAG-AAAATCAACAGCGTATCTTCTTCAGGCTTAACTCAGTACAACACACC 537 |||| ||||||| |||||| |||| | ||||||||||||||| ||||||||||||||| Sbjct 473 ACTTCTCAACAGAAAAATC-ACAGTATCTCTTCTTCAGGCTTATCTCAGTACAACACACT 531 Query 538 AAATGTTATGTCAGTATCATTGCTAGGTAACAAAAGAGTCGATTTTCGGAATTTTTCCAC 597 ||||| |||||||||||||||||| |||||||||||||| |||||| ||||||||||||| Sbjct 532 AAATGGTATGTCAGTATCATTGCTTGGTAACAAAAGAGTAGATTTTGGGAATTTTTCCAC 591 Query 598 ACCTTCGACCAGTCAGTCTATTACCGGGAAAAGAAAAGGTCCTGAAGTTTCTGTAAGAGC 657 ||||||||| ||||||||||| || |||||| |||||||||||||||||||||||| ||| Sbjct 592 ACCTTCGACGAGTCAGTCTATAACTGGGAAACGAAAAGGTCCTGAAGTTTCTGTAACAGC 651 Query 658 TCCTCCGGTAACTAGGAAAGCGCGGATTTCTACAGCAACTGGGACTAATAAGAT-CTCAC 716 |||||||||| |||||||| | |||| ||| ||||||||||||||||||| | | ||| Sbjct 652 TCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGGGACTAATAAGTTGC-CAC 710 Query 717 AAGCTGATAAAGCAGCTAACAATTTCTCATCCCAAACCCCATCTGAAACATTAGC-GTTG 775 |||||||||||||||||||||| | | | | | ||||||||||| |||| | || Sbjct 711 AAGCTGATAAAGCAGCTAACAA--T-T--T--C--A---CATCTGAAACACTAGCAG-TG 757 Query 776 GCCAAAAACTCTGCAACTAATGAATTGATTGGTCATGGGTCAAGTGTGGTGAAGTGCTTG 835 || ||||||||||||| |||||| ||||||||| |||||||||||||||||||||| ||| Sbjct 758 GCTAAAAACTCTGCAAGTAATGAGTTGATTGGTAATGGGTCAAGTGTGGTGAAGTGTTTG 817 Query 836 TTCAATAAGGCTGATTCCTCAGTTCCTACTAGTTCAACATGCCTTAGGACACCACAAAAA 895 ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| Sbjct 818 TTCAATAAGGCTGATTCGTCTGTTCCTACTAGTTCAACATGCTTTAGGACACCACAAAAA 877 Query 896 CATGCTTCTCCTGGGAGTGATAAGTCCAACAGTCCCCAGAAAGAAGTTACT-C--C---T 949 ||||||||| ||||||||||||||||||||||| ||||||||||||||||| | | | Sbjct 878 CATGCTTCTTCTGGGAGTGATAAGTCCAACAGTTCCCAGAAAGAAGTTACTCCTACAAAT 937 Query 950 ACAAACTGCACAATTGTTACAAAGGAGAGATTCACAGTCAGTCCTCTCAAGCAAATTACT 1009 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 938 ACAAACTGCACAATTGTTACAAAGGAGAGATTCACAATCAGCCCTCTCAAGCAAATTACT 997 Query 1010 TCTTATTCAGTGGAAAGAAGCCATCTAATTTC---TTGTTCGCCGGTCAAGTCTAACCTG 1066 |||||||||||||||||||||||||| ||||| || ||| |||||||||||||||||| Sbjct 998 TCTTATTCAGTGGAAAGAAGCCATCTTATTTCTTTTTCTTCACCGGTCAAGTCTAACCTG 1057 Query 1067 AAGATGTCAAATAAGAGAGACCATGTGAAAGGAAAGCTCAACTTTGATGACACTGATACA 1126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1058 AAGATGTCAAATAAGAGAGACCATGTGAAAGGAAAGCTCAACTTTGATGACACTGACACA 1117 Query 1127 GAAATGTGCTTAGAGGCACCTGCCTCTACAGATTTAGTTTCAACTTCTCCATCCGGGTCT 1186 |||| ||||||||||||||||||| || ||||||||||||||||||||||||| |||||| Sbjct 1118 GAAACGTGCTTAGAGGCACCTGCCACTGCAGATTTAGTTTCAACTTCTCCATCTGGGTCT 1177 Query 1187 GAGCCAGAAGTTGATTTATTTGACATGGACTTTTCTAATCTGGATTTCTTGGGTGAAAAC 1246 ||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 1178 GAGCCAGAAGTTGATTTGTTTGACATGGACTTTTCTAATCTGGATTTCT----------C 1227 Query 1247 TTCACACTCTCGGAGCTACTAGTTGATTTCGATCTTGATTGTGAAGGAAGTACAAATCAT 1306 |||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1228 -----------GGAGCTACTAGTTGATTTCGATCTTGGTTGTGAAGGAAGTGCAAATCAT 1276 Query 1307 TGCTTGTCACAGACCCCAAATCAACCCATTGAAACTGTTTCAGGCTCCTCTCCTGAATCA 1366 |||||||||| ||||||||||||||||| | ||||||||||||| || |||||||||||| Sbjct 1277 TGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGGTCGTCTCCTGAATCA 1336 Query 1367 GGGGAT-GCTAATCTCGAGTCTGACCAGGCCTTTTTGGAATATACATCAACCGTGACTGA 1425 |||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1337 GGGGATTG-TAATCTCGAGTCTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGA 1395 Query 1426 AGTGATTCAAGGGAAAGACATGAGCAGTCAAGATATTGATCATCTCCCTAACTCGAGCCA 1485 ||||||||| | || || | | | |||||||| |||| ||||||||||||| Sbjct 1396 TGTGATTCAA---ATTT-CA--AG-A-T---G-TATTGATCCTCTCTCTAACTCGAGCCA 1443 Query 1486 TTCTTCTCTTAACACAGCCAAGGTTTGAAGG-AAGAGAGTGACATGACAGACAATTGACT 1544 ||||||||||||||||| |||| |||||| | || ||||||||||||||||||||||||| Sbjct 1444 TTCTTCTCTTAACACAGACAAGATTTGAAAGCAA-AGAGTGACATGACAGACAATTGACT 1502 Query 1545 GATTTTGAAGACTACGATTGACTCCAAGACCACCAATGCACGATCCTCTACTTT-TGCCT 1603 |||||||||||||| ||||||||||||||||||||||||| |||||||| ||| | ||| Sbjct 1503 GATTTTGAAGACTATGATTGACTCCAAGACCACCAATGCAAGATCCTCTGTTTTCT-CCT 1561 Query 1604 AACTATGCTGCTCAGTGCTAATACTTGTAATGGTCTGTGAAATATGAAAATGCTATCCCC 1663 ||||||||||| |||||| || ||||||||| ||||||||||||||||| |||||||| Sbjct 1562 TACTATGCTGCT-AGTGCTTATTCTTGTAATGATCTGTGAAATATGAAAAGGCTATCCCA 1620 Query 1664 TAA-GTTCGCTCCTAATTAACTAGTATCTATTACATGTAGTTGTATAAATTAAACTTGGA 1722 ||| || ||| |||||||||||||| || ||||||| |||||||||||||||||| Sbjct 1621 TAACGTA-GCTTATAATTAACTAGTAT-TA---CATGTAGGTGTATAAATTAAACTTGGT 1675 Query 1723 TTTTTGGTCTATTGTTTTAA 1742 |||||||||||| ||||||| Sbjct 1676 TTTTTGGTCTATAGTTTTAA 1695 > AT2G37960.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 418 Blast hits to 247 proteins in 92 species: Archae - 0; Bacteria - 163; Metazoa - 49; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). | chr2:15886548-15889220 REVERSE LENGTH=1793 Length=1793 Score = 195 bits (105), Expect = 2e-48 Identities = 272/350 (78%), Gaps = 22/350 (6%) Strand=Plus/Plus Query 129 GTATCATCGGGAAAGGTGAAGTTACCCCAACGCAAATTGCTTTTATCGTCGATCGCTATC 188 |||| || || || ||||||||||| || | ||| | || || |||||||||| || | Sbjct 75 GTATAATAGGCAATGGTGAAGTTACTCCGATTCAAGTCGCCTTCCTCGTCGATCGATACC 134 Query 189 TCTACGACAATCGATTTTCAGAAACCCGAAAC-CTCTTT-AGATCTGAAGCTTCTTCTCT 246 ||| ||| ||||| |||||| ||||| | | | || ||| |||||||||||||||||||| Sbjct 135 TCTGCGATAATCGCTTTTCAAAAACCAG-ATCACT-TTTCAGATCTGAAGCTTCTTCTCT 192 Query 247 CATCTCTAATTCCCCAATTCGCCAAGTTCCGAATAGTTTGATGACTCTT-GA-TGCTATG 304 |||||||||||| ||| ||||| ||||||||||||||||| | || ||| || || || Sbjct 193 CATCTCTAATTCTCCAGTTCGCGAAGTTCCGAATAGTTTGTT-AC-CTTTGAATGAGATT 250 Query 305 TTGAACCATTACGTATCTT-TAAAGGAGCAGAA-AGTGAGTCTCGATCAAGAGAAAGT-G 361 || ||| | ||| | || | | ||| || |||| | || | | ||||| |||||| | | Sbjct 251 TTAAACGAATACAT-TCGTCTCAAGAAGGAGAAGATTGTGA-TGGATCAGGAGAAA-TCG 307 Query 362 AAATTGGATCAGGAAAAAATTAGGGTTCAAAATCTGTTGCAGGGGATGCAAAATGTGATG 421 ||| ||||||| || |||| | | ||||| ||||| ||| | ||||||||| |||||||| Sbjct 308 AAACTGGATCAAGAGAAAACTCGAGTTCAGAATCTATTGAATGGGATGCAAGATGTGATG 367 Query 422 AATTCGTACAACGCTAGCCTC-ACCGct-c--ctcctcctcctcctccGG 467 ||| | || ||| | |||| ||||| | |||||||||||||||||| Sbjct 368 AATGCTTATAAC--T--CCTCCACCGCCGCAGCTCCTCCTCCTCCTCCGG 413 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86144135220 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5