BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485803
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54060.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2041 0.0
AT2G37960.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 195 2e-48
> AT3G54060.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G37960.2);
Has 455 Blast hits to 322 proteins in 98 species: Archae -
0; Bacteria - 178; Metazoa - 88; Fungi - 75; Plants - 28; Viruses
- 2; Other Eukaryotes - 84 (source: NCBI BLink). | chr3:20018661-20020926
REVERSE LENGTH=1725
Length=1725
Score = 2041 bits (1105), Expect = 0.0
Identities = 1558/1760 (89%), Gaps = 97/1760 (6%)
Strand=Plus/Plus
Query 1 TTCTTCAGGTCTTTTCAACTTCGctctctccctctctctctATTGAATCATCTTCGTGTT 60
||||||||||||||||||||||| |||||||||| ||| |||| ||||||||
Sbjct 15 TTCTTCAGGTCTTTTCAACTTCG--------CTCTCTCTCT-TTGCTTCATATTCGTGTT 65
Query 61 AACTAGGGTTTTCGATTTA-TCAGAAGACATAGCAATAATGGGGAAATCGAGCAGATCGA 119
|| |||||||||||||| | |||||||||| ||| ||||||||||||||||||||| |
Sbjct 66 AATTAGGGTTTTCGATTAATTCAGAAGACACAGC---AATGGGGAAATCGAGCAGATCTA 122
Query 120 AAGGATCGAGTATCATCGGGAAAGGTGAAGTTACCCCAACGCAAATTGCTTTTATCGTCG 179
||||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 123 AAGGATCGAATCTCATCGGCAAAGGTGAAGTTACCCCAACGCAAGTTGCTTTTATCGTCG 182
Query 180 ATCGCTATCTCTACGACAATCGATTTTCAGAAACCCGAAACCTCTTTAGATCTGAAGCTT 239
||||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 183 ATCGCTATCTCCACGACAATCGATTCTCAGAAACTCGAGCCCTCTTTAGATCTGAAGCTT 242
Query 240 CTTCTCTCATCTCTAATTCCCCAATTCGCCAA-GTTCCGAATAGTTTGATGACTCTTGAT 298
|||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 243 CTTCTCTCATCTCTGATTCCCCAATTCG-CAATGTTCCGAATAGTTTGATGACTCTTGAT 301
Query 299 GCTATGTTGAACCATTACGTATCTTTAAAGGAGCAGAAAGTGAGTCTCGATCAAGAGAAA 358
|||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct 302 GCTATGTTGAACCATTACGTATCTCTAAAGAAGCAGAAAGTGAGTCTGGATCAAGAGAAA 361
Query 359 GTGAAATTGGATCAGGAAAAAATTAGGGTTCAAAATCTGTTGCAGGGGATGCAAAATGTG 418
||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 362 CTGAAATTGGATCAAGAGAAAATTAGGGTTCAAAATCTGTTGCAGGGGATGGAAAATGTG 421
Query 419 ATGAATTCGTACAACGCTAGCCTCACCGctcctcctcctcctcctccGGCTTCAGCTCCG 478
|||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 422 ATGAATACTTACAACGCTAGCCTCACCG---------CTCCTCCTCCGGCTTCAGCTCCA 472
Query 479 ACTTTTCAACAG-AAAATCAACAGCGTATCTTCTTCAGGCTTAACTCAGTACAACACACC 537
|||| ||||||| |||||| |||| | ||||||||||||||| |||||||||||||||
Sbjct 473 ACTTCTCAACAGAAAAATC-ACAGTATCTCTTCTTCAGGCTTATCTCAGTACAACACACT 531
Query 538 AAATGTTATGTCAGTATCATTGCTAGGTAACAAAAGAGTCGATTTTCGGAATTTTTCCAC 597
||||| |||||||||||||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 532 AAATGGTATGTCAGTATCATTGCTTGGTAACAAAAGAGTAGATTTTGGGAATTTTTCCAC 591
Query 598 ACCTTCGACCAGTCAGTCTATTACCGGGAAAAGAAAAGGTCCTGAAGTTTCTGTAAGAGC 657
||||||||| ||||||||||| || |||||| |||||||||||||||||||||||| |||
Sbjct 592 ACCTTCGACGAGTCAGTCTATAACTGGGAAACGAAAAGGTCCTGAAGTTTCTGTAACAGC 651
Query 658 TCCTCCGGTAACTAGGAAAGCGCGGATTTCTACAGCAACTGGGACTAATAAGAT-CTCAC 716
|||||||||| |||||||| | |||| ||| ||||||||||||||||||| | | |||
Sbjct 652 TCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGGGACTAATAAGTTGC-CAC 710
Query 717 AAGCTGATAAAGCAGCTAACAATTTCTCATCCCAAACCCCATCTGAAACATTAGC-GTTG 775
|||||||||||||||||||||| | | | | | ||||||||||| |||| | ||
Sbjct 711 AAGCTGATAAAGCAGCTAACAA--T-T--T--C--A---CATCTGAAACACTAGCAG-TG 757
Query 776 GCCAAAAACTCTGCAACTAATGAATTGATTGGTCATGGGTCAAGTGTGGTGAAGTGCTTG 835
|| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 758 GCTAAAAACTCTGCAAGTAATGAGTTGATTGGTAATGGGTCAAGTGTGGTGAAGTGTTTG 817
Query 836 TTCAATAAGGCTGATTCCTCAGTTCCTACTAGTTCAACATGCCTTAGGACACCACAAAAA 895
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 818 TTCAATAAGGCTGATTCGTCTGTTCCTACTAGTTCAACATGCTTTAGGACACCACAAAAA 877
Query 896 CATGCTTCTCCTGGGAGTGATAAGTCCAACAGTCCCCAGAAAGAAGTTACT-C--C---T 949
||||||||| ||||||||||||||||||||||| ||||||||||||||||| | | |
Sbjct 878 CATGCTTCTTCTGGGAGTGATAAGTCCAACAGTTCCCAGAAAGAAGTTACTCCTACAAAT 937
Query 950 ACAAACTGCACAATTGTTACAAAGGAGAGATTCACAGTCAGTCCTCTCAAGCAAATTACT 1009
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 938 ACAAACTGCACAATTGTTACAAAGGAGAGATTCACAATCAGCCCTCTCAAGCAAATTACT 997
Query 1010 TCTTATTCAGTGGAAAGAAGCCATCTAATTTC---TTGTTCGCCGGTCAAGTCTAACCTG 1066
|||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||
Sbjct 998 TCTTATTCAGTGGAAAGAAGCCATCTTATTTCTTTTTCTTCACCGGTCAAGTCTAACCTG 1057
Query 1067 AAGATGTCAAATAAGAGAGACCATGTGAAAGGAAAGCTCAACTTTGATGACACTGATACA 1126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1058 AAGATGTCAAATAAGAGAGACCATGTGAAAGGAAAGCTCAACTTTGATGACACTGACACA 1117
Query 1127 GAAATGTGCTTAGAGGCACCTGCCTCTACAGATTTAGTTTCAACTTCTCCATCCGGGTCT 1186
|||| ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 1118 GAAACGTGCTTAGAGGCACCTGCCACTGCAGATTTAGTTTCAACTTCTCCATCTGGGTCT 1177
Query 1187 GAGCCAGAAGTTGATTTATTTGACATGGACTTTTCTAATCTGGATTTCTTGGGTGAAAAC 1246
||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1178 GAGCCAGAAGTTGATTTGTTTGACATGGACTTTTCTAATCTGGATTTCT----------C 1227
Query 1247 TTCACACTCTCGGAGCTACTAGTTGATTTCGATCTTGATTGTGAAGGAAGTACAAATCAT 1306
|||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1228 -----------GGAGCTACTAGTTGATTTCGATCTTGGTTGTGAAGGAAGTGCAAATCAT 1276
Query 1307 TGCTTGTCACAGACCCCAAATCAACCCATTGAAACTGTTTCAGGCTCCTCTCCTGAATCA 1366
|||||||||| ||||||||||||||||| | ||||||||||||| || ||||||||||||
Sbjct 1277 TGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGGTCGTCTCCTGAATCA 1336
Query 1367 GGGGAT-GCTAATCTCGAGTCTGACCAGGCCTTTTTGGAATATACATCAACCGTGACTGA 1425
|||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1337 GGGGATTG-TAATCTCGAGTCTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGA 1395
Query 1426 AGTGATTCAAGGGAAAGACATGAGCAGTCAAGATATTGATCATCTCCCTAACTCGAGCCA 1485
||||||||| | || || | | | |||||||| |||| |||||||||||||
Sbjct 1396 TGTGATTCAA---ATTT-CA--AG-A-T---G-TATTGATCCTCTCTCTAACTCGAGCCA 1443
Query 1486 TTCTTCTCTTAACACAGCCAAGGTTTGAAGG-AAGAGAGTGACATGACAGACAATTGACT 1544
||||||||||||||||| |||| |||||| | || |||||||||||||||||||||||||
Sbjct 1444 TTCTTCTCTTAACACAGACAAGATTTGAAAGCAA-AGAGTGACATGACAGACAATTGACT 1502
Query 1545 GATTTTGAAGACTACGATTGACTCCAAGACCACCAATGCACGATCCTCTACTTT-TGCCT 1603
|||||||||||||| ||||||||||||||||||||||||| |||||||| ||| | |||
Sbjct 1503 GATTTTGAAGACTATGATTGACTCCAAGACCACCAATGCAAGATCCTCTGTTTTCT-CCT 1561
Query 1604 AACTATGCTGCTCAGTGCTAATACTTGTAATGGTCTGTGAAATATGAAAATGCTATCCCC 1663
||||||||||| |||||| || ||||||||| ||||||||||||||||| ||||||||
Sbjct 1562 TACTATGCTGCT-AGTGCTTATTCTTGTAATGATCTGTGAAATATGAAAAGGCTATCCCA 1620
Query 1664 TAA-GTTCGCTCCTAATTAACTAGTATCTATTACATGTAGTTGTATAAATTAAACTTGGA 1722
||| || ||| |||||||||||||| || ||||||| ||||||||||||||||||
Sbjct 1621 TAACGTA-GCTTATAATTAACTAGTAT-TA---CATGTAGGTGTATAAATTAAACTTGGT 1675
Query 1723 TTTTTGGTCTATTGTTTTAA 1742
|||||||||||| |||||||
Sbjct 1676 TTTTTGGTCTATAGTTTTAA 1695
> AT2G37960.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G54060.2);
Has 418 Blast hits to 247 proteins in 92 species: Archae -
0; Bacteria - 163; Metazoa - 49; Fungi - 80; Plants - 28; Viruses
- 0; Other Eukaryotes - 98 (source: NCBI BLink). | chr2:15886548-15889220
REVERSE LENGTH=1793
Length=1793
Score = 195 bits (105), Expect = 2e-48
Identities = 272/350 (78%), Gaps = 22/350 (6%)
Strand=Plus/Plus
Query 129 GTATCATCGGGAAAGGTGAAGTTACCCCAACGCAAATTGCTTTTATCGTCGATCGCTATC 188
|||| || || || ||||||||||| || | ||| | || || |||||||||| || |
Sbjct 75 GTATAATAGGCAATGGTGAAGTTACTCCGATTCAAGTCGCCTTCCTCGTCGATCGATACC 134
Query 189 TCTACGACAATCGATTTTCAGAAACCCGAAAC-CTCTTT-AGATCTGAAGCTTCTTCTCT 246
||| ||| ||||| |||||| ||||| | | | || ||| ||||||||||||||||||||
Sbjct 135 TCTGCGATAATCGCTTTTCAAAAACCAG-ATCACT-TTTCAGATCTGAAGCTTCTTCTCT 192
Query 247 CATCTCTAATTCCCCAATTCGCCAAGTTCCGAATAGTTTGATGACTCTT-GA-TGCTATG 304
|||||||||||| ||| ||||| ||||||||||||||||| | || ||| || || ||
Sbjct 193 CATCTCTAATTCTCCAGTTCGCGAAGTTCCGAATAGTTTGTT-AC-CTTTGAATGAGATT 250
Query 305 TTGAACCATTACGTATCTT-TAAAGGAGCAGAA-AGTGAGTCTCGATCAAGAGAAAGT-G 361
|| ||| | ||| | || | | ||| || |||| | || | | ||||| |||||| | |
Sbjct 251 TTAAACGAATACAT-TCGTCTCAAGAAGGAGAAGATTGTGA-TGGATCAGGAGAAA-TCG 307
Query 362 AAATTGGATCAGGAAAAAATTAGGGTTCAAAATCTGTTGCAGGGGATGCAAAATGTGATG 421
||| ||||||| || |||| | | ||||| ||||| ||| | ||||||||| ||||||||
Sbjct 308 AAACTGGATCAAGAGAAAACTCGAGTTCAGAATCTATTGAATGGGATGCAAGATGTGATG 367
Query 422 AATTCGTACAACGCTAGCCTC-ACCGct-c--ctcctcctcctcctccGG 467
||| | || ||| | |||| ||||| | ||||||||||||||||||
Sbjct 368 AATGCTTATAAC--T--CCTCCACCGCCGCAGCTCCTCCTCCTCCTCCGG 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86144135220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5