BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485806
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54090.1 | Symbols: FLN1 | fructokinase-like 1 | chr3:200281... 2278 0.0
> AT3G54090.1 | Symbols: FLN1 | fructokinase-like 1 | chr3:20028124-20029986
FORWARD LENGTH=1588
Length=1588
Score = 2278 bits (1233), Expect = 0.0
Identities = 1464/1572 (93%), Gaps = 29/1572 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCTTCTTCTTTTTCCTCATCTTCATCATTTTGATTCTTCACTAGATCGTAGA 60
|||||||| |||||| |||| || || ||||| ||||||||||||||||| || ||||||
Sbjct 22 ATGGCTTCACTTCTTATTTTCCCCCACCTTCACCATTTTGATTCTTCACTGGACCGTAGA 81
Query 61 GAGATAGTAGTAGGAGCTCGAGATTCACCAA-AATCAAGGCGATTTTTCACTCCGAGAGC 119
||| ||| ||| || ||| ||||| ||| ||||||||||||| ||||||||| |||
Sbjct 82 GAG---GTACTAGTAGTTCGCCATTCA-CAAGCATCAAGGCGATTTCTCACTCCGAAAGC 137
Query 120 TTCAATTAATGGCGGCAAAATCACAAACGGAGCAGCAGCGGAAACCGCCGCTAAACCTAG 179
||||||||||||| || ||||||||||||||| |||||||||||| || ||||||||||
Sbjct 138 TTCAATTAATGGCAGCGGAATCACAAACGGAGCTGCAGCGGAAACCACCTCTAAACCTAG 197
Query 180 TCGCAAAGGGAGGAAGAAGAAGCAAACCTCGACGGTAATTGAGGAAGATAACACCGAGAA 239
||||||||||||||||||||||||||| |||||||||||| | || | | || |
Sbjct 198 TCGCAAAGGGAGGAAGAAGAAGCAAACATCGACGGTAATT---G-AG---A-A---AG-A 245
Query 240 CGATACTACCGAGACTGATCCTGAATTGAATCCGGAGTTAG-TGGATTACGACGATGGGA 298
| || |||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 246 -TA-AC-ACCGAGACTGATCCTGAATTGAATCCGGAGTTAGCT-GATTACGACGACGGGA 301
Query 299 TCGAGTTTCCCTACGATGACCCGCCTCTTGTGTGCTGTTTCGGAGCTGTACAGAAGGAAT 358
|||||||||| ||||| || |||||||||||||| || |||||||||||||||||||| |
Sbjct 302 TCGAGTTTCCGTACGACGATCCGCCTCTTGTGTGTTGCTTCGGAGCTGTACAGAAGGAGT 361
Query 359 TTGTTCCGGTGGTGCGAGTCCATGATAATCCGATGCATCCTGACATGTACTCGCAGTGGA 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 362 TTGTTCCGGTGGTGCGAGTCCATGATAATCCGATGCATCCTGATATGTACTCGCAGTGGA 421
Query 419 AGATGTTGCAGTGGGATCCGCCGGAGTTTGGGCGTGCTCCGGGAGGTCCGCCGTCGAATG 478
||||| | ||||||||||| |||||||||||| | |||||||||||||||||||||||||
Sbjct 422 AGATGCTACAGTGGGATCCACCGGAGTTTGGGAGAGCTCCGGGAGGTCCGCCGTCGAATG 481
Query 479 TGGCGATCTCTCATGTCCGGTTAGGTGGGAGAGCGGCGTTTATGGGGAAAGTCGGTGAAG 538
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 482 TGGCGATCTCTCATGTACGGTTAGGTGGGAGAGCTGCGTTTATGGGGAAAGTAGGTGAAG 541
Query 539 ATGATTTTGGGGATGAGCTGGTTCTGATGATGAATCAGGAGAGAGTTCAGACGAGAGCTG 598
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATGATTTTGGAGATGAGCTTGTTCTGATGATGAATCAGGAGAGAGTTCAGACGAGAGCTG 601
Query 599 TAAAATTCGATGAGCATTCAAAAACTGCTTGTACTCGCGTCAAGATCAAGTTTAAGGACG 658
| |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 602 TGAAATTCGATGAGAATTCGAAAACTGCTTGTACTCGTGTCAAGATCAAGTTTAAGGACG 661
Query 659 GGAAAATGAAGGCGGAGACGGTGAAAGAGCCGCCGGAGGACTCGCT-TCTTGCTTCAGAA 717
||||||||| ||||||||| |||||||| || || ||||||||||| | |||||||||||
Sbjct 662 GGAAAATGATGGCGGAGACTGTGAAAGAACCACCTGAGGACTCGCTAT-TTGCTTCAGAA 720
Query 718 CTCAATTTAGCTGTGCTTAAAGAGGCTAGGATTTTTCATTTCAATTCAGAAGTGTTAACG 777
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 721 CTCAATTTAGCTGTGCTTAAAGAGGCGAGGATTTTTCATTTCAATTCAGAAGTGTTGACG 780
Query 778 TCTCCTACAATGCAATCAACTCTTTTTACGGCAATACAATGGTCTAAAAAGTTTGGAGGG 837
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 781 TCTCCTACAATGCAATCAACTCTTTTTACGGCAATACAATGGTCTAAGAAGTTTGGTGGG 840
Query 838 CTTATTTTCTTTGACTTGAATCTTCCATTACCGCTATGGAGATCGCGCAACGAGACTAGG 897
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 841 CTTATTTTCTTTGACTTGAATCTCCCATTACCGCTGTGGAGATCGCGCAATGAGACTAGG 900
Query 898 AAGTTGATCAAGAAAGCATGGAATGAAGCAAACATTATTGAAGTTTCACAGCAAGAGCTT 957
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 AAGTTGATCAAGAAAGCATGGAATGAAGCAAACATCATTGAAGTTTCACAGCAAGAGCTT 960
Query 958 GAGTTTCTACTTGATGAAGATTACTACGAGAGAAGAAGAAACTACACACCACAATACTTT 1017
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 961 GAGTTTCTACTTGATGAAGATTACTACGAGAGGAGAAGAAACTACACACCACAGTACTTC 1020
Query 1018 GCTGAGGATTTTGATCAGACGAAAAACCGAAGAGACTATTACCATTACACACCAGAGGAA 1077
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1021 GCTGAGGATTTTGATCAGACGAAAAACAGAAGAGACTATTACCATTACACACCAGAGGAA 1080
Query 1078 ATCAAGTCATTGTGGCATGACAAGCTGAAGCTATTGGTTGTGACTGACGGAACACTTCGG 1137
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1081 ATCAAGTCATTGTGGCATGACAAGCTGAAGCTACTGGTTGTGACTGATGGAACACTTCGG 1140
Query 1138 CTTCATTACTATACTCCTACTTTTGATGGAGTTGTGATTGGAACGGAAGATGTGCTTATA 1197
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1141 CTTCATTACTATACTCCTACTTTTGATGGTGTTGTGATTGGAACAGAAGATGTGCTTATA 1200
Query 1198 ACTCCTTTCACCTGTGATAGGACAGGTTCTGGTGATGCTGTTGTTGCAGGGATAATGAGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ACTCCTTTCACCTGTGATAGGACAGGTTCTGGTGATGCTGTTGTTGCAGGGATAATGAGA 1260
Query 1258 AAGCTAACAACTTGTCCTGAGATGTTTGTGGACCAAGATGTGTTGGAGCGACAGCTCCGG 1317
|||||||||||||||||||||||||||| ||| || |||||| |||||||||||||| ||
Sbjct 1261 AAGCTAACAACTTGTCCTGAGATGTTTGAGGATCAGGATGTGATGGAGCGACAGCTCAGG 1320
Query 1318 TTTGCAGTTGCTGCTGGGATCATAGCGCAGTGGACAATTGGTGCAGTTAGAGGTTTCCCT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTTGCAGTTGCTGCTGGGATCATAGCGCAGTGGACAATTGGTGCAGTTAGAGGTTTCCCT 1380
Query 1378 ACTGAAAGCGCGACACAAAATTTGAAAGAACAAGTTTATGTTCCATCAATGTGGTAGAAT 1437
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 ACTGAAAGCGCGACACAGAATTTGAAAGAACAAGTTTATGTTCCATCAATGTGGTAGAAT 1440
Query 1438 AGAAGATGAAGAACTCAACTTGTATACTCAATGTTTTTGAACAATGTGTGAGATGTATAC 1497
||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1441 AGAAGATGAAGAACTGAACTTGTGTACTCAATGTTTTTGAACAATGTGTGAGTTGTATAC 1500
Query 1498 TGATTCAAATTTGTAATCCA-ATGAAATGTACTATCAATTTTTG-AGTT-AAGTCTGGAT 1554
||||||| |||||||||||| | ||||||||| |||||||||| |||| || |||||||
Sbjct 1501 TGATTCAGATTTGTAATCCAGA-GAAATGTACAATCAATTTTTTTAGTTCAA-TCTGGAT 1558
Query 1555 GGTCCAAGTCTT 1566
||||||||||||
Sbjct 1559 GGTCCAAGTCTT 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5