BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485808
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54110.1 | Symbols: ATPUMP1, UCP, PUMP1, ATUCP1, UCP1 | plan... 2037 0.0
AT3G54120.1 | Symbols: | Reticulon family protein | chr3:20041... 130 3e-29
> AT3G54110.1 | Symbols: ATPUMP1, UCP, PUMP1, ATUCP1, UCP1 | plant
uncoupling mitochondrial protein 1 | chr3:20038680-20041210
FORWARD LENGTH=1345
Length=1345
Score = 2037 bits (1103), Expect = 0.0
Identities = 1196/1240 (96%), Gaps = 9/1240 (1%)
Strand=Plus/Plus
Query 1 CGTCATCGTCGTCGTCCCTCTTCCCGAGATTATCTCTTCTCTGTTCTTCGATTTCGAAAC 60
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 111 CGTAATCGTCGTCGTCCCTCTTCCCGATATTATCTCTTCTCTGTTCTTCGATTTCGAAAC 170
Query 61 CCTAACCTCCTCT-TTCTGATTCGCGTTTTCTGGATCGAAGATGGTAGCTGCTGGCAAAT 119
||||||||||||| || | ||||||||||||||||||||||||||| || ||||| ||||
Sbjct 171 CCTAACCTCCTCTCTT-TAATTCGCGTTTTCTGGATCGAAGATGGTGGCGGCTGGTAAAT 229
Query 120 CCGACCTTTCCTTGCCCAAAACTTTCGCCTGCAGTGCTTTCGCTGCTTGCGTCGGCGAGG 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 230 CCGACCTTTCCTTGCCCAAAACTTTCGCCTGCAGTGCCTTCGCTGCTTGCGTCGGCGAGG 289
Query 180 TTTGCACAATTCCATTGGACACTGCTAAAGTTAGGCTTCAACTCCAAAAATCTGCTCTTG 239
| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 290 TATGCACAATTCCATTGGACACTGCTAAAGTTAGGCTTCAGCTCCAAAAGTCTGCTCTTG 349
Query 240 CTGGAGATGTTACTCTGCCTAAATATCGAGGATTATTGGGAACTGTTGGTACCATAGCAA 299
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 350 CTGGTGATGTTACTCTGCCTAAATATCGAGGATTGTTGGGAACTGTTGGTACCATAGCAA 409
Query 300 GGGAAGAAGGTTTACGTTCACTATGGAAAGGTGTTGTACCTGGATTGCATCGTCAATGCC 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GGGAAGAAGGGTTACGTTCACTATGGAAAGGTGTTGTACCTGGATTGCATCGTCAATGCC 469
Query 360 TTTTTGGAGGTCTTAGAATTGGAATGTATGAGCCGGTGAAAAACTTGTATGTTGGAAAAG 419
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TATTTGGAGGTCTTAGGATTGGAATGTATGAGCCGGTGAAAAACTTGTATGTTGGAAAAG 529
Query 420 ACTTTGTAGGTGATGTTCCATTGAGCAAGAAAATACTTGCTGGTTTGACAACAGGTGCAC 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 530 ACTTTGTAGGTGATGTTCCATTGAGCAAGAAAATTCTTGCTGGTTTGACAACAGGTGCAC 589
Query 480 TGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCTTCAGGCGGAAGGAA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 590 TGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCTTCAGGCCGAAGGAA 649
Query 540 AACTAGCTGCAGGTGCGCCAAGACGGTATTCTGGAGCGCTGAATGCGTATTCAACAATTG 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 650 AACTAGCTGCAGGTGCGCCAAGACGGTATTCTGGAGCGCTGAATGCTTATTCAACAATTG 709
Query 600 TGAGACAGGAAGGAGTCCGAGCTCTTTGGACTGGTCTTGGACCTAACGTAGCAAGAAACG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TGAGACAGGAAGGAGTCCGAGCTCTTTGGACTGGTCTTGGACCTAACGTAGCAAGAAACG 769
Query 660 CTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAGACAATCTTGAAGA 719
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 770 CTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAGACGATCTTGAAGA 829
Query 720 TTCCGGGTTTCACTGACAACGTTGTTACACATATTCTATCTGGACTGGGGGCAGGGTTCT 779
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 830 TTCCGGGTTTCACTGACAACGTTGTCACACATATTCTATCTGGACTGGGAGCAGGATTCT 889
Query 780 TTGCTGTCTGCATCGGCTCTCCTGTCGACGTGGTTAAGTCAAGAATGATGGGAGATTCTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TTGCTGTCTGCATCGGCTCTCCTGTCGACGTGGTTAAGTCAAGAATGATGGGAGATTCTG 949
Query 840 GTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACGGTCCCATGG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 950 GTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACGGTCCTATGG 1009
Query 900 CATTTTACAAGGGGTTCATCCCCAACTTTGGACGCCTTGGCTCATGGAACGTCATTATGT 959
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1010 CATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGCTCATGGAACGTAATCATGT 1069
Query 960 TTTTGACCCTCGAACAGGCAAAGAAGTATGTCCGGGAACTCGATGCGTCTAAAAGAAACT 1019
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1070 TTTTGACCCTCGAACAGGCAAAGAAGTATGTCCGGGAACTCGATGCGTCCAAAAGAAACT 1129
Query 1020 GAGACACAGAGTTTTAAGCAGAGGGAATAAGAGCTACATTGTTTTCTTCA-CAATTTTCG 1078
|||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1130 GAGACACATAGTTTTAAGCAGAGGGAATAAGAGCAACATTGTTTTCTTCTTCA-TTTTCG 1188
Query 1079 GTGATTGAGAGAGGCCACGA-CTTGGTCGAATATTGTTTTCAGAATAGAGAGTCAGTTTT 1137
||||||||||||||||| || |||||||||||||||||||| ||||||||| ||||||||
Sbjct 1189 GTGATTGAGAGAGGCCA-GAACTTGGTCGAATATTGTTTTCGGAATAGAGATTCAGTTTT 1247
Query 1138 CAAGTAAAACTGTGAAATAAAATTTCTGTGGATTTCTCATATTTTGGCTGTACCATTCCA 1197
| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct 1248 CGAGTAAAACTGTGAAATAAAATTTCTGTGGATTGCTCATATATTGGCTGTACCAT-CCA 1306
Query 1198 ACATTTATCAAAAATCATACATTTT-CTCCCTTTCTTTCC 1236
||||||||||||||||||||||||| |||| |||||||||
Sbjct 1307 ACATTTATCAAAAATCATACATTTTTCTCC-TTTCTTTCC 1345
> AT3G54120.1 | Symbols: | Reticulon family protein | chr3:20041126-20042340
REVERSE LENGTH=962
Length=962
Score = 130 bits (70), Expect = 3e-29
Identities = 82/87 (94%), Gaps = 3/87 (3%)
Strand=Plus/Minus
Query 1151 GAAATAAAATTTCTGTGGATTTCTCATATTTTGGCTGTACCATTCCAACATTTATCAAAA 1210
||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 962 GAAATAAAATTTCTGTGGATTGCTCATATATTGGCTGTACCA-TCCAACATTTATCAAAA 904
Query 1211 ATCATACATTTT-CTCCCTTTCTTTCC 1236
|||||||||||| |||| |||||||||
Sbjct 903 ATCATACATTTTTCTCC-TTTCTTTCC 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5