BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485810
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54130.1 | Symbols: | Josephin family protein | chr3:200427... 1530 0.0
> AT3G54130.1 | Symbols: | Josephin family protein | chr3:20042705-20044526
REVERSE LENGTH=1130
Length=1130
Score = 1530 bits (828), Expect = 0.0
Identities = 1046/1144 (91%), Gaps = 43/1144 (4%)
Strand=Plus/Plus
Query 1 CTTCGCTTCACAATCTC-TTGAGACTTTCGCATCGGAGC---AAT-A-A-A-TCAGT-G- 50
||||||||||||||||| |||||||||| |||||||||| ||| | | | ||| | |
Sbjct 1 CTTCGCTTCACAATCTCTTTGAGACTTTTGCATCGGAGCAATAATAATATATTCA-TCGC 59
Query 51 AATTTTAG-G-GTTTTGTTA-TCAAATCTTAATCGGCGATGGAACGAACGAGCAACGGAG 107
|| | || | ||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 60 AAAATCAGTGAATTTTGATATTCAAATCTTAATCGGCGATGGAACGAACAAGCAACGGAG 119
Query 108 GAATGTTGTATCACGAGGTTCAAGAGTCAAATCTGTGCGCCGTACACTGCGTCAACACGG 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAATGTTGTATCACGAGGTTCAAGAGTCAAATCTGTGCGCCGTACACTGCGTCAACACGG 179
Query 168 TGTTGCAAGGACCTTTCTTCTCCGAATTCGATTTAGCTGCCGTCGCCGCCGATCTCGACG 227
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 180 TGTTGCAAGGGCCTTTCTTCTCTGAATTCGATTTGGCTGCCGTCGCCGCCGATCTAGACG 239
Query 228 GGAAGGAGCGTCAGGTTATGCTTGAAGGCGCTGCCGTCGGAGGGTTTGCGCCCGGCGATT 287
|||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 240 GGAAGGAGCGTCAGGTTATGCTTGAAGGTGCTGCCGTTGGAGGTTTTGCTCCCGGCGATT 299
Query 288 TCTTAGCTGAAGAGTCACACAATGTTTCCCTTGGCGGCGATTTTAGTATCCAGGTCTTGC 347
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 TCTTAGCTGAAGAGTCGCACAATGTTTCCCTCGGCGGCGATTTTAGTATCCAGGTCTTGC 359
Query 348 AAAAAGCTTTGGAAGTGTGGGATCTACAAGTGATTCCACTCAATTGTCCAGACGCAGAGC 407
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 360 AAAAAGCTTTGGAAGTGTGGGATCTACAAGTAATTCCACTCAATTGTCCAGATGCAGAGC 419
Query 408 CTGCTCAGATAGACCCTGAGCTTGAAAGCGCCTTCATCTGCCACTTGCATGACCATTGGT 467
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 CTGCGCAGATAGACCCTGAGCTTGAAAGCGCCTTTATCTGCCACTTGCATGACCATTGGT 479
Query 468 TTTGCATAAGGAAAGTGAATGGCGAATGGTATAACTTTGACAGCCTCCTCGCTGCCCCGC 527
|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 480 TTTGTATAAGGAAAGTGAATGGCGAATGGTATAACTTTGATAGTCTCCTTGCTGCCCCGC 539
Query 528 AACATTTATCGAAGTTCTACCTTTCCGCGTTTCTC-GACTCTCTCAAAGGCTCAGGATGG 586
||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||
Sbjct 540 AACATTTATCGAAGTTCTACCTTTCTGCGTT-CTTAGACTCTCTCAAAGGCGCAGGATGG 598
Query 587 AGTATCTTCATAGTGAAAGGAAACTTCCCACAGGAGTGTCCCATGTCGTCTTCATCTGAA 646
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 599 AGTATCTTCATAGTGAAAGGAAACTTCCCTCAGGAATGTCCCATGTCGTCTTCTTCTGAA 658
Query 647 GCTTCCAATAGTTTCGGACAGTGGCTTTCTCCTGAAGACGCAGAGAGAATAATAAAGAGC 706
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 659 GCTTCCAATAGTTTCGGGCAGTGGCTTTCTCCTGAAGACGCAGAGAGAATAAGAAAGAAC 718
Query 707 ACGAGCTCCTCAGTACGAGGTTCTTCTGCTAGAAACAACAGAAGTAATGACAATATTGAT 766
|||||||| || | ||||||||| |||||||| ||||||||||||||| || ||
Sbjct 719 ACGAGCTC---AG---G---TTCTTCTGCCAGAAACAAGAGAAGTAATGACAATGTTAAT 769
Query 767 CAACAAAGACCAAATCAGGCATTGTCACGTGAGGAAGTGCAGGCTTTTTCAGAGATGGAA 826
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CAACAAAGACGGAATCAGGCATTGTCACGTGAGGAAGTGCAGGCTTTTTCAGAGATGGAA 829
Query 827 GATGATGACTTGAAGGCAGCAATTGCGGCGAGTTTGCTTGATGCTTCTGCGGCTGGGGCC 886
|||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||
Sbjct 830 GATGATGACTTGAAGGCAGCAATTGCAGCAAGTTTGCTTGATGCTTCTGCTGCTGAGGCC 889
Query 887 AATCTCGGCGATATGGGGACTTCTCAAAAGGAAACTGAGAAAGAAAAGTAGCAGATAAAA 946
|||||||| | | |||| |||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 890 AATCTCGGAGCTGTGGGCACTTCTGAAAAGGAAACTGAGAAACAAAAGTAGCAGAGAAAA 949
Query 947 TAGAGAACAAGTCTTATTGATGGAGGTGG-GAAATATTCACTTTTGTTTCTTTGTTTTGG 1005
|||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 950 TAGAGAACAAGTGTTATTGATGGAGGTGGTGGGATATTCACTTTTGTTTCTTTGTTTTGG 1009
Query 1006 TTTGTTATCAA-------CAA---TTTTACATacagaacagagaaaagaaagaaaaggct 1055
||||||||||| ||| |||||||||||||||||||||| |||| ||| | ||
Sbjct 1010 TTTGTTATCAAGAGTTATCAACAATTTTACATACAGAACAGAGAAA-GAAA-AAA-G-CT 1065
Query 1056 tacatcgaaagatagagaaaacagagaaTAATAAATGGTTTGTG-AATTGTTTTTGTTTG 1114
|||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1066 TACATCGAAAGATAGA-AAA-CAGAGGATAATAAATGGTTTGTGGAATTGTTTTTGTTTG 1123
Query 1115 ATTT 1118
||||
Sbjct 1124 ATTT 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5