BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485811
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54140.1 | Symbols: ATPTR1, PTR1 | peptide transporter 1 | c... 2874 0.0
> AT3G54140.1 | Symbols: ATPTR1, PTR1 | peptide transporter 1 |
chr3:20045663-20048572 REVERSE LENGTH=2064
Length=2064
Score = 2874 bits (1556), Expect = 0.0
Identities = 1774/1878 (94%), Gaps = 20/1878 (1%)
Strand=Plus/Plus
Query 1 GAATATGGAAGAAAAAGATGTGTATACGCAAGATGGAACTGTTGATATTCACAAAAATCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 GAATATGGAAGAAAAAGATGTGTATACGCAAGATGGAACTGTTGATATTCACAAAAATCC 185
Query 61 TGCAAACAAGGAGAAAACTGGAAATTGGAAAGCTTGCCGCTTTATTCTCGGAAATGAGTG 120
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 186 TGCAAACAAGGAGAAAACCGGAAATTGGAAAGCTTGCCGCTTCATTCTCGGAAATGAGTG 245
Query 121 CTGTGAAAGATTGGCTTACTATGGCATGGGCACTAACCTTGTGAATTATCTTGAGAGTCG 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 246 CTGTGAAAGATTGGCCTACTATGGCATGGGCACTAACCTTGTGAATTATCTTGAGAGCCG 305
Query 181 TTTGAATCAAGGCAATGCTACAGCTGCAAATAATGTCACGAATTGGTCTGGAACATGTTA 240
| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 306 TCTGAATCAAGGCAATGCTACGGCTGCAAATAACGTCACGAATTGGTCTGGAACATGTTA 365
Query 241 TATTACTCCTTTGATTGGAGCCTTTATAGCTGATGCTTACCTTGGACGATATTGGACTAT 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TATAACTCCTTTGATTGGAGCCTTTATAGCTGATGCTTACCTTGGACGATATTGGACTAT 425
Query 301 TGCAACCTTTGTTTTCATCTATGTCTCCGGTATGACTCTTTTGACATTATCAGCTTCAGT 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TGCAACTTTTGTTTTCATCTATGTCTCCGGTATGACTCTTTTGACATTATCAGCTTCAGT 485
Query 361 TCCTGGACTTAAACCAGGTAACTGCAATGCGGATACTTGTCACCCGAATTCGGGTCAGAC 420
|||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||
Sbjct 486 TCCTGGACTTAAACCAGGTAACTGCAATGCTGATACTTGTCATCCAAATTCTAGTCAGAC 545
Query 421 GGCTGTTTTCTTTGTTGCGCTTTATATGATTGCGCTTGGTACTGGCGGTATAAAGCCGTG 480
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 546 TGCTGTTTTCTTTGTCGCGCTTTATATGATTGCTCTTGGAACTGGCGGTATAAAGCCGTG 605
Query 481 TGTTTCGTCCTTTGGAGCGGATCAGTTTGATGAGAATGATGAGGCTGAAAAGATCAAGAA 540
|||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||
Sbjct 606 TGTTTCGTCCTTTGGAGCTGATCAGTTTGATGAGAATGATGAGAATGAGAAGATCAAGAA 665
Query 541 AAGTTCTTTCTTCAACTGGTTTTACTTCTCCATTAATGTTGGAGCTCTCATTGCTGCAAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AAGTTCTTTCTTCAACTGGTTTTACTTCTCCATTAATGTTGGAGCTCTCATTGCTGCAAC 725
Query 601 TGTTCTTGTCTGGATACAAATGAACGTTGGTTGGGGGTGGGGTTTCGGTGTTCCGACAGT 660
|||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 726 TGTTCTCGTCTGGATACAAATGAATGTTGGTTGGGGATGGGGTTTCGGTGTTCCAACAGT 785
Query 661 CGCGATAGTTATCGCGGTTTGCTTTTTCTTCTTGGGAAGCCGTTTTTACAGACTTCAGAG 720
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 786 CGCGATGGTTATCGCGGTTTGCTTTTTCTTCTTCGGAAGCCGTTTTTACAGACTTCAGAG 845
Query 721 ACCTGGAGGGAGTCCGCTTAC-ACGGATCTTTCAGGTTATAGTAGCGGCTTTTCGGAAGA 779
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 846 ACCTGGAGGGAGTCCACTTACTA-GGATCTTTCAGGTTATAGTAGCGGCTTTTCGGAAGA 904
Query 780 TGCGTGTTAAGGTTCCAGAGGATAAGTCTCTGCTCTTCGAAACCGCAGATGATGAGAGCA 839
| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |
Sbjct 905 TAAGTGTTAAGGTTCCAGAGGACAAGTCTCTGCTCTTTGAAACTGCAGATGATGAGAGTA 964
Query 840 ATATCAAAGGTAGCCGGAAACTTGTGCACACAGATAACTTAAAGTTTTTCGACAAGGCAG 899
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 965 ACATCAAAGGTAGCCGGAAACTTGTGCACACAGATAACTTAAAGTTTTTTGACAAGGCAG 1024
Query 900 CGGTTGAGAGTCAATCTGATAGCATCAAAGACGGGGAAGTGAATCCGTGGAGACTCTGTT 959
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1025 CGGTTGAGAGTCAATCTGATAGCATCAAAGACGGGGAAGTCAATCCATGGAGACTATGTT 1084
Query 960 CTGTTACTCAAGTTGAAGAACTTAAGTCCATAATCTCACTTCTTCCAGTTTGGGCCACGG 1019
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct 1085 CTGTTACTCAAGTTGAAGAACTTAAGTCAATAATCACACTTCTTCCAGTTTGGGCCACAG 1144
Query 1020 GAATAGTCTTCGCCACAGTGTACAGCCAAATGAACACAATGTTTGTCTTACAAGGAAACA 1079
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1145 GAATAGTCTTCGCCACAGTGTACAGCCAAATGAGCACAATGTTTGTGTTACAAGGAAACA 1204
Query 1080 CAATGGACCAACACATGGGGAAAAACTTTGAAATCCCATCAGCTTCACTTTCACTTTTCG 1139
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1205 CAATGGACCAACACATGGGAAAAAACTTTGAAATCCCATCAGCTTCACTCTCACTTTTCG 1264
Query 1140 ACACGGTAAGCATACTCTTCTGGACTCCCGTCTATGATCAGTTCATTATCCCGTTGGCAA 1199
|||| || || |||||||||||||||| |||||||| ||||||||||||||| ||||||
Sbjct 1265 ACACTGTCAGTGTACTCTTCTGGACTCCTGTCTATGACCAGTTCATTATCCCGCTGGCAA 1324
Query 1200 GAAAGTTCACACGCAATGAACGAGGCTTCACTCAGCTTCAACGTATGGGTATAGGTCTTG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GAAAGTTCACACGCAATGAACGAGGCTTCACTCAGCTTCAACGTATGGGTATAGGTCTTG 1384
Query 1260 TGGTCTCCATCTTTGCCATGATCACTGCAGGAGTCTTGGAGGTTGTCAGGCTTGATTATG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TGGTCTCCATCTTTGCCATGATCACTGCAGGAGTCTTGGAGGTTGTCAGGCTTGATTATG 1444
Query 1320 TCAAAAGTCACAATGCATATGACCaaaaaaaGATCCCA-ATGACCATTTTTTGGCAAATC 1378
|||||| |||||||||||||||||||||| |||||| | ||| | || || ||||| ||
Sbjct 1445 TCAAAACTCACAATGCATATGACCAAAAACAGATCC-ATATGTCGATATTCTGGCAGATA 1503
Query 1379 CCGCAGTATTTACTTATTGGTTGTGCAGAAGTTTTCACCTTTATAGGTCAGCTTGAGTTT 1438
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 CCGCAGTATTTACTTATCGGTTGTGCAGAAGTTTTCACCTTTATAGGTCAGCTTGAGTTT 1563
Query 1439 TTCTATGATCAGGCTCCTGATGCCATGAGAAGTCTTTGCTCTGCTTTGTCATTGACCACG 1498
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1564 TTCTATGATCAGGCTCCTGATGCCATGAGAAGTCTCTGCTCTGCTTTGTCGTTGACCACG 1623
Query 1499 GTTGCGTTGGGGAACTACTTAAGCACGGTCCTTGTGACGGTTGTGATGAA-ATTAACGAG 1557
||||||||||||||||| || ||||| || |||||||||||||||||||| || |||||
Sbjct 1624 GTTGCGTTGGGGAACTATTTGAGCACAGTTCTTGTGACGGTTGTGATGAAGAT-AACGAA 1682
Query 1558 GAAGAACGGTAAACCCGGTTGGATACCGGATAACTTGAACAGAGGCCATCTTGATTACTT 1617
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1683 GAAGAACGGTAAACCGGGTTGGATACCGGATAACTTGAACCGAGGCCATCTTGATTACTT 1742
Query 1618 TTTCTACTTGTTGGCAACTCTCAGTTTCCTCAACTTCTTAGTGTACCTCTGGATTTCAAA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 TTTCTACTTGTTGGCAACTCTCAGTTTCCTCAACTTCTTAGTGTACCTCTGGATTTCAAA 1802
Query 1678 ACGCTACAAATACAAGAAAGCTGTGGGTCGAGCACATTGATGAAGAATCTGGTGTCAAAG 1737
|||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||
Sbjct 1803 ACGCTACAAATACAAGAAAGCTGTTGGTCGAGCACATTGATCAAGAAACTGGTGTGGAAG 1862
Query 1738 AGATTTGGAGTTAAAAATGCTTGTTTAGCTTTGGTTTGGTAAGTGTTTTGCTTGTAAATG 1797
| |||||||||||| | | | | |||| |||| ||||||||||||||||||||
Sbjct 1863 ATATTTGGAGTTAACA--G-T-----A--TTTG-TTTGAAAAGTGTTTTGCTTGTAAATG 1911
Query 1798 TTTATA-TATGTGGTCTAGTTGTTGTTGGTGAT-TTAGGTTGGTTTTGGTTTTGCTTATG 1855
||| | |||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 1912 TTTTTTGTATGTGGTCTAGTTGTTGTTGGTG-TGTTAGGTTTGTTTTGGTTTTGCTTATG 1970
Query 1856 TATTTCTGAATACTTCCA 1873
||||||||||||||||||
Sbjct 1971 TATTTCTGAATACTTCCA 1988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92720406615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5