BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485812
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54150.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1415 0.0
> AT3G54150.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:20050644-20052815
REVERSE LENGTH=1203
Length=1203
Score = 1415 bits (766), Expect = 0.0
Identities = 932/1010 (92%), Gaps = 20/1010 (2%)
Strand=Plus/Plus
Query 1 GAGTTTAAATATAAAACG-A--AGTTGAGTATTCAAACCAAGGAAAGAAGAA-GAGAGCG 56
||||||||||| |||||| | ||||| ||||||||||||||||||||| || ||||| |
Sbjct 1 GAGTTTAAATAGAAAACGAATTAGTTGTGTATTCAAACCAAGGAAAGAA-AACGAGAGAG 59
Query 57 G-A---AGAAGAAAATGGCTGCCTTATCAGAGAAAGAGGCTGAAGCTTATCTCGACGCAA 112
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTACGTAGAAGAAAATGGCTGCCTTATCAGAGAAAGAGGCTGAAGCTTATCTCGACGCAA 119
Query 113 GGCCTAGATATCCGATTGATTGGTATAAGAAGATTGCCGCACGGACACTTGACCACAAAT 172
|||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 120 GGCCTAGATATCCGATCGATTGGTTTAAGAAAATTGCCGCACGGACACAGGACCACAAAT 179
Query 173 TTGCTTGGGATGTTGGAACTGGTAACGGTCAGGCTGCTATTGGGCTTGTAGAACATTACG 232
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 180 TTGCTTGGGATGTTGGAACTGGTAATGGTCAGGCTGCTATTGGGCTTGTGGAGCATTACG 239
Query 233 AGAATGTTGTGGCTACCGATATAAACGAAGCACAACTTAAACGAGCAATCAAACACTCAA 292
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 240 AGAATGTAGTGGCTACCGATATAAACGAAGCACAACTTCAACGAGCAATCAAACACTCAA 299
Query 293 GAATCAATTACCATCACACTCCAATAACGATATCAGAAGATGAGATGGTGGCTCTAGTCG 352
|||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 300 GAATCAGTTACCATCACACTCCAACAACGATATCAGAAGATGAGATGGTGGATCTACTCG 359
Query 353 GGGGAGAAAACTCTGTCGATCTCATAGTTGCTGCTCAAGCTGTCCATTTTTTCGACCTCA 412
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 GGGGAGAAAACTCCGTGGATCTCATAGTTGCTGCTCAAGCTGTCCATTTCTTCGACCTCA 419
Query 413 CCACATTTTACAATGTTGCGAAACGTGTTCTTCGTAAAGAAGGAGGCCTAATCGCCGTAT 472
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 420 ACGTATTTTACAATGTTGCAAAACGTGTTCTTCGTAAAGAAGGAGGCCTAATCGCCGTTT 479
Query 473 GGGTATACAATGACATCATTATCTCACCTGAGATCGATCCCATAATGAAGCGCCTTGTGG 532
|||||||||| || ||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 480 GGGTATACAACGATATCATTATCTCGCATGAGATCGATCCCATAATGAAGCGCCTTGTCG 539
Query 533 ACTCTACTCTATCTTTTAGAACTCCTATTATGAATTTAGCATTTGACGGTTATAAAACGT 592
||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 540 ACTCTACTCTACCTTTTAGAACTCCTATTATGAATTTAGCATTTGACGGTTACAAGACAT 599
Query 593 TGCCGTTTCCTTTTGAGACCATAGGGATGGGGTCCGAAGGAAAGCCTATTACTCTAGACA 652
|| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 TGACATTTCCTTTTGAGACCATAGGGATGGGTTCCGAAGGAAAGCCTATTACTCTAGACA 659
Query 653 TTCCACATAAACTTTCTCTTAAAGGGTTTATAGGGTTCTTGAGATCGTGGCAGCCCGCGA 712
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTCCGCATAAACTTTCGCTTAAAGGGTTTATAGGGTTCTTGAGATCGTGGCAGCCCGCGA 719
Query 713 TGAAAGCCAAGGAAAAAGGAGTGGAGCTTATAAATGAAGATCTAATAACCAAATTTGAGG 772
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 TGAAGGCTAAGGAAAAAGGAGTAGAGCTTATAAATGAAGATCTAATAACCAAATTTGAGG 779
Query 773 AGGCTTGGGGTGATAAAAACCAAGTTAAAGATGTTTTCTACAAGGCTCACATGATTGTTG 832
|||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 AGGCTTGGGGTGATGAAACCCAAGTGAAAGATGTTTTCTACAAGGCTCACATGATTGTTG 839
Query 833 GAAAATTTCCGGAAGTAAAAGTCGAATCTGATCAAGTACTGTCCCAAGACAG-TAACAAA 891
||||| ||||||||| |||| |||||||||||||||||||||| || | || | |
Sbjct 840 GAAAAATTCCGGAAGAAAAATTCGAATCTGATCAAGTACTGTCT-AACAAAGGT--C--- 893
Query 892 GGTCTCTTGCTAGAAACGGAGGTTGGGAGAAAACACAAAAGAAGACAACCATCAGATGAA 951
| ||||||||| |||||||||||||||||||| || |||||| ||||||||| ||||||
Sbjct 894 G-TCTCTTGCTTGAAACGGAGGTTGGGAGAAACCAGAAAAGACCACAACCATCCGATGAA 952
Query 952 GGAGACAGTGGACAAAGTAAGAAACAAAATACAAGTGAAGATGAGGCATG 1001
|||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 953 GGAGACAG---ACAAAGTAAGAAACAAAATACAAGTGAAGATGACGCATG 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5