BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485815
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54180.1 | Symbols: CDC2B, CDKB1;1 | cyclin-dependent kinase... 1688 0.0
AT2G38620.2 | Symbols: CDKB1;2 | cyclin-dependent kinase B1;2 |... 983 0.0
> AT3G54180.1 | Symbols: CDC2B, CDKB1;1 | cyclin-dependent kinase
B1;1 | chr3:20059796-20061438 FORWARD LENGTH=1204
Length=1204
Score = 1688 bits (914), Expect = 0.0
Identities = 985/1020 (97%), Gaps = 2/1020 (0%)
Strand=Plus/Plus
Query 1 CATCATCTCCATTAATCTGATCAAAAAATAGGGTTCATCAAAAATCCAGAAACCGTCACA 60
|||||||| |||||||||||||||| ||||||||| ||||||| |||||||||| ||||
Sbjct 1 CATCATCTTCATTAATCTGATCAAATAATAGGGTTAATCAAAAGTCCAGAAACCAACACA 60
Query 61 GTTCAAtttttttCAAAAAATCTCAGAAATGGAGAAATACGAGAAGCTAGAGAAGGTCGG 120
|||||| |||| | ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GTTCAA--TTTTACGAAACCTCTCAGAAATGGAGAAGTACGAGAAGCTAGAGAAGGTCGG 118
Query 121 CGAAGGAACATACGGGAAAGTCTACAAAGCGATGGAGAAAGGAACTGGTAAGCTTGTAGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 AGAAGGAACATACGGGAAAGTCTACAAAGCGATGGAGAAAGGAACTGGTAAGCTTGTTGC 178
Query 181 TCTGAAGAAAACTCGTCTCGAGATGGACGAAGAAGGTATTCCACCAACTGCTCTTCGTGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCTGAAGAAAACTCGTCTCGAGATGGACGAAGAAGGTATTCCACCAACTGCTCTTCGTGA 238
Query 241 GATCTCGCTTCTCCAAATGTTATCAACATCGATCTATGTTGTTCGATTACTCTGCGTCGA 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GATCTCGCTTCTCCAGATGTTATCAACATCGATCTATGTTGTTCGATTACTCTGCGTCGA 298
Query 301 ACATGTTCATCAACCATCTACCAAATCTCAATCTACCAAATCGAATCTCTATCTCGTTTT 360
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 ACATGTTCATCAACCATCAACCAAATCTCAATCTACCAAATCCAATCTCTATCTCGTTTT 358
Query 361 CGAGTATCTTGATACTGATCTCAAGAAATTCATCGATTCGTATCGGAAAGGACCTAATCC 420
||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 359 CGAGTATCTCGATACTGATCTTAAGAAATTCATCGATTCGTATAGGAAAGGACCTAATCC 418
Query 421 TAAGCCTCTTGAGCCTTTTTTGATTCAGAAGTTGATGTTTCAGCTTTGTAAAGGCGTTGC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 TAAGCCTCTTGAGCCTTTTTTGATTCAGAAGTTGATGTTTCAGCTTTGTAAAGGTGTTGC 478
Query 481 GCATTGTCATAGTCACGGTGTGCTTCACCGTGATCTTAAACCGCAGAATCTTCTTCTTGT 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 479 GCATTGTCATAGTCATGGTGTGCTTCACCGTGATCTTAAACCGCAGAATCTTCTTCTGGT 538
Query 541 GAAAGATAAAGAGCTTCTTAAGATTGCTGATTTGGGTCTTGGTCGTGCTTTTACTGTTCC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAAAGATAAAGAGCTTCTTAAGATTGCTGATTTGGGTCTTGGTCGTGCTTTTACTGTTCC 598
Query 601 TCTTAAGTCTTATACGCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTCTTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTTAAGTCTTATACGCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTCTTCT 658
Query 661 TGGATCTACTCATTATTCAACTGGTGTTGATATGTGGTCTGTTGGTTGCATCTTTGCTGA 720
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 659 TGGATCTACTCATTATTCAACTGGTGTTGACATGTGGTCTGTTGGTTGTATCTTTGCTGA 718
Query 721 GATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAATTGCTTCATAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAATTGCTTCATAT 778
Query 781 CTTCAGATTGCTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTGTCCACTCTGCGTGA 840
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 779 CTTCAGGTTGCTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTTTCCACACTGCGTGA 838
Query 841 CTGGCATGTTTACCCGAAGTGGGAGCCGCAAGACTTAACTCTTGCTGTTCCTTCTCTTTC 900
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CTGGCATGTTTACCCTAAGTGGGAGCCGCAAGACTTAACTCTTGCTGTTCCTTCTCTTTC 898
Query 901 ACCTGAAGGAGTTGATCTTCTCATGAAACTGCTCAAGTACAATCCAGCCGAGAGAATTTC 960
|||| |||||||||||||||||| |||| |||||||||||||||||||||| ||||||||
Sbjct 899 ACCTCAAGGAGTTGATCTTCTCACGAAAATGCTCAAGTACAATCCAGCCGAAAGAATTTC 958
Query 961 AGCAAAAACAGCACTTGATCACCCTTATTTTGACAGCCTTGACAAGTCTCAGTTCTGAAG 1020
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 959 AGCAAAAACAGCACTTGATCACCCATATTTTGACAGCCTTGACAAGTCTCAGTTCTGAAG 1018
> AT2G38620.2 | Symbols: CDKB1;2 | cyclin-dependent kinase B1;2
| chr2:16152532-16154086 FORWARD LENGTH=1175
Length=1175
Score = 983 bits (532), Expect = 0.0
Identities = 817/951 (86%), Gaps = 34/951 (4%)
Strand=Plus/Plus
Query 88 AATGGAGAAATACGAGAAGCTAGAGAAGGTCGGCGAAGGAACATACGGGAAAGTCTACAA 147
||||||||||||||||||||| || |||||||| |||||||| || || |||||||||||
Sbjct 19 AATGGAGAAATACGAGAAGCTCGAAAAGGTCGGTGAAGGAACCTATGGAAAAGTCTACAA 78
Query 148 AGCGATGGAGAAAGGAACTGGTAAGCTTGTAGCTCTGAAGAAAACTCGTCTCGAGATGGA 207
||| ||||||||| || || || || || ||||||||||||||| | ||||| |||||
Sbjct 79 AGCAATGGAGAAAACCACCGGAAAACTCGTCGCTCTGAAGAAAACTAGGCTCGAAATGGA 138
Query 208 CGAAGAAGGTATTCCACCAACTGCTCTTCGTGAGATCTCGCTTCTCCAAATG--TTATCA 265
|||||||||||| |||||||| ||||| ||||||||||| |||||||||||| || ||
Sbjct 139 CGAAGAAGGTATACCACCAACGGCTCTCCGTGAGATCTCTCTTCTCCAAATGCTTTCTC- 197
Query 266 ACATCGATCTATGTTGTTCGAT-TACTCTGCGTCGAACATG---TTC-ATC-AACCA-TC 318
| ||| ||||| | ||||| | | |||||||||||||||| ||| ||| || | ||
Sbjct 198 A-ATCAATCTACATCGTTCG-TCTCCTCTGCGTCGAACATGTTATTCAATCGAAAGATTC 255
Query 319 TACCAAATCTCAATCTACCAAATCGAATCTCTATCTCGTTTTCGAGTATCTTGATACTGA 378
|| ||||| ||| ||||||| ||||||||||||||||| |||||||| || |||||
Sbjct 256 GACTGTTTCTCACTCTCCCAAATCCAATCTCTATCTCGTTTTTGAGTATCTCGACACTGA 315
Query 379 TCTCAAGAAATTCATCGATTCGT-ATCGGAAAGGAC-CTAATCCTAAG-CCTCTTGAGCC 435
|||||||||||| || ||||| | || |||||| | | |||||| || || |||||| |
Sbjct 316 TCTCAAGAAATTTATAGATTC-TCAT-AGAAAGGGCTCGAATCCT-AGACCGCTTGAGGC 372
Query 436 TT-TTTTGATTCAGAAGTTGATGTTTCAGCTTTGTAAAGGCGTTGCGCATTGTCATAGTC 494
|| | ||| | |||| ||| ||||||||||||| |||||| || || ||||||||||| |
Sbjct 373 TTCTCTTG-TGCAGAGGTTTATGTTTCAGCTTTTTAAAGGTGTGGCTCATTGTCATAGCC 431
Query 495 ACGGTGTGCTTCACCGTGATCTTAAACCGCAGAATCTTCTTCTTGTGA-AA-GATAAAGA 552
| ||||||||||||||||||||||||||||||||||||| | ||| || || |||||||
Sbjct 432 ATGGTGTGCTTCACCGTGATCTTAAACCGCAGAATCTTC-TATTG-GATAAGGATAAAGG 489
Query 553 GCTTCTTAAGATTGCTGATTTGGGTCTTGGTCGTGCTTTTACTGTTCCTCTTAAGTCTTA 612
| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 490 GATTCTTAAGATTGCTGATTTGGGTCTTAGTCGTGCTTTTACTGTGCCTCTTAAGGCTTA 549
Query 613 TACGCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTCTT-CTTGGATCTACTC 671
||| ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 550 TACACATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTT-TTGCTTGGTTCTACTC 608
Query 672 ATTATTCAACTGGTGTTGATATGTGGTCTGTTGGTTGCATCTTTGCTGAGATGGTTCGGA 731
|||| || |||| ||||||||| ||||||||||| ||||||||||| |||||| || |||
Sbjct 609 ATTACTCTACTGCTGTTGATATTTGGTCTGTTGGATGCATCTTTGCCGAGATGATTAGGA 668
Query 732 GGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAATTGCTTCATATCTTCAGATTGC 791
|||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 669 GGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAACTACTTCATATTTTCAGATTGT 728
Query 792 TAGGAACACCAACTGAGCAGCAATGGCCGGGTGTG-TC-CACTCTGCGTGACTGGCATGT 849
|||||||||||||||||||||||||||||||||| | || | ||||||||||||||||
Sbjct 729 TAGGAACACCAACTGAGCAGCAATGGCCGGGTGTAATGGCA-T-TGCGTGACTGGCATGT 786
Query 850 TTACCCGAAGTGGGAGCCGCAAGACTTAACTCTTGCTGTTCCTTCTCTTTCACCTGAAGG 909
|| || ||||||||||||||||||||| | | ||||||||| ||||| || ||||||||
Sbjct 787 CTATCCAAAGTGGGAGCCGCAAGACTTATCACGTGCTGTTCCATCTCTATCTCCTGAAGG 846
Query 910 AGTTGATCTTCTCATG-AAACTGCTCAAGTACAATCCAGCCGAGAGAATTTCAGCAAAAA 968
| |||||||||||| | ||| || | |||||||||||||| || |||||||||||||||
Sbjct 847 AATTGATCTTCTCACGCAAA-TGTTGAAGTACAATCCAGCAGAAAGAATTTCAGCAAAAG 905
Query 969 CAGCACTTGATCA-CCCTTATTTTGACAGCCTTGACAAGTCTCAGTTCTGA 1018
|||| || ||||| |||| | ||||||||||||||||| ||||||||||||
Sbjct 906 CAGCTCTCGATCATCCCT-ACTTTGACAGCCTTGACAAATCTCAGTTCTGA 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5