BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485817
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54200.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1099 0.0
> AT3G54200.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:20065665-20066560
FORWARD LENGTH=896
Length=896
Score = 1099 bits (595), Expect = 0.0
Identities = 771/852 (90%), Gaps = 28/852 (3%)
Strand=Plus/Plus
Query 1 AAAACAAAACCCCGGAGAAACTCAACAGCGAGAGAACCACAAAGCGTAAGAAAGTGAG-- 58
||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1 AAACCAAAACCCCTGAGAAACTCAACAGCGAGAGAACCACAAAGCGTAACAAAGAGAGTA 60
Query 59 -----TATGAGTGGTTTTTCAATCAAATCCGATGATAAAAAGG-A-A-GAGAAGCCAGCA 110
|||||||| ||||||||||||| ||||||||||||||| | | ||||||||||||
Sbjct 61 ATAACTATGAGTGATTTTTCAATCAAACCCGATGATAAAAAGGAAGAGGAGAAGCCAGCA 120
Query 111 AGAGCCATGTTAGCAGCAGCACCCAAGCCAAACGCTTCTTCCATGGAAACGCAATCTGCT 170
| |||||||||| | || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 ACAGCCATGTTA-C--CACCACCCAAACCAAACGCTTCTTCCATGGAAACGCAATCTGCT 177
Query 171 AACGGCGGAGGCGGTAAAAAAGTGCGACGGAAACGCAACTGCAAAATCTGTATCTGTTTC 230
||| |||| || ||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 178 AACACCGGAACCGCTAAAAAACTGCGGCGGAAACGCAACTGCAAAATCTGTATCTGTTTC 237
Query 231 ACTATCC-TCTTGC-TTCTCCTCATCTTTGTAGCTATCCTCATCTTATCTTTCACTCTCT 288
||||||| || | | ||||||| ||| ||| |||| |||||||| ||||||||||||
Sbjct 238 ACTATCCTTC-T-CATTCTCCTAATCGCCATAGTTATCGTCATCTTAGCTTTCACTCTCT 295
Query 289 TCAAACCAAAACGCCCAATC-ACAACCATCGATTCCGTAACCGTTGATCGTCTCCGAGCT 347
|||||||||||||||||| | || || ||||||||||| |||||||||||||||| ||||
Sbjct 296 TCAAACCAAAACGCCCAA-CTACTACAATCGATTCCGTCACCGTTGATCGTCTCCAAGCT 354
Query 348 TCCGTCAATCCTCTCCTTCTCCAAGTCATCCTAAACCTAACGCTCAACGTCGATCTCTCT 407
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 355 TCCGTCAATCCTCTCCTTCTCAAAGTCCTCCTAAACCTAACGCTCAACGTCGATCTCTCT 414
Query 408 CTGAAAAACCCTAACCGCGTCGGGTTTAGCTACGATTCTTCGTCGGCGTTGTTGAATTAC 467
|| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 CTCAAAAACCCTAACCGCATCGGGTTTAGCTACGATTCGTCGTCGGCGTTGTTGAATTAC 474
Query 468 AGAGGCCAATTGATCGGTGAAGCTCCTCTTCCGGCGAACCGAATCGCGGCGCGGGAAACG 527
||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 475 AGAGGCCAAGTGATCGGTGAAGCTCCTCTTCCGGCTAACCGAATCGCGGCGCGGAAAACG 534
Query 528 GTGCCGTTGAATTTAACGTTGACGCTAATGGCGGATCGGTTACTCTCTGAATCGCAGCTT 587
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 535 GTGCCGTTGAATATAACGTTGACGCTAATGGCGGATCGGTTACTCTCTGAAACGCAGCTT 594
Query 588 TTATCTGACGTCATGGCTGGCGTCATTCCGCTCAACACTTTTGTTAAGGTCTCTGGTAAA 647
|||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||
Sbjct 595 TTATCTGACGTCATGGCTGGCGTCATTCCGCTTAATACTTTTGTTAAAGTCACTGGTAAA 654
Query 648 GTAACTGTTCTTAAAGTCTTCAAGATTAAAGTCCAAGCGTCTTCTTCGTGTGATCTAACC 707
||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 655 GTAACCGTTCTTAAAATCTTTAAGATTAAAGTCCAATCGTCTTCTTCGTGTGATCTCAGT 714
Query 708 ATCTCTGTTTCGGATCGTAATGTTACGAGTCAACACTGTAAGTATTCGACTAAGTTATAA 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATCTCTGTTTCGGATCGTAATGTTACGAGTCAACACTGTAAGTATTCGACTAAGTTATAA 774
Query 768 ACAGATCATTCTAG-TAC-A--ACACTTTGTCTTCTTGTTTTGTTTTT-GGTATTTTAAT 822
|||||| | ||| | | | ||||||||| | |||||||||||||| ||||||| |||
Sbjct 775 TCAGATC-TG-TAGATTCTACCACACTTTGT-T-CTTGTTTTGTTTTTTGGTATTTGAAT 830
Query 823 TGGTTTGTATTT 834
||||||||||||
Sbjct 831 TGGTTTGTATTT 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5