BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485819
Length=2480
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54220.1 | Symbols: SCR, SGR1 | GRAS family transcription fa... 3709 0.0
> AT3G54220.1 | Symbols: SCR, SGR1 | GRAS family transcription
factor | chr3:20070158-20072780 FORWARD LENGTH=2509
Length=2509
Score = 3709 bits (2008), Expect = 0.0
Identities = 2356/2517 (94%), Gaps = 52/2517 (2%)
Strand=Plus/Plus
Query 1 AGAAAGAGTTAACATGAATAGAGATAGAAAGAGTCATTAAATGTACGAAGCGACATTCAC 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AGAAAGAGTTAAGATGAATAGAGATAGAAAGAGTCATTAAATGTACGAAGCGACATTCAC 63
Query 61 AATAATTCGAAAGGTGGAAGACGACTTAGATACGGCCAGGCTTCACTG---TCCTCGTCC 117
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 64 AATAATTCGAAAGGTGGAAGACGACTTAGATACGGCCAGGCTTCACTGTCCTCCTCGTCC 123
Query 118 TCCTCAA-TA-CCCAAACCCCTTTTTCCCGGGATTCATCTCCAACCCACTTCCTTCCAAA 175
||||||| || ||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 124 TCCTCAATTACCCCTAACCCCTTTTT-CCGGGATTCATCTCCAACCCACATCCTTCCAAA 182
Query 176 --ATCACCCCCTCACTGAGTTTTTGCTTTTTCTCATTTACTCATCGGAGATCGTGATGAA 233
||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 183 TTCTCACCCCCTCACTGAGTTTTTGCTTTTTCTC-----CTCATCGGAGATCGTGAAGAC 237
Query 234 GATGAAGTAATTTAAGAATCTCCCCCATTGATTAAAGAGTCTAGCTTTTCTTACTACCAA 293
||| |||||||||||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct 238 GATCAAGTAATTTAAGAATC-CCACCATTGATAAAAGAGTCTAGCTTTTC-TACTACCAA 295
Query 294 ACCCTTTTCTGTTTGGAAATTTTCGATTTTGGATTTTGCCCTTTTCTTCA-C-TATTTAT 351
||| |||||||||||||||||||||||||||||||| |||||||||| | | |||||||
Sbjct 296 ACCTTTTTCTGTTTGGAAATTTTCGATTTTGGATTTAACCCTTTTCTT-ACCTTATTTAT 354
Query 352 AACCATGCAATCCCACGA-C--CAACCCTTCAATCTCCATGGCGGAATCCGGCGATTTCA 408
|||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 355 AACCATGCAATCTCACGACCAACAACCCTTCAATCTCCATGGCGGAATCCGGCGATTTCA 414
Query 409 ACGGTGGTCAACCTCCTCCTCATAGTCCTATAAGAACCACTTCTTCCGGTAGTAGTAGCA 468
||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||
Sbjct 415 ACGGTGGTCAACCTCCTCCTCATAGTCCTCTGAGAACAACTTCTTCCGGTAGTAGCAGCA 474
Query 469 GCAACAACCGTAG------TGCTCCACCTCCTCCTCCTTTAGTGATGGTGAGAAAACGAT 522
||||||||||| | | |||| |||||||||||||||||||||||||||||| |||
Sbjct 475 GCAACAACCGTGGTCCTCCTCCTCCTCCTCCTCCTCCTTTAGTGATGGTGAGAAAAAGAT 534
Query 523 TAGCTTCCGAGATGTCTTCTAACCCTGACTACAACAACCCCTCTCGCCCTCCTCGCCGTG 582
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 535 TAGCTTCCGAGATGTCTTCTAACCCTGACTACAACAACTCCTCTCGTCCTCCTCGCCGTG 594
Query 583 TCTCTCACCTCCTTGACTCCAACTACAATACTGTTTCACCACAACAACCA------C--- 633
|||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 595 TCTCTCACCTTCTTGACTCCAACTACAATACTGTCACACCACAACAACCACCGTCTCTTA 654
Query 634 CGGCGACGG-T--TGTATCTTCTCAACCAAACCCACCACTCTCTGTCTGTGGCTTCTCCG 690
||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 655 CGGCGGCGGCTACTGTATCTTCTCAACCAAACCCACCACTCTCTGTTTGTGGCTTCTCTG 714
Query 691 GTCTTCCGGTTTTTCCTTCAGACCGTGGTGGTCGGAATG-T-T-ATGTCCGTACAACCAA 747
||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 715 GTCTTCCCGTTTTTCCTTCAGACCGTGGTGGTCGGAATGTTATGATGTCCGTACAACCAA 774
Query 748 TGGATCAAGACTCTTCATCTTCTTCTGCTTCACCTACAATTTGGGTTGACGCCATTATCA 807
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 775 TGGATCAAGACTCTTCATCTTCTTCTGCTTCACCTACTGTATGGGTTGACGCCATTATCA 834
Query 808 GAGACCTTATCCACTCCTCAACTTCAGTCTCTATTCCTCAACTTATCCAAAACGTTAGAG 867
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GAGACCTTATCCATTCCTCAACTTCAGTCTCTATTCCTCAACTTATCCAAAACGTTAGAG 894
Query 868 ACATTATCTTCCCTTGTAACCCAAATCTTGGTGCTCTTCTTGAATACAGACTCCGATCTC 927
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 895 ACATTATCTTCCCTTGTAACCCAAATCTCGGTGCTCTTCTTGAATACAGGCTCCGATCTC 954
Query 928 TCATGCTTCTTGATCCTTCCTCATCCTCTGACCCTTCTCCTCAAACTTTCGAACCTCTCT 987
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 955 TCATGCTCCTTGATCCTTCCTCTTCCTCTGACCCTTCTCCTCAAACTTTCGAACCTCTCT 1014
Query 988 ATCAGATCTCCAACAATCCTTCTCCTcaacaacaacaacaacaacaacaacaccagcaac 1047
||||||||||||||||||||||||||| |||||| ||||| || || ||||| || ||||
Sbjct 1015 ATCAGATCTCCAACAATCCTTCTCCTCCACAACAGCAACAGCAGCACCAACAACAACAAC 1074
Query 1048 aacaGCATAAGCCTCCTCCTCCTCCGATTCAGCAGCAAGAAAGAGAAAATTCTTCCACCG 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1075 AACAGCATAAGCCTCCTCCTCCTCCGATTCAGCAGCAAGAAAGAGAAAATTCTTCTACCG 1134
Query 1108 ATGCACCACCACCACCAGAGACGGTGACGGCCACCGTCCCCGCCGTGCAAACAAATACAG 1167
|||||||||| | ||||||||| ||||||||||| || |||||||| ||||||||||| |
Sbjct 1135 ATGCACCACCGCAACCAGAGACAGTGACGGCCACTGTTCCCGCCGTCCAAACAAATACGG 1194
Query 1168 CAGAGGCGTTaagagagagaaaagaagaaattaagagacaaaagcaagacgaagaagGTT 1227
| ||||| ||||||||||| || ||||| |||||||| || ||||||||||||||||| |
Sbjct 1195 CGGAGGCTTTAAGAGAGAGGAAGGAAGAGATTAAGAGGCAGAAGCAAGACGAAGAAGGAT 1254
Query 1228 TACACCTCCTCACATTGCTGCTACAGTGCGCTGAAGCAGTCTCTGCTGATAATCTCGAAG 1287
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1255 TACACCTTCTCACATTGCTGCTACAGTGTGCTGAAGCTGTCTCTGCTGATAATCTCGAAG 1314
Query 1288 AAGCAAACAAGCTTCTTCTCGAGATCTCTCAATTATCTACTCCTTACGGGACCTCAGCGC 1347
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1315 AAGCAAACAAGCTTCTTCTTGAGATCTCTCAGTTATCAACTCCTTACGGGACCTCAGCGC 1374
Query 1348 AGAGAGTAGCTGCTTACTTCTCGGAAGCTATGTCAGCGAGATTACTCAACTCGTGTCTCG 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AGAGAGTAGCTGCTTACTTCTCGGAAGCTATGTCAGCGAGATTACTCAACTCGTGTCTCG 1434
Query 1408 GGATTTACGCGGCCTTGCCTTCACGGTGGATGCCTCAAACGCATAGCTTGAAGATGGTCT 1467
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1435 GAATTTACGCGGCTTTGCCTTCACGGTGGATGCCTCAAACGCATAGCTTGAAAATGGTCT 1494
Query 1468 CTGCATTTCAAGTGTTTAATGGGATAAGCCCATTAGTGAAATTCTCACACTTTACAGCGA 1527
|||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1495 CTGCGTTTCAGGTCTTTAATGGGATAAGCCCTTTAGTGAAATTCTCACACTTTACAGCGA 1554
Query 1528 ATCAGGCGATTCAAGAAGCGTTTGAGAAAGAAGACAGTGTACACATCATTGACTTGGACA 1587
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ATCAGGCGATTCAAGAAGCATTTGAGAAAGAAGACAGTGTACACATCATTGACTTGGACA 1614
Query 1588 TTATGCAAGGACTTCAATGGCCTGGTTTATTCCACATTCTCGCTTCTAGACCTGGAGGAC 1647
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1615 TCATGCAGGGACTTCAATGGCCTGGTTTATTCCACATTCTTGCTTCTAGACCTGGAGGAC 1674
Query 1648 CTCCTCACGTGCGTCTCACGGGACTTGGTACTTCCATGGAAGCTCTTCAGGCTACAGGGA 1707
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CTCCACACGTGCGACTCACGGGACTTGGTACTTCCATGGAAGCTCTTCAGGCTACAGGGA 1734
Query 1708 AACGTCTTTCGGATTTCGCCGATAAGCTTGGCCTGCCTTTTGAATTCTGCCCTTTAGCTG 1767
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1735 AACGTCTTTCGGATTTCGCAGATAAGCTTGGCCTGCCTTTTGAGTTCTGCCCTTTAGCTG 1794
Query 1768 AGAAAGTTGGAAACTTGAACACTGAGAGGCTCAATGTAAGGAAAAGAGAAGCTGTGGCTG 1827
||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1795 AGAAAGTTGGAAACTTGGACACTGAGAGACTCAATGTGAGGAAAAGGGAAGCTGTGGCTG 1854
Query 1828 TTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGCTCTGATGCACACACTCTCTGGT 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 TTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGCTCTGATGCACACACTCTCTGGT 1914
Query 1888 TACTCCAAAGATTAGCTCCTAAAGTTGTGACAGTAGTGGAACAAGATCTGAGCCACGCTG 1947
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1915 TACTCCAAAGATTAGCTCCTAAAGTTGTGACAGTAGTGGAACAAGATTTGAGCCACGCTG 1974
Query 1948 GTTCTTTCTTAGGAAGATTTGTAGAAGCAATACATTACTACTCCGCACTGTTTGACTCGT 2007
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1975 GTTCTTTCTTAGGAAGATTTGTAGAAGCAATACATTACTACTCTGCACTCTTTGACTCAC 2034
Query 2008 TGGGGGCAAGCTACGGCGAAGAGAGCGAAGAGAGACATGTAGTGGAGCAGCAGCTATTAT 2067
|||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 2035 TGGGAGCAAGCTACGGCGAAGAGAGTGAAGAGAGACATGTCGTGGAACAGCAGCTATTAT 2094
Query 2068 CGAAAGAGATACGGAATGTATTGGCGGTTGGAGGACCGTCGAGGAGCGGTGAAGTGAAGT 2127
|||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 2095 CGAAAGAGATACGGAATGTATTAGCGGTTGGAGGACCATCGAGAAGCGGTGAAGTGAAGT 2154
Query 2128 TTGAGAGCTGGAGGGAGAAAATGCAACAATGTGGGTTTAAAGGTATATCATTAGCTGGCA 2187
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2155 TTGAGAGCTGGAGGGAGAAAATGCAACAATGTGGGTTTAAAGGTATATCTTTAGCTGGAA 2214
Query 2188 ATGCAGCTACACAAGCGACTCTACTCTTGGGAATGTTTCCTTCGGATGGATACACTTTGG 2247
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2215 ATGCAGCTACACAAGCGACTCTACTGTTGGGAATGTTTCCTTCGGATGGTTACACTTTGG 2274
Query 2248 TTGATGATAATGGTACACTTAAGCTTGGGTGGAAAGATCTCTCGTTACTCACTGCTTCAG 2307
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2275 TTGATGATAATGGTACACTTAAGCTTGGATGGAAAGATCTTTCGTTACTCACTGCTTCAG 2334
Query 2308 CTTGGACACCTCGTTCTTAGTTTTCT-CTCTTTTTTCAGAAACAATGTGCCCATAAATAG 2366
||||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 2335 CTTGGACGCCTCGTTCTTAGTTTTCTTCTCCTTTTTCACAAACAATGTGCCCATAAATAG 2394
Query 2367 ATCTACTTGGGTTTTACTTTTTTGTTTATGTATCAAAAAGAGAGGATTTTT--AAGTCAA 2424
|| ||| || |||| ||||||||| |||||||||||||||||||||||| |||||||
Sbjct 2395 ATTTACCTG--TTTT--TTTTTTGTT-ATGTATCAAAAAGAGAGGATTTTTTGAAGTCAA 2449
Query 2425 ATTGTTCTCACTCACACTCTGTAT-GGACTACCTGATTGGTGGAATACATAGAAGTT 2480
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2450 ATTGTTCTCACTCACACTCTGTATTGG-CTACCTGATTGGTGGAATACATAGAAGTT 2505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123059511179
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5