BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485821
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54240.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1768 0.0
> AT3G54240.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:20080926-20082145 FORWARD LENGTH=1053
Length=1053
Score = 1768 bits (957), Expect = 0.0
Identities = 1021/1053 (97%), Gaps = 0/1053 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAAATGGTTAATAACAGGAGCAGTGGTAATAGTGTTGATTGGATTAGGGGCATGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAAATGGTTAATAACAGGAGCAGTGGTAATAGTGTTGATTGGATTAGGGGCATGG 60
Query 61 GCTTTTGTTTCCATTAGACCTCCACCTCCTAAGAGATGCGGAACCCCCGGTGGACCGCCT 120
||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GCTATTGTTTCCATTACACCTCCACCTCCTAAGAGATGCGGAACCCCAGGTGGACCGCCT 120
Query 121 ATTACCGCCCCTAGGATCCGTCTCAGCGATGGCCGCTATTTGGCCTATGAAGAACATGGA 180
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 121 ATTACCGCCCCTAGGATACGTCTCAGCGATGGCCGTTATTTAGCCTATGAAGAACATGGA 180
Query 181 GTTAGTAGACAAAATGCCACTTTCAAGATCATCTTTATCCACGCATTCTCAACATTTAGG 240
|||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 181 GTTAGTAGACAAAATGCCACTTTCAAGATCGTCTTTATCCATGCATTCTCGACATTTAGG 240
Query 241 CGCGACGCTGTTATCGCCAACCGTGTTCGCCCTGGCTTTCTCGAGAAAAATGGCATCTAC 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGTGACGCTGTTATCGCCAACCGTGTTCGCCCTGGCTTTCTCGAGAAAAATGGCATCTAC 300
Query 301 GTGGTTTCATATGATCGACCTGGTTATGGAGAGAGCGATCCTCACTCGAGTCGCAGTGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GTGGTTTCATATGATCGACCTGGTTATGGAGAGAGCGATCCTCACTCGAGTCGCAATGAA 360
Query 361 AAGACTTTAGCGCATGATGTTGAACAACTTGCTGACCAACTACAACTTGGTTCCAAATTT 420
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGACTTTAGCTCATGACGTTGAACAACTTGCTGACCAACTACAACTTGGTTCCAAATTT 420
Query 421 TACGTGGTTGGGTACTCAATGGGAGGTCAAGCCGTTTGGGGTGTTCTCAAGTACATTCCT 480
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 TACGTGGTTGGATACTCAATGGGAGGTCAAGCCGTTTGGGGTGTTCTCAAATACATTCCT 480
Query 481 CACAGGCTCGCAGGAGCGACATTGCTTTGTCCTGTAACCAACTCATGGTGGCCGAGTTTC 540
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 481 CACAGGCTCGCAGGAGCGACACTGCTTTGTCCTGTGACCAACTCATGGTGGCCGAGTTTC 540
Query 541 CCGGATAGTTTGACATGGGAGCTGTGGAACAAACAATCAAAATCCGAAAGGTTTGCGATG 600
|| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 541 CCAGATAGTTTGACATGGGAGCTATGGAACAAACAATCAAAATCCGAAAGGTTTTCGATG 600
Query 601 CTCGTTACTCATCATACTCCATGGCTACTCTATTGGTGGAACAATCAAAAGCTATTCGCA 660
||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 601 CTCATTACTCATCACACTCCATGGCTACTCTACTGGTGGAACAATCAAAAGCTATTTTCA 660
Query 661 ACAACAGCTGTGATGCAATCAAGCCCCAATATGTTCTCTCCTCAAGATCTTGCACTACTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAACAGCTGTGATGCAATCAAGCCCCAATATGTTCTCTCCTCAAGATCTTGCACTACTG 720
Query 721 CCCAAACTCGCCGCAAGGGTGTCTTACAAGAACCAAACAACGCAACAAGGGACACACGAA 780
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 CCCAAACTCGCCGCAAGGGTGTCTTACAAGAACCAAACAACACAACAAGGGACACACGAA 780
Query 781 TCACTAGACCGAGACCTGATTGTTGGATTTGGAAAATGGAGTTTTGACCCTATGAAGATC 840
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 TCACTTGACCGAGACCTGATTGTTGGATTTGGGAAATGGAGTTTTGACCCTATGAAGATC 840
Query 841 GAGAATCCATTCCCTAAGGGTGAAGGTTCGGTACATATGTGGCAAGGGGATGATGATCGG 900
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAGAATCCGTTCCCTAAGGGTGAAGGTTCGGTACATATGTGGCAAGGGGATGATGATCGG 900
Query 901 CTCGTCCCGATACAACTACAAAGAATCATTGCTCAGAAACTAAGTTGGATCAAGTATCAT 960
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 901 CTCGTCCCGATACAACTACAAAGGATCATTGCTCAGAAACTAACTTGGATCAAGTATCAT 960
Query 961 GAGATTCCAGGTGCTGGTCATATTTTTCCGATGGCTGATGGGATGGCAGAAACTGTCTTA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 GAGATTCCAGGTGCTGGTCATATTTTTCCGATGGCTGATGGGATGGCAGAAACTATCTTA 1020
Query 1021 AAAGAACTCTTGCCTATTCCTCAATCATCTTAA 1053
|||||||||||||||||||||||||||||||||
Sbjct 1021 AAAGAACTCTTGCCTATTCCTCAATCATCTTAA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5