BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485826
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54290.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2019 0.0
> AT3G54290.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED
IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE
cation-binding motif (InterPro:IPR012312); Has
59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria
- 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses -
0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:20104399-20106044
REVERSE LENGTH=1476
Length=1476
Score = 2019 bits (1093), Expect = 0.0
Identities = 1283/1369 (94%), Gaps = 35/1369 (3%)
Strand=Plus/Plus
Query 1 AGTTCCTAAAGCTTTTGGCAATTTGATAATGGCGTGATACCTTTTT-TCATTCTCTCAAC 59
|||||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||
Sbjct 10 AGTTCCTAAAGCTTTTGGCAATATGATAATGGCGTGATACCTTTTTCTC-TCCTCTCAAC 68
Query 60 AAACGCGCCTCTAAAtctctctctcatcttctccgactccaatttcttgcaattcactcc 119
|||||||||||| || |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 69 AAACGCGCCTCT-AA--TCTCTC-AATCTTCTCCAACTCCAATTTCTTGCAATTCACTCC 124
Query 120 aacttcttcttc-tc-tc-tc-tctctctctctc------tctAGATTTCGTTTCTCACG 169
|||||||||||| || || || |||||||||||| ||||||||||||||||||||
Sbjct 125 AACTTCTTCTTCATCTTCTTCTTCTCTCTCTCTCTGAGATTCTAGATTTCGTTTCTCACG 184
Query 170 TTTTCTTCACCAAATATGGGAACCTGCTTCTCCAGCTCCACTAAATCCACGGCTGAGATC 229
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 185 TTTTCTTCACCAAATATGGGAACCTGCTTCTCCAGCTCAACTAAATCCACGGCTGAGATC 244
Query 230 TCTCCCTTTGACCTCGTCGTCAAACCTCCTCCTTCTTCCGCCGCCGCCGCCACTGCACCA 289
||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 245 TCTCCCTTTGACCTCGTCGTCAAACCTCCTCCTCCTT---CCGCCGCCGCCACCGCACCA 301
Query 290 CCAACCCAACGAATCCCCACCGCCACGGCCACAAAAACAGAGACGGTGAGCTTCGCCGCA 349
|||||||||||||||||||||| || ||| ||||| ||||||||||||| |||||
Sbjct 302 CCAACCCAACGAATCCCCACCG---CGAAAACAGAAACATCGACGGTGAGCTTCACCGCA 358
Query 350 ACAGTGAGGTTGTACGGACCACCTAACAGTCTGGTTACTTCGTATCTCCGTTTCGCTCTT 409
|||||||| || |||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 359 ACAGTGAGATTATACGGACCACCTAACAGTCTAGTGACGTCGTATCTCCGTTTCGCTCTT 418
Query 410 CTTCACAAGAAAGTTCCTCTCCGTTTCGTTCCATCGGAAGACCAAAAGCCGACGATTCAA 469
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 CTCCACAAGAAAGTTCCGCTCCGTTTCGTTCCATCGGAAGACCAAAAACCGACGATTCAA 478
Query 470 ATCGGATCCGAGACTGTATCAGGAGGATCTCTAGAGGTTCTTCTCCGTTACATCGAGGAT 529
||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 479 GTCGGATCGGAGACTGTATC---AGGTTCTCGAGAGGTTCTTCTCCGTTACATCGAGGAT 535
Query 530 AAGTTCCCGGAGCCGCGTTTGATGATTTGGAAGTTTAATCTAGAAGGTTTCGACGAAGCG 589
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 536 AAGTTCCCAGAGCCGCGTTTGATGATTTGGAAGTTTAATCTGGAAGGCTTCGACGAAGCG 595
Query 590 ACTCCATTGATAGTG-AGAGCGATTTGGCTTCAGCATAGGAGTATGTTGTGGCATATGGA 648
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 596 ACTCCATTGATAGTGAAGA-TGATTTGGCTTCAGCATAGGAGTATGTTGTGGCATATGGA 654
Query 649 GAGGATGTTGAGATGGTCGGAGGATCTGGCGGCGCGTGGAGGTAAAAAAGCGGTGGATCC 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAGGATGTTGAGATGGTCGGAGGATCTGGCGGCGCGTGGAGGTAAAAAAGCGGTGGATCC 714
Query 709 GTCGGTGGGAACACCGAAGATGGAGATTAGGAAATTTGCAAAGAGTTATACACATTTACA 768
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 715 GTCTGTGGGAACACCGAAGATGGAGATTAGGAAATTTGCAAAGAGTTATACTCATTTACA 774
Query 769 AGAGCTTATGCTTGAACATGCTCAAATGGAAGAGAGAATCTTGTTCCCTGTTCTTGAATC 828
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GGAGCTTATGCTCGAACATGCTCAAATGGAAGAGAGAATCTTGTTCCCTGTTCTTGAATC 834
Query 829 TGTTGATCGAGGGATGTGTAAAAGTGCAAATGAGGAACATGGAAGAGAATTACCAATGAT 888
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 835 TGTTGATCGAGGGATGTGTAAAAGTGCAAATGAAGAACATGGGAGAGAATTACCAATGAT 894
Query 889 GAATGGAATCAAAGAAGATATCAAATCTATTGGAGTTTTGGATTCTGGGATTTGTTCAGA 948
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GAATGGTATCAAAGAAGATATCAAATCTATTGGAGTTTTGGATTCTGGGATTTGTTCAGA 954
Query 949 AGCTCTCTTTAGTCTTGCTTCACGTTTCAAATCATTGCAGATGATGTGTAAAACACATTT 1008
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 955 AGCTCTCTTTAGTCTTGCTTCTCGTTTCAAATCATTGCAGATGATGTGTAAAACACATTT 1014
Query 1009 TGAAGAGGAAGAGAAAGATTTATTGCCAATGGTGGAAGCTGCAGAAATGGGGAAAGAGAA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGAAGAGGAAGAGAAAGATTTATTGCCAATGGTGGAAGCTGCAGAAATGGGGAAAGAGAA 1074
Query 1069 GCAGAAGAAATTGTTGAATCAAGGCTTGGAAGTTATGAGTGGGACTCATTCTAATTCGTT 1128
||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 1075 GCAGAAGAAATTGATGAATCAAAGCTTAGAAGTTATGAGTGGGACTCATTCTAACTCGTT 1134
Query 1129 TGATTTCCTACTAGAGGGTCTTACTCCTCAAGAAGCTATGCAGTATCTTGACTTGCTCAT 1188
||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 1135 TGATTTCCTACTAGAAGGTCTCACTCCACAAGAAGCTATGCAGTATATTGACTTGCTCAT 1194
Query 1189 GAAATTTGGTGATCCAAATCTTATTTCATCTTTTCTCTGCTCTGATGTTGTTGACTGAAT 1248
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1195 GACATTTGGTGATCCAAATCTTATCTCATCTTTTCTCTGCTCTGATGTTGTTGACTGATT 1254
Query 1249 T-ATC-TTTTATAGGTTTACTTTGTGAAAAACTACTGTTGTTGTGTGTGGGGTTGTGAAT 1306
| ||| |||| |||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1255 TTATCCTTTT-TAGGCTCACTTTGTGAAAAACT---GTTGTTGTGTGTGGGGTTGTGAAT 1310
Query 1307 TTTGTGTATATAGAGTCAGATT-GTCGATTTCAGGTGTTGCTATGTTTT 1354
|||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1311 TTTGTGTATATAGAGTCAGATTTGTCGATT-CAGGTGTTGCTATGTTTT 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5