BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485829
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54310.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1576 0.0
> AT3G54310.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G38430.1);
Has 44 Blast hits to 41 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20111153-20112944
REVERSE LENGTH=1077
Length=1077
Score = 1576 bits (853), Expect = 0.0
Identities = 1009/1084 (93%), Gaps = 11/1084 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTACGTTCCACCACATAAACGACATGAAAATGTTGCATTGAGAGCATCCTCTGTA 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTACGTTCCACCACATAAACGACTTGAAAATGTTGCATTGAGAGCATCCTCTGTT 60
Query 61 CCACCTTCTCTTCTTACAAAGCTCAATAAAAACCTCGGGAGTACTAATACAAAGATAATC 120
|||||||||||||||| ||| | |||||||||| ||||||||||||||||||||||||||
Sbjct 61 CCACCTTCTCTTCTTAAAAAACACAATAAAAACGTCGGGAGTACTAATACAAAGATAATC 120
Query 121 TACGCAAACGATTGCATTTCTAGATGGTTTCTCGTTGGTTCAGAAT-CAGAGGACAATAA 179
|||||||||| || ||||||||||||||||||||||||||| | || ||||||| | ||
Sbjct 121 TACGCAAACGGTTACATTTCTAGATGGTTTCTCGTTGGTTC-GGATCCAGAGGATAGCAA 179
Query 180 CTTTCAACTTGTGCCCGTTTCTTTAAAGTGGAGGAAAGACGCAGAAGAAAAATCTTTGGG 239
||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 180 CTTTCAACTTGTGCCCGGTTCTTCAGAGTGGAGGAAAGACGCAGAAGAAAAATCTTTGGT 239
Query 240 AATCTTAGTGAAGAGTGATTTTGGAAAACAGGAAACTCCATGGTTATGGGTGACAGAGAA 299
|||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 240 AATCTTAGCGAAGAGTGATTTGGGAAAACTGGAAAATCCATGGTTATGGGTGACAGAGAA 299
Query 300 AGTGGAGGATGATC-TTATAAAGGGGTTTGATAGGGCAAAGAAGACGTTGCTACGTTACG 358
|||||||||||| | |||||| ||| ||||||||||||||||||||||||||| |||| |
Sbjct 300 AGTGGAGGATGA-CATTATAATGGGATTTGATAGGGCAAAGAAGACGTTGCTAGGTTATG 358
Query 359 GTGGATCAGAGGATGTCAAACTCAGACTGATCGCTCGATTT-GATACTCTAAGAGATGGT 417
||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 359 GTGGATCAGAGGATGTCAAACTCAGACTGATCGCTCGGTTTGGA-ACTCTAAGAGATGGT 417
Query 418 CCGTTAACTAAAAGCACATTGGA-AAATTTGAAGAAAACGTTTCGTACAAATGTCCCAAA 476
||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 418 CCGTTAACTAAAAGCACTTTGGAGAAA-TTGAAGAAAATGTTTCGTACAAATGTCCCAAA 476
Query 477 GTCTTACGTTGAAAACGTTAGGTATGGAGTTGTGCACAAAATGAGATTTTGTGTTGAAGA 536
|||||| || ||||| ||| ||||| ||| ||| ||||||||| ||||||||||||||||
Sbjct 477 GTCTTATGTCGAAAATGTTGGGTATAGAGCTGTACACAAAATGGGATTTTGTGTTGAAGA 536
Query 537 AACCAAAGAGTTGTATCACGTGAAGGTCGCAGACAACACTCGTCCTGATGTAACCATCTC 596
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 537 AACCAAAGAGTTGTATCACGTGAAGGTCTCAGACAACACTCGTCCTGATGTAACCATTTC 596
Query 597 ATGTAAATGTTTGGCGGAGCTTAATGCTTTGAGGCACTTAACTCTTGACGTCTCATGCCT 656
|||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 597 ATGTAAATGTATGGCTGAGCTTAATGCTTTGAGGCACTTAAATCTTGACGTCTCATGCCT 656
Query 657 TGATCAAGATCTTGACATGAGGTTGGTGGTTGACTCAAAAGGGACATTAACCAATCTCTC 716
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 657 TGATCAAGATCTTGACATGAGGTTGATGGTTGACTCAAAAAGGACATTAACCAATCTCTC 716
Query 717 AGAGAATGAGATTAAGAATCTCAAAGAATTGACTGATTCAGCGGTGATAGATCCAACTGT 776
||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 717 TGAGAATGAGATTACGAATCTTAAAGAATTGACTGATTCAGCGGTGGTAGATCCAACTGT 776
Query 777 GAAAGGTGGGTTAAAGTGGCCACTTGGGAAATCTTCTTGTGCGGATCGATATAGAGTTTG 836
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 777 GAAAGGTGGGTTAAAGTGGCCACTTGGGAAATCTTCTTGTGCGGATCGATACATTGTTTG 836
Query 837 TGGTGTTTGGCATACTGTAACTACTACGTACAGAAACCAGACTCTGAGGCTTCAAATCCG 896
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 837 TGGTGTTTGGCATACTGTAACTACTACGTACATAAACCAGACTATGAGGCTTCAAATCCG 896
Query 897 AGAGGCTGATCGATATGATTTCCGCACAGGAATTGGAGGAACCTCAAGTGAAGTGAATTT 956
|||||||||||||||||||||| | || ||| ||||||||||||||||||||||||||||
Sbjct 897 AGAGGCTGATCGATATGATTTCAGAACTGGAGTTGGAGGAACCTCAAGTGAAGTGAATTT 956
Query 957 CAAATTGAAAGCCTTAAAAAGTAGTATACTACTAAAGGAGGAAGATGTGGAGAGGAAATG 1016
|||| | ||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 957 CAAACTAAAAGCATTAA---GTACTATACTACTAAAGGAGGAAGATGTGGAGAGGAAATG 1013
Query 1017 TGTTACAGACATGCTGAAAGATTGTCTGAAAGCAGTTTGGGATTACTTTCTGAAAGAAGT 1076
|||| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 1014 TGTTTCAGACATGCTGAAAGATTGTCTGAAAGCGGTTTGGGAATACTTTTTGAAAGAAGT 1073
Query 1077 GTAG 1080
|||
Sbjct 1074 TTAG 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5