BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485830
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54320.1 | Symbols: WRI1, WRI, ASML1, ATWRI1 | Integrase-typ... 2023 0.0
> AT3G54320.1 | Symbols: WRI1, WRI, ASML1, ATWRI1 | Integrase-type
DNA-binding superfamily protein | chr3:20114684-20118627
FORWARD LENGTH=1470
Length=1470
Score = 2023 bits (1095), Expect = 0.0
Identities = 1269/1350 (94%), Gaps = 24/1350 (2%)
Strand=Plus/Plus
Query 72 TTTCCCAGATTTTAATGAAGAGGCGCTTAACCacttccacttcttcttcttctccatctt 131
|||| |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 112 TTTCTCAGAGTTTAATGAAGAAGCGCTTAACCACTTCCACTTGTTCTTCTTCTCCATCTT 171
Query 132 cctctgtttcttcttctactactacttcctctcctattcAATCGGAGGCTCCCAGGCCTA 191
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 172 CCTCTGTTTCTTCTTCTACTACTACTTCCTCTCCTATTCAGTCGGAGGCTCCAAGGCCTA 231
Query 192 AACGAGCCAAAAGGGCTAAGAAATCTTCTCCTTCTGGTGATAAATCACATAACCCGACAA 251
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 232 AACGAGCCAAAAGGGCTAAGAAATCTTCTCCTTCTGGTGATAAATCTCATAACCCGACAA 291
Query 252 GCCCTGCTTCTACCAGACGCAGCTCTATCTACAGAGGAGTCACTAGACATAGATGGACTG 311
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GCCCTGCTTCTACCCGACGCAGCTCTATCTACAGAGGAGTCACTAGACATAGATGGACTG 351
Query 312 GGAGATTCGAGGCTCATCTTTGGGACAAAAGCTCTTGGAATTCGATTCAGAACAAGAAAG 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GGAGATTCGAGGCTCATCTTTGGGACAAAAGCTCTTGGAATTCGATTCAGAACAAGAAAG 411
Query 372 GCAAAC-A----A----GGAGCATATGACAGCGAAGAAGCAGCAGCACATACGTACGATC 422
|||||| | | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 412 GCAAACAAGTTTATCTGGGAGCATATGACAGTGAAGAAGCAGCAGCACATACGTACGATC 471
Query 423 TGGCTGCTCTCAAGTACTGGGGACCCGATACCATCTTGAATTTTCCGGCAGAGACGTACA 482
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 472 TGGCTGCTCTCAAGTACTGGGGACCCGACACCATCTTGAATTTTCCGGCAGAGACGTACA 531
Query 483 CAAAGGAATTGGAAGAAATGCAGAGAGTGACAAAGGAAGAATATTTGGCTTCTCTCCGCC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CAAAGGAATTGGAAGAAATGCAGAGAGTGACAAAGGAAGAATATTTGGCTTCTCTCCGCC 591
Query 543 GCCAGAGCAGTGGTTTCTCCAGAGGCGTCTCTAAATATCGCGGCGTCGCTAGGCATCACC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GCCAGAGCAGTGGTTTCTCCAGAGGCGTCTCTAAATATCGCGGCGTCGCTAGGCATCACC 651
Query 603 ATAACGGAAGATGGGAGGCTCGGATTGGAAGAGTGTTTGGGAACAAGTACTTGTACCTCG 662
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 652 ACAACGGAAGATGGGAGGCTCGGATCGGAAGAGTGTTTGGGAACAAGTACTTGTACCTCG 711
Query 663 GCACCTACAATACGCAGGAGGAAGCTGCTGCGGCGTATGATATGGCGGCGATAGAGTATC 722
||||||| ||||||||||||||||||||||| || ||||| ||||| ||||| |||||||
Sbjct 712 GCACCTATAATACGCAGGAGGAAGCTGCTGCAGCATATGACATGGCTGCGATTGAGTATC 771
Query 723 GAGGGGCTAACGCGGTTACTAATTTCGACATTAGTAATTACATCGACCGGTTAAAGAAGA 782
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 772 GAGGCGCAAACGCGGTTACTAATTTCGACATTAGTAATTACATTGACCGGTTAAAGAAGA 831
Query 783 AAGGTGTTTTCCCGTTCCCTGTGAACCAACCTAATCATCAAGAGGCTATTCTTGTTGAAG 842
||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||
Sbjct 832 AAGGTGTTTTCCCGTTCCCTGTGAACCAAGCTAACCATCAAGAGGGTATTCTTGTTGAAG 891
Query 843 CCAAACAAGAAATCGAAACGAGAGAAGCTAAAGAAGAGCCTagagaagaagtgaaacaac 902
||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 892 CCAAACAAGAAGTTGAAACGAGAGAAGCGAAGGAAGAGCCTAGAGAAGAAGTGAAACAAC 951
Query 903 agtacgtggaagaaccaccacaagaaga-gaa-agaag-aaga-ga-aa-gcagagcaac 956
||||||||||||||||||| |||||||| ||| ||||| |||| || || ||||||||||
Sbjct 952 AGTACGTGGAAGAACCACCGCAAGAAGAAGAAGAGAAGGAAGAAGAGAAAGCAGAGCAAC 1011
Query 957 aagaagcagagTTTGTAGGATATAAAGATGAAGGGGCGGTGGTCAATTGCTGCATAGACT 1016
||||||||||| ||||||||||| ||| |||| || ||||||||||||||||||||||
Sbjct 1012 AAGAAGCAGAGATTGTAGGATATTCAGAAGAAGCAGCAGTGGTCAATTGCTGCATAGACT 1071
Query 1017 CTTCAGCCATAATGGAAATGAATCGTTGTGGGGACAACAATGAGCTGGCTTGGAACTTCT 1076
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CTTCAACCATAATGGAAATGGATCGTTGTGGGGACAACAATGAGCTGGCTTGGAACTTCT 1131
Query 1077 GTATGATGGATTCAGGGTTTGCTCCGTTTTTGACGGATCAGAATCTCTCGAATGAGAATC 1136
||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 1132 GTATGATGGATACAGGGTTTTCTCCGTTTTTGACTGATCAGAATCTCGCGAATGAGAATC 1191
Query 1137 CCATCGAGTATCCGGAGCTTTTCAATGAGTTAGCATTTGAGGATAACATTGACTTCATGT 1196
|||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1192 CCATAGAGTATCCGGAGCTATTCAATGAGTTAGCATTTGAGGACAACATCGACTTCATGT 1251
Query 1197 TCGACGAAGCGAAGAACGACTGCTTGAGCTTGGAAAATCTGGATTGTTGCGTGGTGGGAA 1256
|||| || | |||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1252 TCGATGATGGGAAGCACGAGTGCTTGAACTTGGAAAATCTGGATTGTTGCGTGGTGGGAA 1311
Query 1257 GAGAGAGCCCAACTTCTTCGTCTTCACCATTGTCTTGCTTTTCTACTGACTCTGCTTCAT 1316
||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1312 GAGAGAGCCCACCCTCTTCTTCTTCACCATTGTCTTGCTTATCTACTGACTCTGCTTCAT 1371
Query 1317 CAACAACAACAACAAC--C-TCGGTTTCTTGTAACTATTTG-----GG-CTTGTTCGTTG 1367
|||||||||||||||| | ||||||||||||||||||||| || |||||||||||
Sbjct 1372 CAACAACAACAACAACAACCTCGGTTTCTTGTAACTATTTGTTTCAGGGCTTGTTCGTTG 1431
Query 1368 GTTCCGAATAATCAATGTCTTTGCCCCTTT 1397
|||| |||||||||||||||||||||||||
Sbjct 1432 GTTCTGAATAATCAATGTCTTTGCCCCTTT 1461
Score = 111 bits (60), Expect = 1e-23
Identities = 70/74 (95%), Gaps = 4/74 (5%)
Strand=Plus/Plus
Query 1 CAGGGTTTATTTAACTTGCCCTTTCTCGTTTCCTCCtttttttCTTAAACCACTCT--T- 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CAGGGTTTATTTAACTTGCCCTTTCTCGTTTCCTCCTTTTTTTCTTAAACCACTCTGCTT 60
Query 58 CCTTCTTCCTCTGA 71
||| ||||||||||
Sbjct 61 CCT-CTTCCTCTGA 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68824947195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5