BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485833
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54340.1 | Symbols: AP3, ATAP3 | K-box region and MADS-box t... 1578 0.0
> AT3G54340.1 | Symbols: AP3, ATAP3 | K-box region and MADS-box
transcription factor family protein | chr3:20119173-20121170
REVERSE LENGTH=1037
Length=1037
Score = 1578 bits (854), Expect = 0.0
Identities = 982/1039 (95%), Gaps = 27/1039 (3%)
Strand=Plus/Plus
Query 4 TCTTCTCAATATATCTCTTGTCCTCTCCATCAAATCTCTCTTCAACAAAAAGATTAAACA 63
|||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 13 TCTTCTCATTATATCTCTTGTCCTCTCCACCAAA--TCTCTTCAACAAAAAGATTAAACA 70
Query 64 AAGAGAGAAGAACATGGCGAGAGGGAAGATCCAGATCAAGAGGATAGAGAACCAGACAAA 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 AAGAGAGAAGAATATGGCGAGAGGGAAGATCCAGATCAAGAGGATAGAGAACCAGACAAA 130
Query 124 CAGACAAGTGACGTATTCAAAGAGAAGAAATGGTTTGTTCAAGAAAGCACATGAGCTCAC 183
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 131 CAGACAAGTGACGTATTCAAAGAGAAGAAATGGTTTATTCAAGAAAGCACATGAGCTCAC 190
Query 184 GGTTTTGTGTGATGCTAGGGTTTCGATTATCATGTTCTCTAGCTCCAACAAGCTTCATGA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GGTTTTGTGTGATGCTAGGGTTTCGATTATCATGTTCTCTAGCTCCAACAAGCTTCATGA 250
Query 244 GTATATCAGCCCTAACACCACAACGAAGGAGATCGTAGATCTGTACCAAAC-AGTTTCTG 302
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 251 GTATATCAGCCCTAACACCACAACGAAGGAGATCGTAGATCTGTACCAAACTA-TTTCTG 309
Query 303 ATGTTGATGTTTGGGCCACTCAATATGAGAGAATGCAAGAAACCAAGAGGAAACTGTTGG 362
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 310 ATGTCGATGTTTGGGCCACTCAATATGAGCGAATGCAAGAAACCAAGAGGAAACTGTTGG 369
Query 363 AGACAAATAGAAATCTCCGGACTCAGATTAAGCAGAGGCTAGGTGAGTGTTTGGACGAGC 422
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 370 AGACAAATAGAAATCTCCGGACTCAGATCAAGCAGAGGCTAGGTGAGTGTTTGGACGAGC 429
Query 423 TTGACATTCAGGAGCTGCGTCGTCTTGAGGATGAAATGGATAACACTTTCAAACTCGTTC 482
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 430 TTGACATTCAGGAGCTGCGTCGTCTTGAGGATGAAATGGAAAACACTTTCAAACTCGTTC 489
Query 483 GCGAGCGCAAGATT-AAATCTCTTGGGAATCAGATCGAGACCACCAAGAAAAAGAACAAA 541
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GCGAGCGCAAG-TTCAAATCTCTTGGGAATCAGATCGAGACCACCAAGAAAAAGAACAAA 548
Query 542 AGTCAACAAGACATACAAAAGAATCTCATACATGAGCTGGAACTAAGAGCTGAAGATCCC 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 AGTCAACAAGACATACAAAAGAATCTCATACATGAGCTGGAACTAAGAGCTGAAGATCCT 608
Query 602 CACTATGGACTAGTAGACAATGGAGGAGATTACGACTCAGTTCTTGGATATCAAATCGAA 661
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 609 CACTATGGACTAGTAGACAATGGAGGAGATTACGACTCAGTTCTTGGATACCAAATCGAA 668
Query 662 GGGTCGCGTGCTTACGCTCTTCGTTTCCACCAGAACCATCACCACCATTACCCAAACCAT 721
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 669 GGGTCACGTGCTTACGCTCTTCGTTTCCACCAGAACCATCACCACTATTACCCCAACCAT 728
Query 722 GCCCTTCATGCTCCCTCTGCCTCTGACATCATCACCTTCCACCTTCTTGAATAATTAAGG 781
| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 729 GGCCTTCATGCACCCTCTGCCTCTGACATCATTACCTTCCATCTTCTTGAATAATTAAAG 788
Query 782 GCTAAAAGGTTTGTTGGT-CCTATATCATTCTCTATCTAATTA---A-TAACTACTTAAA 836
||||||||||||| |||| || || |||| |||||||||||| | ||||||||||||
Sbjct 789 GCTAAAAGGTTTGCTGGTGCC-AT--CATTGTCTATCTAATTATTTAGTAACTACTTAAA 845
Query 837 AGCA-AACG-ACTGGTGTTGCTAAAACCTTAAACTGTTATGTTTCTTAGTTATGTATTTT 894
| || || | | ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 846 A-CATAAGGCA-TGGTGTTGCTAAAACCTTAAACTGTCATGTTTCTTAGTTATGTATTTT 903
Query 895 AAAGCCTTAA-AC-TATGGATTGTGTGATCAGTATAGCTTGCTGCTTAGGCTTATTGTGT 952
||||||| || | |||||||||||||||||||| | | ||| | |||||||||||||
Sbjct 904 AAAGCCTAAAGAAATATGGATTGTGTGATCAGTA--G-T-GCT--T-AGGCTTATTGTGT 956
Query 953 GTGAAATGTTATCAAGACTTTTATCATGTATCATATTATTATATTGACCACTCTACTTAA 1012
||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 957 GTGGAATGTTTTCAAGACTTTTATCATGTATCGTATTATTATATTGACCACTCTACTTAA 1016
Query 1013 TTATGCTCCATATCTACTC 1031
||||||| || || |||||
Sbjct 1017 TTATGCTACAAATTTACTC 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5