BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485837
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54360.1 | Symbols: | zinc ion binding | chr3:20128305-2013... 2002 0.0
> AT3G54360.1 | Symbols: | zinc ion binding | chr3:20128305-20131854
REVERSE LENGTH=1596
Length=1596
Score = 2002 bits (1084), Expect = 0.0
Identities = 1304/1403 (93%), Gaps = 43/1403 (3%)
Strand=Plus/Plus
Query 3 GACGACTTCTGTTTGCCCTTTCTCGAAAGCTGCTCGTCCTGACGATGCTTCCG-CTCGAA 61
|||||||||||||||||| |||||||||||||||||||||||||||| | || ||||||
Sbjct 119 GACGACTTCTGTTTGCCCGTTCTCGAAAGCTGCTCGTCCTGACGATGGGT-CGACTCGAA 177
Query 62 AACAAGGCGATACGGCGGCTTCTGGTTGCCCTTTTTCTAAAGCTGCTCGTCCCGACGATG 121
|||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 AACAAGGCGAAATTACCGCTTCTGGTTGTCCTTTTTCTAAAGCTGCTCGTCCCGACGATG 237
Query 122 CTTCTGCTCGAAAACAAGGCGAAATTACGGCTTCTGGTTGCCCTTTTTCTAAAGCTGCTC 181
| ||||||||||| ||||| |||| ||||||||||||||||||||||||||| | ||
Sbjct 238 CCTCTGCTCGAAAGCAAGGGGAAACGACGGCTTCTGGTTGCCCTTTTTCTAAA--T-CT- 293
Query 182 GTCCTGATGATGCCTCTGCACGAAAGAAAGACGAAATTGCAACTAAAGGATGTCCCGAAC 241
| || | | | ||| ||| || || | | | | |||||||||||| ||||
Sbjct 294 G--CT--CG-T--C-CTG-ACG-AA-AATG--G-----G--AGTAAAGGATGTCCTGAAC 333
Query 242 ACGAAGGAAAATTGAATAAGGACTCTACTGATTCTGCAACTGTGCCTGCCAAGTGCCCCT 301
| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 334 AAGAAGGAAACTTGAATAAGGACTCTACTGATTCTGCAACGGTACCTGCCAAGTGCCCTT 393
Query 302 TTGGTTATGACTCTCAAACATTCAAGCTTGGGCCTTTTAGCTGTATGCTATGTCAAGCAC 361
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 394 TTGGCTATGACTCTCAAACATTCAAGCTTGGGCCTTTTAGCTGTATGTTATGTCAAGCAC 453
Query 362 TTCTATATGAGAGCAGTAGATGTGTACCTTGCACACATGTGTTTTGCAAAGTGTGCTTAA 421
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 454 TTCTATATGAGAGCAGTAGATGTGTGCCTTGCACACATGTGTTCTGCAAAGTATGCTTAA 513
Query 422 CACGGTTTAAGGACTGCCCTCTTTGCGGTGCTGACATTGAAAGTATTGAAGCTGATGAAA 481
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 514 CACGGTTTAAGGACTGCCCTCTATGCGGTGCTGACATTGAAAGTATTGAAGTTGATGAAA 573
Query 482 ACCTACAAAAGATGGTTGATCAATTTATTGAAGGCCATGCTAGAATCAAGAGATCTATCG 541
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 574 ACCTTCAGAAGATGGTTGATCAATTTATTGAAGGCCATGCTAGAATTAAGAGATCTGTCG 633
Query 542 TCAATGGAACAGAAAAAGAAGAGATTGAAAATGATAACAAAAAAGTGATTTACGCTGATG 601
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 634 TCAATGGAACAGAAAAAGAAGAGGTCGAAAATGATAACAAAAAAGTGATTTACGCTGACG 693
Query 602 TTTCCATGGAAAGAGGTTCTTTCTTGGTGCAACAAGCTATGAGGGCATTTAGTGCCCAAA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TTTCCATGGAAAGAGGTTCTTTCTTGGTGCAACAAGCTATGAGGGCATTTAGTGCCCAAA 753
Query 662 ATTATGAAAGTGCTAAATCAAGGTTGGCAATGTGTACCGAGGATATTCGGGATCAACTAG 721
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 754 ATTATGAAAGTGCTAAATCAAGGTTGGCAATGTGTACCGAGGACATTCGGGATCAACTAG 813
Query 722 GGAGGGAGGGCAATACACCAGAGTTGTGTTCACAGCTTGGTGCAGTCCTTGGCATGCTTG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GGAGGGAGGGCAATACACCAGAGTTGTGTTCACAGCTTGGTGCAGTCCTTGGCATGCTTG 873
Query 782 GTGACTGTAGCCGAGCGATGGGAGACTCAAGCTCTGCAGTCAAGCATTTTGAAGAGAGTG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GTGACTGTAGCCGAGCGATGGGAGACTCAAGCTCTGCAGTCAAGCATTTTGAAGAGAGTG 933
Query 842 TTGAATTCCTTATGAAACTGCCGTTGAATGATTTGGAGATTACACATACACTTTCTGTCT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TTGAATTCCTTATGAAACTGCCGTTGAATGATTTGGAGATTACACATACACTTTCTGTCT 993
Query 902 CACTCAATAAAATAGGAGATCTTAAATATTATGACGAAGATCTACAAGCTGCAAGGTCGT 961
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 994 CACTCAATAAAATAGGAGATCTAAAATATTATGACGAAGATCTACAAGCTGCAAGGTCGT 1053
Query 962 ATTATGATAGAGCTTTAAATGTCAGACGTGATGTAATGAAGCATCACCCAAATGCTCCTT 1021
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1054 ATTATGATAGAGCTTTAAATGTCAGACGTGATGCAATGAAGCACCACCCAAATGCTCCTT 1113
Query 1022 CACAAATTCTGGATGTGGCAGTTTCCTTAGCCAAAGTTGCGGATATAGACAGGACTCTAC 1081
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CACAAATTCTGGATGTGGCTGTTTCCTTAGCCAAAGTTGCGGATATAGACAGGACTCTAC 1173
Query 1082 AAAATGAAGTTGCAGCAACAGATGGTTTCAAGGAAGGCATGAAACTGCTGGAATCTTTGA 1141
|||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1174 AAAATGAAGTTGCAGCGACAGATGGGTTCAAGGAAGGCATGAGACTGCTGGAATCTTTGA 1233
Query 1142 AACTGGACTCTGAAGATTCTGCTCTCGAGCAACGACGGCTCTCTGTGCTGGAGTTCCTTA 1201
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1234 AACTGGACTCTGAAGATTCTGCTCTCGAGCAACGGCGGCTCTCTGTACTGGAGTTCCTTA 1293
Query 1202 AGAAGCAAGTAGAGTAGCCTGAACAGTATGCAGAAACTGCACTCTAAATCGATGCATGCT 1261
||||||||||||| | || || | || |||||||||||||||| ||||||| |||
Sbjct 1294 AGAAGCAAGTAGAA-A-CC-GA----T--GCTGAAACTGCACTCTAAACCGATGCAGGCT 1344
Query 1262 TATGTACGTATATAGAAATTATACCTAAGCTCTCCTCTGTGGCATTTTGCTGAATAAAAG 1321
|| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 1345 TAAGTACGTATATAGAAATTATACCTAAGTTCTCGTCTGTGGCATTTTGCTGAATAAA-G 1403
Query 1322 AACGAGAAAGCAAAAAATGTTGTATTTGCGCTTAAGGGACAAAGAAACAGAGTGGTCTGT 1381
|| || |||||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1404 AA--AG----CAAAAA-TGTTGTATTTGCGCTCAAGGGACAAAGAAACAGAGTTGTCTGT 1456
Query 1382 ATGTTGTGAATTGTGATGGTTTT 1404
|||||||||||||||||||||||
Sbjct 1457 ATGTTGTGAATTGTGATGGTTTT 1479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71987581530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5