BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485838
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54380.1 | Symbols: | SAC3/GANP/Nin1/mts3/eIF-3 p25 family ... 2001 0.0
> AT3G54380.1 | Symbols: | SAC3/GANP/Nin1/mts3/eIF-3 p25 family
| chr3:20133893-20136803 REVERSE LENGTH=1364
Length=1364
Score = 2001 bits (1083), Expect = 0.0
Identities = 1270/1359 (93%), Gaps = 18/1359 (1%)
Strand=Plus/Plus
Query 1 TGGGACTTGGGAGGGAAGAAGATCTCGTTGCCTCTAAGCCATGGATCGTCGTAATCGTGG 60
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 12 TGGGACTTGGGAGGGAAGAAGATCTCGTTCCCTCTAAGCCATGAATCGTCGTAATCGTGG 71
Query 61 CTCTTCTTCTTCCGCTACTTCTAGGGTTTCGAATACTTATGGGAATCGCCAGACCTCTGA 120
||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 72 CTCTTCTTCTT---CTTCTTCTAGGGTTTCGAATACTTATGGGAACCGCCAGTTCTCTGA 128
Query 121 TAACCCGAGGACTGGATCCGGCGGCGGAGCTAATGATTCCTTACGGAGAAGATCCGATGC 180
||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||
Sbjct 129 TAACCCGAGGACTGGATCCGGCGGCGGAGTTAATGAATCCTTTCAGAGAAGATCCGATGC 188
Query 181 ACCACTCAAACGAAACAATGACGAAGACGAATC-AAACTATAAGGAAGGAGATCCTGCTG 239
||| | ||||||||||||||| |||||||||| |||| |||| || | |||||||||||
Sbjct 189 ACCGCACAAACGAAACAATGAAAAAGACGAATCAAAAC-ATAAAGACGAAGATCCTGCTG 247
Query 240 ACGTTTCCTTCATCATAGGAACTTGTTCTTCTATGTGCCCAGAGAGGGAAAGAGTCACAA 299
||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ACGTTTCATTGATTGTAGGAACTTGTTCTTCTATGTGCCCAGAGAGGGAAAGAGTCACAA 307
Query 300 GGGAACGCCTGCGTGATCTTGCAGTGTTTGAGAGGCTTTATGGAAACCCCTCAAAATCAT 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GAGAACGCCTGCGTGATCTTGCAGTGTTTGAGAGGCTTTATGGAAACCCCTCAAAATCAT 367
Query 360 CCACAGATCTAGCTGTCAAAAAGTTTTGTAGAACTCTTTCAGCAGCGGATGTTCAGGCAT 419
||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 368 CCACAGAGATAGCTGTCAAAAAGTTTTGCAGAACCCTTTCAGCGGCGGATGTTCAGGCAT 427
Query 420 CGGATGTAAGACCGCTCCCAGTTTTAGAAGAAACCCTAACATACCTTCTAAGTTTGCTTG 479
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 428 CGGATGTAAGACCGCTCCCAGTTTTAGAAGAAACCCTGAGATACCTTCTAAGTTTGCTCG 487
Query 480 ACTCCAGGGAGCACCTGTTTGAAGTGGTTCATGATTTTATTTTCGATAGGACAAGGTCTA 539
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ACTCCAAGGAGCACCCGTTTGAAGTGGTTCATGATTTTATTTTCGATAGGACAAGGTCTA 547
Query 540 TTAGACAAGATCTTAGCATCCAGAATCTAGCCAATGAGAGAGTGATCTACCTTTACGAGG 599
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 548 TTAGACAAGATCTTAGCATCCAGAATTTGGCCAATGAGAGAGTGATCTACCTTTATGAGG 607
Query 600 AAATGGTTAAATTTCATGTGATATCTCACAAGAGGCTTCAGAGTTGTAGTGGTACAAGTA 659
||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 608 AAATGGTAAAATTTCATGTCATATCTCACGAGAGGCTTCAAAGTTGTAGTGGTACAAGTA 667
Query 660 TTAGCTCAATGCATCACTTGAACATGGAGCAGCTAGCAAAAACGCTTACCTCTTTGTATA 719
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 668 TTAGCTCAATGCATCACTTGAACATGGAGCAGCTAGCAAAAACTCTTACCTCTTTGTATA 727
Query 720 ATATATATGATGCAAATAGGAAACCGGATTATATCTACGAAAATGAAGCCGAGTTCCGCT 779
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 728 ATATATATGATGCAAATAGAAAACCGGACTATATCTACGAAAATGAAGCCGAGTTCCGCT 787
Query 780 CATTCTATGTGCTGCTTCATCTCAATTCC-AGTAGTGGAGTGATGGGGGAACCGCTATCT 838
|| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 788 CACTCTATGTGCTGCTTCATCTCAAT-CCTAGTAGTGGAGTGATGGGGGAACCGCTGTCT 846
Query 839 CTATGGTTTCGCAAGTTAACTTTTGCTTTAGTAAAATCCAAGGAAATATGTTTTGTACGA 898
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 847 TTATGGTTTCGCAAGTTGACTTTTGCTTTGGTAAAATCCAAGGAAATATGTTTTGTACGA 906
Query 899 AATCTTTTAAGATTATATCGGATGGGCAATTACAAGAACTTCTTAAGTAGAACAGCTTCT 958
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AACCTTTTAAGATTATATCGGATGGGCAATTACAAGAACTTCTTAAGTAGAACAGCTTCT 966
Query 959 GAGGCGACATACTTACAGTATTGCATAAGTGAACCTTATATTAGAGAGATGCGATCAGTC 1018
|||||||||||||| ||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 967 GAGGCGACATACTTGCAGTATTGCATAAGTGAACATCATATTAGAGAGATGCGATTAGTG 1026
Query 1019 GCTGTCCAATACATAAACAATGTTTGCTACAAGCTTCAACCTTATCCTCTCTTGCGGTTA 1078
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1027 GCTGTCCAATACATAAACAATGTTTGCTACAAGCTTCAACCCTATCCTCTCTTGCGGTTA 1086
Query 1079 TCTCAGAACCTGCTGATGAAGGAGTTGGATGTTGAATCTCTATGCCATGAGTGTGGTCTT 1138
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1087 TCTCAGAACCTGAAGATGAAGGAGTTGGATGTTGAATCTTTATGCCATGAGTGTGGTCTT 1146
Query 1139 GAGACATGTACTGATCCTGATGGGTTCACTGTGTTACCTGCGAAGCAGTCAACCTTTCGT 1198
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 1147 GAGACATGTACTGATCCTGATGGGTTCACTGTTTTACCCGTGAAGCAGTCAACCTTTCGT 1206
Query 1199 AATCCAGAGGACAAGTTCAAAGTTTATGATTTGATTGGAATTGAACGGATTGAAAA-GTA 1257
| ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 1207 AGTCCAGAGGACAAGTTCAAAGTTTATGATTTGATTGGAATTGAACGGATT-AAGATGTC 1265
Query 1258 GTTTTGAACCTCTGGTTTGTTGTTTATGTGTAAATGCTTCATACTCTCTTCTTATAAGAA 1317
| ||||||||||| | |||||| | | |||||||||||||||| | |||||||
Sbjct 1266 GATTTGAACCTCTTGCATGTTGT--A-----A--TGCTTCATACTCTCTTATGATAAGAA 1316
Query 1318 GAAATTGAATTTCTAAAACACCAAAGTTATATGATCTTA 1356
|||||||||||||||||||||| ||||||||| ||||||
Sbjct 1317 GAAATTGAATTTCTAAAACACCTAAGTTATATAATCTTA 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5