BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485840
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54390.1 | Symbols: | sequence-specific DNA binding transcr... 1506 0.0
> AT3G54390.1 | Symbols: | sequence-specific DNA binding transcription
factors | chr3:20137741-20139142 REVERSE LENGTH=1341
Length=1341
Score = 1506 bits (815), Expect = 0.0
Identities = 930/985 (94%), Gaps = 10/985 (1%)
Strand=Plus/Plus
Query 167 CTTGTCTCTGTTTTAACTCACCTGAAGAAAAAATATATGGAGAACGGAGAATTTAACCAA 226
|||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 244 CTTGTCTCTGTTTTTAGTCACCTGAAGAAAAAATATATGGAGAACGGAGAATCTAACCAA 303
Query 227 GAAAATCTCAAATCTCTCAACCACGACGAATCATC-TAAGAAACCCTCTGCTTCCTCCGT 285
|||||||||||||||||||||||||||||||| | |||||| || ||||||||||||||
Sbjct 304 GAAAATCTCAAATCTCTCAACCACGACGAATC-GCTTAAGAAGCCATCTGCTTCCTCCGT 362
Query 286 CGTTGTGGATAGGTTAAAGCGTGATGAATGGAGCGAAGGAGCTGTTTCGAGTTTACTTGA 345
|||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||
Sbjct 363 CGTTGTAGATAGGTTAAAACGTGATGAATGGAGCGAAGGAGCTGTTTCGACTTTACTCGA 422
Query 346 AGCCTACGAGTCAAAATGGGTTCTCAGGAACAGAGCCAAGCTCAAGGGTCAGGACTGGGA 405
||| || |||||||||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct 423 AGCTTATGAGTCAAAATGGGTTCTCAGAAACAGAGCCAAGCTTAAGGGACAAGACTGGGA 482
Query 406 AGACGTGGCTAGACACGTGTCCTCACGCGCCACTCAAACCAAGTCTCCGAAGACTCAAAC 465
||||||||||| |||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 483 AGACGTGGCTAAACACGTGTCCTCACGCGCCACTCACACCAAGTCACCAAAGACTCAGAC 542
Query 466 ACAGTGCAAGAACAAGATCGAGTCCATGAAGAAACGGTACCGTTCTGAGTCCGCTACTGC 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TCAGTGCAAGAACAAGATCGAGTCCATGAAGAAACGGTACCGTTCTGAGTCCGCTACTGC 602
Query 526 TGATGGCTCCTCTTGGCCTCTTTATTCTCGTCTTGATCATCTCCTCCGTGGAACTCAAG- 584
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||
Sbjct 603 TGATGGCTCCTCTTGGCCTCTTTATCCTCGTCTTGATCATCTCCTACGTGGAACTC-AGC 661
Query 585 CTCAAG-CTCAGCCTCAGGCTGTTCTGCCTCTGAATTGCTCTGTTCCTCTGCTCTTACTC 643
||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CTC-AGCCTCAGCCTCAAGCTGTTCTGCCTCTGAATTGCTCTGTTCCTCTGCTCTTACTT 720
Query 644 GAGCCGCCGTCGCCTGTGGTGGCTCATCCGCCGCAGATTTCTTACGGATCCAACGGCGTC 703
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGCCGCCGTTGCCTGCGGTGGCTCATCCGCCGCAGATTTCTTACGGATCCAACGGCGTC 780
Query 704 GGCAAGATTCCTAAGGAAGATGGATTCAAGCCGGAGCAA-AAGCCGGAAAAAG-CGACGG 761
|||||||||||||||||||| ||||||||||||||| || || |||||||||| | |||
Sbjct 781 GGCAAGATTCCTAAGGAAGACGGATTCAAGCCGGAG-AACAAACCGGAAAAAGATG-CGG 838
Query 762 AGATGGACACAGACAGTAGTACGCCGGTGGTTAAAACgaaggtgagagggaagaaagtga 821
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 839 AGATGGATACAGACAGTAGTACGCCTGTGGTTAAAACGAAGGTGAGAGGGAAGAAAGTGA 898
Query 822 agagaagatataaagaagagaaggaagagaTCGCCGGAAGTATACGGTGGTTAGCGGAGG 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGAGAAGATATAAAGAAGAGAAGGAAGAGATCGCCGGAAGTATACGGTGGTTAGCGGAGG 958
Query 882 TGGtgatgagatctgagagagcaagaatggagacgatgaaagagatagagagaatgagag 941
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGTGATGAGATCAGAGAGAGCAAGAATGGAGACGATGAAAGAGATAGAGAGAATGAGAG 1018
Query 942 ctgaagctgaagctaagagaggagaaATGGATTTGAAACGAACGGAGATAATGGCGAATA 1001
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1019 CTGAAGCTGAAGCTAAGAGAGGAGAATTGGATTTGAAACGGACGGAGATAATGGCGAATA 1078
Query 1002 CTCAGCTAGAGATTGCTAGACTCTTTGCAGTTGCAGCTTCGTCTGGACAGAACAAAGGTG 1061
|||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||
Sbjct 1079 CTCAGCTAGAGATTGCTAGAATCTTTGCTGCTGCAGCTTCTTCTGGACAGAACAAAGGTG 1138
Query 1062 TTGATTCTTCATTAAGGATCGGAAGAAATTGAGTTCTGttttttttATGGGAGACTCAAA 1121
|||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1139 TTGATTCTTCATTAAGGATCGGAAGAAATTGAGTTCTGCTTTTTATATTGGAGACTCAAG 1198
Query 1122 ATGTCGTGTGTACATACCAAGTGTT 1146
|||| ||||||||||||||||||||
Sbjct 1199 ATGTTGTGTGTACATACCAAGTGTT 1223
Score = 265 bits (143), Expect = 9e-70
Identities = 164/174 (94%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 1 TTAGCTTTAAGTCACGAGTCACGACCATTGAACATGCAAGAAACGCGTGTACCCAAACTC 60
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 40 TTAGCTTTAAGTCACGAGGCACGACCATTGAACATGCGAGAAACGCGTGTACCCAAACTC 99
Query 61 ATTGGTTAGTTTTGAGACCAGCAGCGAATTCTTACACAGTTCTCATATGTTAAACTCCAT 120
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 100 ATTGGTTAGTTTTGAGAGCAGCAGCGTATTCTTACACAGTTCTCATATGTTTAACTCCAT 159
Query 121 TCACTCTCTCAAAAAGTTCCCATCTCTATCAAACGACTTGCTAAAA-CTTGTCT 173
|||||||||||||| |||||||||| ||||||| |||||||||||| ||| |||
Sbjct 160 TCACTCTCTCAAAAGGTTCCCATCTTTATCAAAAGACTTGCTAAAATCTTCTCT 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60843060540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5