BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485843
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54430.1 | Symbols: SRS6 | SHI-related sequence 6 | chr3:201... 1175 0.0
> AT3G54430.1 | Symbols: SRS6 | SHI-related sequence 6 | chr3:20147101-20148127
REVERSE LENGTH=951
Length=951
Score = 1175 bits (636), Expect = 0.0
Identities = 781/844 (93%), Gaps = 38/844 (5%)
Strand=Plus/Plus
Query 1 CTCTCTCTCTGTTTCTCACTACTCTCACTAGACTCCTCCATAGCTAAGCTCCACCTACTA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 40 CTCTCTCTCTGTTTCTCACTACTCTTACTAGACTCCTCCATAGCTAAGCTCCACCTACTA 99
Query 61 GATTAGCCTCCACGCGCTTTTA-TATTACTTCTGCCACAGTGGCAAATCCACCTTCTTCC 119
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 100 GATTAGCCTCCACGCGCTTTTATTATTACTACTGCCACAGTGGCAAATCCACCTTCTTCC 159
Query 120 CTCTCATGGCCACCACCACCACAACCATCACCATCTTCAACACCTTTCGCCGGCGTCTCA 179
||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 160 CTCTCATGG------CCACCACAACCATCATCATCTTCAACACCTTTCGCCGCCGTCTCA 213
Query 180 ATCCCACCTG---A----------T---T--CCGCCGTTGGAATCAG---TACTCCAGAC 218
|||||||||| | | | |||||||||||||||| ||||||||||
Sbjct 214 ATCCCACCTGATCACTCTTCCTCCTCCGTCGCCGCCGTTGGAATCAGTACTACTCCAGAC 273
Query 219 TACATGTTAGGTCTTCGAAACATCATTCTCTTACCTCCACCA-C--CGCAGATAACAACA 275
||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct 274 TACATGTTAGGTCTTCGAAACATCATTCTCTTATCTCCACCACCGACGCAGAT---AACA 330
Query 276 CGGCTGTCTCCTT-CTCCGGTAAACATAGCGGCGGTGGAAGACAACAACACAGTTGGAGA 334
|||| ||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 331 CGGCCATCT-CTTCCTCCGGTAAACTTCGCGGCGGTGGAAGACAACAACACAGTTGGAGA 389
Query 335 GAAAGTATGCAGAGACTGTGGAAACAGAGCAAAGAAAGAGTGTTTGTTCGAAAGGTGTAG 394
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 390 GAAAGTATGCAGAGACTGTGGAAACAGAGCAAAGAAAGAGTGTTTGTTCGAAAGATGTAG 449
Query 395 AACATGTTGTAAAAGCAGAGGATACAACTGTGTCACTCACGTGAAGAGCACGTGGATTCC 454
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 AACTTGTTGTAAAAGCAGAGGATACAACTGTGTCACTCACGTGAAGAGCACGTGGATTCC 509
Query 455 TTCTTCTGCAACTCGTTCTTCATCTTCTCCTTCTGAGAGGAAGAAGAAGCTCAAACTCGA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 510 TTCTTCTGCAACTCGTTCTTCATCTTCTCCTTCTGAGAGGAAGAAGAAGCTCAAAATCGA 569
Query 515 TAAACAGAGTTCCGCTAATGTCTCGCCGCTTCCGACAACCACTTCTCGTCAAGAGAGAAG 574
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 570 TAAACAGAGTTCCCCTAATGTCTCGCTACTTCCGACAACCACTTCTCGTCAAGAGAGAGG 629
Query 575 CTTCAAAGAGGGGTTACCGGGGAAAATTGAAGCTCCGGCAGTTTTTAAACGGACAAGAGT 634
||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 630 CTTCAGAGAGGGGTTACCGGGGAAAATTGAAGCTCCGGCGGTTTTTAAACGGACGAGAGT 689
Query 635 AACAGCGATAAGCAACAACGAGCAAGCAGAGATTGGTTATCAAGCAACTGTAACCATAAG 694
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 690 AACAGCGATAAGCAACAACGAGCAAGCAGAGATTGGTTATCAAGCAACAGTAACTATAAG 749
Query 695 TGGTCATGTCTTCAAGGGCTTTCTTCATTACTATGGTGTTGATCATAACAAAGCTTTTCC 754
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TGGTCATATCTTCAAAGGCTTTCTTCATTACTATGGTGTTGATCATAACAAAGCTTTTCC 809
Query 755 ATGTCTTTCTCAAAAATGATGAAAACTACTTCATAGGATTCTGTATATA--GTTTCTCTG 812
||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 810 ATGTCTTTCTCAAAAATGATGGAAACTACTTCATAGGATTCTGTGTATAAAGTTTCTCTG 869
Query 813 TTTT 816
||||
Sbjct 870 TTTT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5