BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485854
Length=2284
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54510.2 | Symbols: | Early-responsive to dehydration stres... 3565 0.0
> AT3G54510.2 | Symbols: | Early-responsive to dehydration stress
protein (ERD4) | chr3:20180292-20183509 FORWARD LENGTH=2475
Length=2475
Score = 3565 bits (1930), Expect = 0.0
Identities = 2105/2192 (96%), Gaps = 2/2192 (0%)
Strand=Plus/Plus
Query 1 ATGACATCATGTAACTCTGTTTCACC-TAGTCAGAGGAAAGAAAAAAGATGACGCCGGAA 59
|||||||||||| |||||||||| || ||||||||| |||||||||| |||||||| |||
Sbjct 1 ATGACATCATGTGACTCTGTTTC-CCATAGTCAGAGAAAAGAAAAAATATGACGCCAGAA 59
Query 60 AGCTTGTTAGCGTCGGCGTCGATCAACATAGGTCTCGCCGTCGTTGCACTCTGGCTCTTC 119
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 AGCTTGTTAGCGTCGGCGTCGATCAACATAGGACTCGCCGTCGTTGCACTCTGGCTCTTC 119
Query 120 TCTGTGCTTAAGAAGCAGCCCCGTAACGCCGTCGTCTACTACGCTCGCCGCCTCTCCGAT 179
|| || || |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 120 TCCGTCCTCAAGAAGCAGCCCCGTAACGCCGTCGTATACTATGCTCGCCGCCTCTCCGAT 179
Query 180 CGCCACCACCACCGTCCTCTGTCTCTACACTCTTCCCTTTGCCTCCCTCGATTCCTCCCT 239
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 180 CGCCACCACCACCGTCCTCTGTCTCTACACTCATCCCTTTGCCTCCCTCGTTTCCTTCCT 239
Query 240 TCCGTTGCGTGGATCCCACGCGCCTTCCGTGTCCCCGAGGACGAGATCCTCAGCCGCCAC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCGTTGCGTGGATCCCACGCGCCTTCCGTGTCCCCGAGGACGAGATCCTCAGCCGCCAC 299
Query 300 GGCCTTGATGCCCTCGTCCTCATCAGGCTCTTCAAATTCGGAATTAGATTCTTCTTGTTG 359
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 300 GGCCTTGATGCTCTCGTCCTCATCAGGCTCTTCAAATTCGGAATTAGATTCTTCCTGATG 359
Query 360 TGCTCGTTACTTGGAGCTTCACTGCTTCTTCCGGTTGATTACTACAATGAGTCAGATTTA 419
|| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 360 TGTTCGTTACTTGGAGCATCACTACTTCTTCCGGTTGATTATTACAATGAGTCAGATTTA 419
Query 420 CCAACACGAAAAGAGTATTCAATGGATGCGTTCACAATATCAAATATCACACGAGGTTCT 479
|| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 CCGACACGAAGAGAGTATTCAATGGATGCTTTCACAATATCAAATATCACACGAGGTTCT 479
Query 480 AACAAGTTGTGGGTGCATTTCTCATGCTTGTGGTTCATTTCATTCTATGCATTGTTTTTG 539
|||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 480 AACAAGTTATGGGTGCATTTCTCATGCTTGTGGTGCATATCATTCTATGCATTGTTTTTG 539
Query 540 TTGCATAAGGAATATAAGGAGATTCTTGTGATAAGGCTTCAGCAAATGAAAGAACTTAGA 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 TTGCATAAGGAATATAAGGAGATTCTTGTGATAAGGCTTCAACAAATGAAAGAACTTAGA 599
Query 600 CATCGTGCTGACCAGTTCACTGTTCTAGTCCGCCAAGTTCCTCTCTGCCCTGAGCATAAC 659
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 CATCGTGCTGATCAGTTCACTGTTCTTGTCCGCCAAGTTCCTCTCTGCCCTGAGCATAAC 659
Query 660 ACTCGTGGCTGCACCGTTGATCACTTCTTCTCTAAGCATCATCGCTTTAGTTATCATTCA 719
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 ACTCGTGGCTGCGCCGTTGATCACTTTTTCTCTAAGCATCATCGCTTTAGTTATCATTCA 719
Query 720 CATCAGATGTTGTATGACGGGAGAGATCTTGAATACCTTTTGGGAAAACAGAAGAAGCTT 779
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 720 CATCAGATGTTGTATGACGGGAGAGATCTTGAATACCTTTTGGGGAAGCAGAAGAAGCTT 779
Query 780 AAAAAAGAGATAGAATACAAGAGACACATAGACATACTTTCGAATGGATCACAAGAACAT 839
|| |||||| ||||| |||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 780 AAGAAAGAGCTAGAAGACAAGAGACACACAGAAATACTTTCAAATGGATCACAAGAACAC 839
Query 840 AAGCACATATCCACATCTGAAGAAAAACTTCAAGAAATTACCCATATGGTTTACCACCTT 899
||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||
Sbjct 840 AAGCAAATATCCACATCTGAAGAAAAACTTCGAGAAATTACTCATATGATTTACCACCTT 899
Query 900 CAAAGTGAAACTATGCTCAGAGAGAAGGAGTTACCTGTTGCGTTTGTCACCTTCAAATCC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CAAAGTGAAACTATGCTCAGAGAGAAGGAGTTACCTGTTGCGTTTGTCACCTTCAAATCC 959
Query 960 CGAAGAAATGCCGCGCTGGCAGCTCAAACACAGCAGCATTCAAATCCTCTAGAACTGATA 1019
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 960 CGAAGAAATGCCGCGTTGGCAGCTCAAACACAGCAGCACTCAAATCCTCTAGAACTGATA 1019
Query 1020 ACCGAAATGGCTCCTGAACCAAGAGATGTATCCTGGAGAAATCTTGCTATTCCACAAAAG 1079
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACTGAAATGGCTCCTGAACCAAGAGATGTATCCTGGAGAAATCTTGCTATTCCACAAAAG 1079
Query 1080 ATTTTGCCTCTGAACAAGATCGGAGTAATCCTTGCAGCAGCACTTCTTACAATCTTCTTT 1139
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 ATTTTGCCTCTCAACAAGATCGGAGTCATCCTTGCAGCAGCACTTCTTACAATCTTCTTT 1139
Query 1140 GCTATTCCGGTCACAGCTGTGCAGGGAATTGCAAAGTATGAGAAGCTCAAGAAATGGTTT 1199
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1140 GCTATTCCGGTCACAGCTGTCCAGGGAATTGCAAAGTATGAGAAGCTTAAGAAATGGTTT 1199
Query 1200 CCTCCAGCCATGGCTATTGAATTCATACCAGGGCTTAGCTCAGTTGTGACAGGTTACCTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCTCCAGCCATGGCTATTGAATTCATACCAGGGCTTAGCTCAGTTGTGACAGGTTACCTC 1259
Query 1260 CCAAGTGCTATACTCAAAGGTTTCATGTACATTATTCCTTTCGCTATGCTTGGACTTGCC 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1260 CCAAGTGCTATACTCAAAGGTTTCATGTACATTATTCCTTTCGCTATGCTTGGACTGGCC 1319
Query 1320 TATCTCGGCGGATCTATCTCCAAGAGTAATGAGGAGATAAAAGCTTGCAACATGGTCTTC 1379
||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1320 TATCTCGGCGGCTCTATTTCCAACAGTAAAGAGGAGATAAAAGCTTGCAACATGGTCTTC 1379
Query 1380 TATTTTCTAATGGGAAATGTTTTCTTCTTGAGTCTTATCTCTGGTTCCTTGCTAGATGAA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1380 TATTTTCTAATGGGAAATGTTTTCTTCTTGAGTCTTATCTCTGGTTCCTTGCTTGATGAA 1439
Query 1440 ATTGGCGAATATCTCACTCATCCTAGAGACATTCCTAGTCACCTTGCTGCCGCTGTTTCA 1499
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1440 ATAGGAGAATATCTCACTCATCCTAGAGACATTCCTAGTCACCTTGCTGCTGCTGTTTCA 1499
Query 1500 GCCCAGGCAGAGTTTTTTATGACATACATCTTGACAGATGGGTTGTCTGGGTTTTCTTTG 1559
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1500 GCCCAGGCAGAGTTTTTTATGACATACATCTTGACAGATGGGCTGTCTGGATTTTCTTTG 1559
Query 1560 GAGATTCTCCAATTGGGACTTATACTATTTGATATCATAAGATCCTACACTTATGGAAGA 1619
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1560 GAGATTCTTCAATTGGGACTTATACTATTTGATATCATAAGATCATACACTTATGGAAGA 1619
Query 1620 GGAAAAGAGAGAACTACTTACCTCTTTTCATTTCCATATTTCAGAGTAATCCCCACAGTT 1679
||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1620 GGAAAAGAGAGAACTCCTTACCTCTTTTCATTTCCATATTTTAGAGTTATCCCCACAGTT 1679
Query 1680 TCCTTATCGATAATGATCGGTATGATTTATGCTGTGGTCGCGCCATTGATGCTCCCTTTC 1739
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1680 TCCTTATCGATAATGATCGGTATGATTTATGCGGTGGTTGCGCCATTGATGCTCCCTTTC 1739
Query 1740 CTAGTTGGTTATTTCTGCCTTGGATACATTGTCTACTTCAATCAGATGGAGGATGTATAC 1799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1740 CTAGTTGGTTATTTCTGCCTTGGATACATTGTCTACTTCAATCAGATGGAGGATGTTTAC 1799
Query 1800 GAGACTACATATGATACTTGCGGTCGATTCTGGCCATTCATTCATCATTATATCTTTGTC 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1800 GAGACTACATATGATACTTGCGGTCGATTCTGGCCATTCATTCATCATTATATATTTGTC 1859
Query 1860 TCAATAATACTAATGCAAATCACAATGGTGGGTCTTTTTGGACTTAAGTCAAAGCCATCT 1919
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1860 TCAATAATACTAATGCAAATCACAATGGTGGGTCTTTTTGGACTTAAATCAAAGCCATCT 1919
Query 1920 GCAGCAATTGCTACAGTGCCTCTAATATTGATCACTATAGCTTATAACGAGTACTGCAAG 1979
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1920 GCAGCAATTGCTACAGTACCTCTCATATTGATCACTATAGCTTATAACGAATACTGCAAG 1979
Query 1980 ATCCGCTTCCTCCCATCATTTAAACATTTCCCTATACAGACAGCAGTTGAAATAGACGAA 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 ATCCGCTTCCTCCCATCATTTAAACATTTCCCTATACAGACAGCAGTTGAAATAGACGAA 2039
Query 2040 GAAGATGAAAAGAATGGGGAGATGGAAACACATTGTGTTGATGCTGCAACGGCATATAAC 2099
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 2040 GAAGATGAAAAGAATGGGGAGATGGAAACACATTATGTTGATGCTGCAACGGCGTATAAC 2099
Query 2100 CGGCATCAACCTTGTTTAGAGCGTGTAAGCTCAGCGGAAGCACCAACAAACCTGAGCCAA 2159
|||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 2100 CGGCATCAACCTTGCTTAGAGCGTGTAAGCTCAGCGGAATCACCAACAAACTTAAGCCAA 2159
Query 2160 CCATTGCTTGGAACGGACTCCATATGAGGCTA 2191
||||||||||| || |||||||| |||| |||
Sbjct 2160 CCATTGCTTGGGACAGACTCCATTTGAGTCTA 2191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113352830610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5