BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485861
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54570.1 | Symbols: | Plant calmodulin-binding protein-rela... 905 0.0
> AT3G54570.1 | Symbols: | Plant calmodulin-binding protein-related
| chr3:20197949-20199202 REVERSE LENGTH=1254
Length=1254
Score = 905 bits (490), Expect = 0.0
Identities = 601/652 (92%), Gaps = 17/652 (3%)
Strand=Plus/Plus
Query 1 ATGGTTCAGTGTAAGACTGCTCAAGCTTTGTTAGGGCAAGGACATGGGAGGAGCCTTGGA 60
||||||||| |||| ||||||||||||||| |||||||||||||||| ||||| ||| ||
Sbjct 1 ATGGTTCAGAGTAAAACTGCTCAAGCTTTGGTAGGGCAAGGACATGGTAGGAGGCTTAGA 60
Query 61 CCGGAGATGATGAAGAAGAGACCAAGACCTAGTAGGCTTCCTCAACCAACGACACCGGAG 120
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CCGGAGATGATAAAGAAGAGACCAAGGGCTAGTAGGCTTCCTCAACCAACGACACCGGAG 120
Query 121 AAGCAGATCGTTGCTAAAGTCACAGGCGGGTCACCTAATTATATGAAGGGAACGAGGAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCAGATCGTTGCTAAAGTCACAGGCGGGTCACCTAATTATATGAAGGGAACGAGGAGT 180
Query 181 TCAGAGGCTAGGAGACAGAGCCAAAGTGTTCAAGCTGGTTTAGACAAGAAGAGCCAGACC 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TCAGAGGCTAGAAGACAGAGCCAAAGTGTTCAAGCTGGTTTAGACAAGAAGAGCCAAACC 240
Query 241 GGTAAGAAACTCGATTCTTGCAATAGAGATAAGAAACAGAGTAGTAGTAGTAGGTCTTTG 300
||||||||||| ||||||||| |||||| |||||||||||||||||||| | ||||||
Sbjct 241 GGTAAGAAACTTGATTCTTGCTCTAGAGAAAAGAAACAGAGTAGTAGTAG--G-TCTTTG 297
Query 301 AAAAAGGGTCTGAGTTTCAAGAGAAGTGGTAGGAGTAGTCATCGTTGGGATGTGAATGCG 360
|||||||||| ||| ||||||||||||||||||| | ||| | ||||||||| ||||| |
Sbjct 298 AAAAAGGGTCAGAGCTTCAAGAGAAGTGGTAGGATTGGTCGTTGTTGGGATGCGAATGTG 357
Query 361 CATAGAGCAACTTGTTCTTCGTTTCTTAAAAACTCAAAGTTCACAGAGGATATGATGCTT 420
|||||||||||||| |||||| |||| ||||||||||| |||||||||||| ||||| ||
Sbjct 358 CATAGAGCAACTTGCTCTTCGCTTCTCAAAAACTCAAAATTCACAGAGGATCTGATGTTT 417
Query 421 ACTTCTCCTGC-TGTCTTGAAAGTCTGTCCTTATACGTATTGTTCACTCAACGCGCATCT 479
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACTTCTCCT-CATATCTTGAAAGTCTGTCCTTATACGTATTGTTCACTCAACGCGCATCT 476
Query 480 TCACCGCCAATTCCCACCTCTTCAAAGCTTTATATCCGCAAGGAGACGCTCCTTGAAGTC 539
|||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 477 TCACAGCCAATTCCCACCTCTTCTAAGCTTTATATCCGAAAGGAGACGCTCCTTGAAGTC 536
Query 540 CCATGCAGGTATAAAGATGAGTGGTGAATGTGCTGATGGTTGTGTGGAAATCTATGTTGA 599
||||||| | | || ||| |||||| |||||||||||||||||||||||||||
Sbjct 537 CCATGCA---A----G-TG-GTG---AATGTGATGATGGTTGTGTGGAAATCTATGTTGA 584
Query 600 TGAGAAGAAAGAAAATAGAAGCACTCGAGAAACTGATATCAAAGTAATCGAT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TGAGAAGAAAGAAAATAGAAGCACTCGAGAAACTGATATCAAAGTAATCGAT 636
Score = 726 bits (393), Expect = 0.0
Identities = 478/518 (92%), Gaps = 10/518 (2%)
Strand=Plus/Plus
Query 733 AACTTTGCGA-TTCTTGAACAATCAGAAAATTCAAGTGAGGATCAAGAACGTGAAGAGGA 791
|||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 742 AACTTTGC-AGTTCTTGAACAATCAGAAAATTCAAGTGAGGATCAAGAGCGTGAAGAGGG 800
Query 792 TGGTTTCTCGGATAACACAATCAACACTTTTTTATCTGAACAATTGATTATACAAGATGA 851
|||||||||| ||||||||| |||| || |||||| |||||| | |||||||||||||||
Sbjct 801 TGGTTTCTCGAATAACACAACCAACTCTCTTTTATTTGAACAGTCGATTATACAAGATGA 860
Query 852 CATCAATCTAGGGAATGCTCTTGATGAGAAGC-TGGACTCCAAGGAAACTGAAGATTGGA 910
||||| ||||||||||||| | |||||||||| | || || |||||| ||||||| ||||
Sbjct 861 CATCATTCTAGGGAATGCTGTGGATGAGAAGCAT-GAATCTAAGGAAGCTGAAGACTGGA 919
Query 911 AGGCA-GCAGATGGAGAGAAAGTGAAAGAGCGGATTAAACTTGTATCGGAAACAGAGGAA 969
||| | |||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 920 AGG-AGGCAGATGGAGAGAAAGTGAAAGAGCGGATTAAACTTGTATTGAAAACAGAGGAA 978
Query 970 ACTCTGTTATCTCTTGCCCAAAAACCCTGCAACCGAGAAGAGTGCACTGAGGATTGGAAG 1029
|||||||||| ||||| |||||||| ||||||||||||||||||| |||||||| | ||
Sbjct 979 GCTCTGTTATCACTTGCACAAAAACCTTGCAACCGAGAAGAGTGCATTGAGGATT-GTAG 1037
Query 1030 G-GATTCAACCCAAGAGAACCCAATTACATTCAAACCT-CCGTAGAGCTGAGCAGCGAAA 1087
| || |||||||||||||||||||||||||||||| || | ||||||| ||||| |||||
Sbjct 1038 GAGACTCAACCCAAGAGAACCCAATTACATTCAAA-CTACTGTAGAGCCGAGCAACGAAA 1096
Query 1088 CAGTTGATCTCAAGCATCAGGACATGGATGAGAGGAAGAACGCAGAGGAGTGGATGATTG 1147
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1097 CAGTTGATCTCAGGCATCAGGACATGGATGAGAGGAAGAAAGCAGAGGAGTGGATGATTG 1156
Query 1148 ATTATGCTCTGCAACACACCGTAAGTAAACTTGTTGTAGAAAGGAAGAAGGATGTGGCAT 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 ATTATGCTCTGCAACACACCGTAAGTAAACTTGTTGTAGAAAGGAAGAAGGATGTGGCAT 1216
Query 1208 TGCTCGTTGAGGCATTTGAAACAACAGTACCTAAATAA 1245
||||||||||||||||||||||||||||||||||||||
Sbjct 1217 TGCTCGTTGAGGCATTTGAAACAACAGTACCTAAATAA 1254
Score = 75.0 bits (40), Expect = 2e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 654 AGAGATGGTGAGCTTACTAGAAGGTGAAGGCATTGAATCATGT 696
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct 699 AGAGATAGTGAGCTTACTAGAAGGTGAAGGCATTGAATCATGT 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5