BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485867 Length=1820 Score E Sequences producing significant alignments: (Bits) Value AT3G54630.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinetocho... 2623 0.0 AT3G54625.1 | Symbols: | other RNA | chr3:20220810-20223024 FO... 2484 0.0 > AT3G54630.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink). | chr3:20221097-20223028 REVERSE LENGTH=1932 Length=1932 Score = 2623 bits (1420), Expect = 0.0 Identities = 1667/1786 (93%), Gaps = 17/1786 (1%) Strand=Plus/Plus Query 45 TTATCTGTaaaaaagc-aaaaaGAGATGAGAGGAGGAGCCACGGGAAAGAGAAGAACGAC 103 |||||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||| Sbjct 104 TTATCTGT-AAAAAGCAAAAAAGAGATGAGAGGCGGAGCCGCGGGAAAGAGAAGAACGAC 162 Query 104 GGTGGGTTTCGGCGGAGCGCCGCCGCCACCACCACCATCAATCGAGCAACACCGTCACCT 163 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 163 GGTGGGTTTCGGCGGAGCGCCGCCGCCACCTCCACCATCAATCGAGCAACAACGTCACCT 222 Query 164 CTTTAACTCAAGAGACTCCGACGCCAGTTTCGCCAGCAGCCGTCCTTCATCAATCGGTTT 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 CTTTAACTCAAGAGACTCCGACGCCAGTTTCGCCAGCAGCCGTCCTTCATCAATCGGTTT 282 Query 224 AGGCGGCC---GAGCCTCCGATGACAGATCTTCGATGATTCGATTCACCAACGCCTTTCT 280 |||||||| |||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 283 AGGCGGCCGAGGAGCCTCCGATGACAGATCTTCGATGATTCGATTCATTAACGCCTTCCT 342 Query 281 CTCCTCTCATAAC-TCTCTGATCTCTATCCGCGCTAATCCTGTTCCTTCTGTCAAAGACA 339 |||| | |||||| || | |||||||||||||| |||||||||||||||||||||||||| Sbjct 343 CTCCACACATAACTTC-CCGATCTCTATCCGCGGTAATCCTGTTCCTTCTGTCAAAGACA 401 Query 340 TCTCCGAAACCCTAAAATTCATT-CTCTCCA-AATTAGATTACCCTTGCGATTCCATCAA 397 |||||||||||||||||||| || |||| || |||||||||||||||||||||||||| Sbjct 402 TCTCCGAAACCCTAAAATTC-TTGCTCT-CAGCTTTAGATTACCCTTGCGATTCCATCAA 459 Query 398 ATGGGACGAGGATCTCGTCTTCTTCCTCAAATCGCAGAAATGTCCATTCAAAATCACTAA 457 |||||||||||||||||||||||| |||||||||||||||||||| || || ||||| || Sbjct 460 ATGGGACGAGGATCTCGTCTTCTTTCTCAAATCGCAGAAATGTCCTTTTAAGATCACCAA 519 Query 458 ATCTAGCCTCAAAGCTCCCAATACGCCTCACAATTGGCCTACTGTTCTCGCCGTTGTTCA 517 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 520 ATCTAGCCTCAAAGCTCCAAATACGCCTCACAATTGGCCTACTGTTCTCGCCGTTGTTCA 579 Query 518 CTGGTTGGTTGAGCTCGCTCGTTTCCATCAACATCTA-TCATCCAATTCCACCTCTGAAC 576 |||||| | |||||| ||||||||||||||||||||| | ||| ||||||||||| | || Sbjct 580 CTGGTTAGCTGAGCTTGCTCGTTTCCATCAACATCTAGT-ATCTAATTCCACCTCCGTAC 638 Query 577 CCGAAGCTAACTCCATGAATTTCTTCGCGATTCAAAGCTTTAGTCACTTCATTCGCGGCG 636 |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 639 CCGAAGATAACTCCATGAATTTCTTCGCGATTCAAAGCTTTGGTCACTTCATTCGCGGCG 698 Query 637 AGGATGATAAAGTTAACGAGTTAGATTCTGAATTTTTGGGTAAATTGGAAGCGGAAAAGA 696 |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| |||| Sbjct 699 AGGATGATAAGGTTAACGATTTAGATTCTCAATTTTTGGGTAAATTGGAAGCGGAGAAGA 758 Query 697 CTAGCGTCGCTGAAACTATCTCTGGTTGTGAGAAAATCTCCGGTGAATTGGAGGCTAAAC 756 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 CTAGCGTCGCTGAAACTATCTCTGGTTGTGAGAAAATCTCCGGTGAATTGGAGGCTAAAC 818 Query 757 TTGAGTCACTGAGGAAAGGTCCGTCGAAGAAAGAGTCTCTGGGGAAAGCTAAAGCCGATT 816 |||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| Sbjct 819 TTGAGTCACTGAGGAAAGGTCCTTCGAAGAAAGAGTCTCTGGAGAAAGTTAAAGCCGATT 878 Query 817 TGGAGAATGACGTGAACAAGTTCCGAACTATTGTTGCGGAATATACTGAAAAGACTCAAG 876 ||||||||||||| |||||||||||||||||||||| ||| |||||||| | || || || Sbjct 879 TGGAGAATGACGTAAACAAGTTCCGAACTATTGTTGTGGAGTATACTGATAGGAATCCAG 938 Query 877 CGCTGGAGAAAGTTGTGGAGGAGAAAGTTAAGGAGCTTAAAGCTAAGgaagaagagagag 936 || |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 939 CGATGGAGAAAGTTGTGGAGGAGAAAGCTAAGGAGCTCAAAGCTAAGGAAGAAGAGAGAG 998 Query 937 agcgaatctctgaagagaataaagagttgaagaagagTGTGGACCTTCAGAACTTTAGCG 996 |||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 999 AGCGAATCTCTGTAGAGAATAAGGAGTTGAAGAAGAGTGTGGAGCTTCAGAACTTTAGCG 1058 Query 997 CCAGAG-ATGTAGAGAGGATGAGAAGAGAGTTACAAGCTGTGGAAAGAGATGTTGCAGAG 1055 | | | ||||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct 1059 CG-GCGGATGTAAATAGGATGAGAAGAGAGTTACAAGCTGTGGAAAGAGATGTTGCGGAT 1117 Query 1056 GCTGAGGTTGCTAGAGATGGTTGGGATCTGAAAGCTTGGGAACTCAATTCACAGATTGGG 1115 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 1118 GCTGAGGTTGCTAGAGATGGTTGGGATCAGAAAGCTTGGGAACTCAATTCACAGATTAGG 1177 Query 1116 AATCAGTTTCATCAGATTCAGACACTTTCCATTGATTGTAACCAAGTTCTTAGGAGATTG 1175 ||||||||||||||||||||||||||| ||||||| || ||||||| ||| ||||||||| Sbjct 1178 AATCAGTTTCATCAGATTCAGACACTTGCCATTGACTGCAACCAAGCTCTCAGGAGATTG 1237 Query 1176 AAGCTTGATATTCAGTTCACTGTAAATGAGAGAGGGAAAACACCTGCAAAGGTGATTGGT 1235 |||||||||||||||||| |||| || ||||||||| ||||||||||| |||||| ||| Sbjct 1238 AAGCTTGATATTCAGTTCGCTGTTAACGAGAGAGGGGAAACACCTGCAGCGGTGATGGGT 1297 Query 1236 GTGGATTATAAATCTGTGGTGAAGCCAGCTCTGTGTTCGCTGTACGATGGGATTAAAGGA 1295 |||||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||||| Sbjct 1298 GTGGATTATAAATCGGTGGTGAAGCCAGCTCTGTGTTCGTTGTGCGATGGGATCAAAGGA 1357 Query 1296 AGCTTGACGGAGAAAATGGAGGAGTTGGTCACTTTACAGCAAGAGGTGTCTGAAATGGCT 1355 |||| | |||||||| ||||||| ||||||||||||||||| | ||||||||||||| Sbjct 1358 AGCTCGGCGGAGAAAGTGGAGGAATTGGTCACTTTACAGCACCATAAGTCTGAAATGGCT 1417 Query 1356 TCGAAGATCGAATCCAAAAAGAGTCTTCTTGGGTCAATTCAGTTGCAGATCAATGAACTC 1415 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 1418 TCGAAGATCGAATCCAAAAGGAGTCTTCTTGGGTCAATTCAGTTGCAGATCAATGACCTC 1477 Query 1416 GAAGAAAAGATGAAGTTGGTGAAGAAGGAAACTCAGGAGTTGACTACAAAATGTGACTTG 1475 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1478 GAAGAAAAGATGAAGTTGGTGAAGAAGGAAACTCAGGAGTTGAGTACAAAATGTGATTTG 1537 Query 1476 GAAGCGAAAACATTGGTTGAGAGTGTGAAAACGGAGGCTTTGAATCTGGAGGTTGTGGAG 1535 || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1538 GAGGCGAAAACATTGGTTGAGAGTGTGAAAGCTGAGGCTTTGAATCTGGAGGTTGTGGAG 1597 Query 1536 AAAGAAGCTGCTGAGTTTTTAAAAGCTTCGGAGGTAAGATTGCAAGAAGCAGAAAAGCAG 1595 |||||||||||||||||| |||||||||||||| | |||||||||||||||| ||| || Sbjct 1598 AAAGAAGCTGCTGAGTTTGTAAAAGCTTCGGAGCTTAGATTGCAAGAAGCAGTGAAGGAG 1657 Query 1596 AGTGAAGAGGAGGTCCAAGCATGTGCTGCACAACTATTTGCACTTATCGATTCGATATCG 1655 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1658 AGTGAAGAGGAGGTCCAAGCATGTGCTGCACAACTCTTTGCACTTATCGATTCGATATCG 1717 Query 1656 AAACAGAAAGAGTACATGGATTTGAAGATATTGGAGATCAAAACTGGTGTTGCTGATACT 1715 |||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| Sbjct 1718 AAACAGAAAGAGTACATGGATTCGAAGATATCGGAGATCAAAACCGGTGTTGCTGATACT 1777 Query 1716 GCCAGTGCTGTTTCAGAGATATATAAAGCCAACTTCAAGAAGCACCTAGGTATCTAG-GG 1774 ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| || Sbjct 1778 GCCAGTGCTGTTTCAGAGATATACAAAGCCAACTTCAAGAAGAACCTTGGTATCTAGTGG 1837 Query 1775 ATTGGCATCAACTGAGCCCAGAGATTGTTAAAAGCGTGAGTAATTC 1820 |||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 1838 -TTGGAATCAACTGAGCCAAGAGATTGTTAAAAGCGTGAGTAATTC 1882 > AT3G54625.1 | Symbols: | other RNA | chr3:20220810-20223024 FORWARD LENGTH=1890 Length=1890 Score = 2484 bits (1345), Expect = 0.0 Identities = 1577/1689 (93%), Gaps = 15/1689 (1%) Strand=Plus/Minus Query 45 TTATCTGTaaaaaagc-aaaaaGAGATGAGAGGAGGAGCCACGGGAAAGAGAAGAACGAC 103 |||||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1791 TTATCTGT-AAAAAGCAAAAAAGAGATGAGAGGCGGAGCCGCGGGAAAGAGAAGAACGAC 1733 Query 104 GGTGGGTTTCGGCGGAGCGCCGCCGCCACCACCACCATCAATCGAGCAACACCGTCACCT 163 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1732 GGTGGGTTTCGGCGGAGCGCCGCCGCCACCTCCACCATCAATCGAGCAACAACGTCACCT 1673 Query 164 CTTTAACTCAAGAGACTCCGACGCCAGTTTCGCCAGCAGCCGTCCTTCATCAATCGGTTT 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1672 CTTTAACTCAAGAGACTCCGACGCCAGTTTCGCCAGCAGCCGTCCTTCATCAATCGGTTT 1613 Query 224 AGGCGGCC---GAGCCTCCGATGACAGATCTTCGATGATTCGATTCACCAACGCCTTTCT 280 |||||||| |||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1612 AGGCGGCCGAGGAGCCTCCGATGACAGATCTTCGATGATTCGATTCATTAACGCCTTCCT 1553 Query 281 CTCCTCTCATAAC-TCTCTGATCTCTATCCGCGCTAATCCTGTTCCTTCTGTCAAAGACA 339 |||| | |||||| || | |||||||||||||| |||||||||||||||||||||||||| Sbjct 1552 CTCCACACATAACTTC-CCGATCTCTATCCGCGGTAATCCTGTTCCTTCTGTCAAAGACA 1494 Query 340 TCTCCGAAACCCTAAAATTCATT-CTCTCCA-AATTAGATTACCCTTGCGATTCCATCAA 397 |||||||||||||||||||| || |||| || |||||||||||||||||||||||||| Sbjct 1493 TCTCCGAAACCCTAAAATTC-TTGCTCT-CAGCTTTAGATTACCCTTGCGATTCCATCAA 1436 Query 398 ATGGGACGAGGATCTCGTCTTCTTCCTCAAATCGCAGAAATGTCCATTCAAAATCACTAA 457 |||||||||||||||||||||||| |||||||||||||||||||| || || ||||| || Sbjct 1435 ATGGGACGAGGATCTCGTCTTCTTTCTCAAATCGCAGAAATGTCCTTTTAAGATCACCAA 1376 Query 458 ATCTAGCCTCAAAGCTCCCAATACGCCTCACAATTGGCCTACTGTTCTCGCCGTTGTTCA 517 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1375 ATCTAGCCTCAAAGCTCCAAATACGCCTCACAATTGGCCTACTGTTCTCGCCGTTGTTCA 1316 Query 518 CTGGTTGGTTGAGCTCGCTCGTTTCCATCAACATCTA-TCATCCAATTCCACCTCTGAAC 576 |||||| | |||||| ||||||||||||||||||||| | ||| ||||||||||| | || Sbjct 1315 CTGGTTAGCTGAGCTTGCTCGTTTCCATCAACATCTAGT-ATCTAATTCCACCTCCGTAC 1257 Query 577 CCGAAGCTAACTCCATGAATTTCTTCGCGATTCAAAGCTTTAGTCACTTCATTCGCGGCG 636 |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1256 CCGAAGATAACTCCATGAATTTCTTCGCGATTCAAAGCTTTGGTCACTTCATTCGCGGCG 1197 Query 637 AGGATGATAAAGTTAACGAGTTAGATTCTGAATTTTTGGGTAAATTGGAAGCGGAAAAGA 696 |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| |||| Sbjct 1196 AGGATGATAAGGTTAACGATTTAGATTCTCAATTTTTGGGTAAATTGGAAGCGGAGAAGA 1137 Query 697 CTAGCGTCGCTGAAACTATCTCTGGTTGTGAGAAAATCTCCGGTGAATTGGAGGCTAAAC 756 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 CTAGCGTCGCTGAAACTATCTCTGGTTGTGAGAAAATCTCCGGTGAATTGGAGGCTAAAC 1077 Query 757 TTGAGTCACTGAGGAAAGGTCCGTCGAAGAAAGAGTCTCTGGGGAAAGCTAAAGCCGATT 816 |||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| Sbjct 1076 TTGAGTCACTGAGGAAAGGTCCTTCGAAGAAAGAGTCTCTGGAGAAAGTTAAAGCCGATT 1017 Query 817 TGGAGAATGACGTGAACAAGTTCCGAACTATTGTTGCGGAATATACTGAAAAGACTCAAG 876 ||||||||||||| |||||||||||||||||||||| ||| |||||||| | || || || Sbjct 1016 TGGAGAATGACGTAAACAAGTTCCGAACTATTGTTGTGGAGTATACTGATAGGAATCCAG 957 Query 877 CGCTGGAGAAAGTTGTGGAGGAGAAAGTTAAGGAGCTTAAAGCTAAGgaagaagagagag 936 || |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 956 CGATGGAGAAAGTTGTGGAGGAGAAAGCTAAGGAGCTCAAAGCTAAGGAAGAAGAGAGAG 897 Query 937 agcgaatctctgaagagaataaagagttgaagaagagTGTGGACCTTCAGAACTTTAGCG 996 |||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 896 AGCGAATCTCTGTAGAGAATAAGGAGTTGAAGAAGAGTGTGGAGCTTCAGAACTTTAGCG 837 Query 997 CCAGAG-ATGTAGAGAGGATGAGAAGAGAGTTACAAGCTGTGGAAAGAGATGTTGCAGAG 1055 | | | ||||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct 836 CG-GCGGATGTAAATAGGATGAGAAGAGAGTTACAAGCTGTGGAAAGAGATGTTGCGGAT 778 Query 1056 GCTGAGGTTGCTAGAGATGGTTGGGATCTGAAAGCTTGGGAACTCAATTCACAGATTGGG 1115 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 777 GCTGAGGTTGCTAGAGATGGTTGGGATCAGAAAGCTTGGGAACTCAATTCACAGATTAGG 718 Query 1116 AATCAGTTTCATCAGATTCAGACACTTTCCATTGATTGTAACCAAGTTCTTAGGAGATTG 1175 ||||||||||||||||||||||||||| ||||||| || ||||||| ||| ||||||||| Sbjct 717 AATCAGTTTCATCAGATTCAGACACTTGCCATTGACTGCAACCAAGCTCTCAGGAGATTG 658 Query 1176 AAGCTTGATATTCAGTTCACTGTAAATGAGAGAGGGAAAACACCTGCAAAGGTGATTGGT 1235 |||||||||||||||||| |||| || ||||||||| ||||||||||| |||||| ||| Sbjct 657 AAGCTTGATATTCAGTTCGCTGTTAACGAGAGAGGGGAAACACCTGCAGCGGTGATGGGT 598 Query 1236 GTGGATTATAAATCTGTGGTGAAGCCAGCTCTGTGTTCGCTGTACGATGGGATTAAAGGA 1295 |||||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||||| Sbjct 597 GTGGATTATAAATCGGTGGTGAAGCCAGCTCTGTGTTCGTTGTGCGATGGGATCAAAGGA 538 Query 1296 AGCTTGACGGAGAAAATGGAGGAGTTGGTCACTTTACAGCAAGAGGTGTCTGAAATGGCT 1355 |||| | |||||||| ||||||| ||||||||||||||||| | ||||||||||||| Sbjct 537 AGCTCGGCGGAGAAAGTGGAGGAATTGGTCACTTTACAGCACCATAAGTCTGAAATGGCT 478 Query 1356 TCGAAGATCGAATCCAAAAAGAGTCTTCTTGGGTCAATTCAGTTGCAGATCAATGAACTC 1415 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 477 TCGAAGATCGAATCCAAAAGGAGTCTTCTTGGGTCAATTCAGTTGCAGATCAATGACCTC 418 Query 1416 GAAGAAAAGATGAAGTTGGTGAAGAAGGAAACTCAGGAGTTGACTACAAAATGTGACTTG 1475 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 417 GAAGAAAAGATGAAGTTGGTGAAGAAGGAAACTCAGGAGTTGAGTACAAAATGTGATTTG 358 Query 1476 GAAGCGAAAACATTGGTTGAGAGTGTGAAAACGGAGGCTTTGAATCTGGAGGTTGTGGAG 1535 || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 357 GAGGCGAAAACATTGGTTGAGAGTGTGAAAGCTGAGGCTTTGAATCTGGAGGTTGTGGAG 298 Query 1536 AAAGAAGCTGCTGAGTTTTTAAAAGCTTCGGAGGTAAGATTGCAAGAAGCAGAAAAGCAG 1595 |||||||||||||||||| |||||||||||||| | |||||||||||||||| ||| || Sbjct 297 AAAGAAGCTGCTGAGTTTGTAAAAGCTTCGGAGCTTAGATTGCAAGAAGCAGTGAAGGAG 238 Query 1596 AGTGAAGAGGAGGTCCAAGCATGTGCTGCACAACTATTTGCACTTATCGATTCGATATCG 1655 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 237 AGTGAAGAGGAGGTCCAAGCATGTGCTGCACAACTCTTTGCACTTATCGATTCGATATCG 178 Query 1656 AAACAGAAAGAGTACATGGATTTGAAGATATTGGAGATCAAAACTGGTGTTGCTGATACT 1715 |||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| Sbjct 177 AAACAGAAAGAGTACATGGATTCGAAGATATCGGAGATCAAAACCGGTGTTGCTGATACT 118 Query 1716 GCCAGTGCT 1724 ||||||||| Sbjct 117 GCCAGTGCT 109 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90059777730 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5