BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485868
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54640.1 | Symbols: TSA1, TRP3 | tryptophan synthase alpha c... 1929 0.0
> AT3G54640.1 | Symbols: TSA1, TRP3 | tryptophan synthase alpha
chain | chr3:20223148-20225523 REVERSE LENGTH=1342
Length=1342
Score = 1929 bits (1044), Expect = 0.0
Identities = 1233/1319 (93%), Gaps = 34/1319 (3%)
Strand=Plus/Plus
Query 1 GATTTTTACAAACCAAAAATGGAAGATGAAAGTCAGAAGTCAAAATAGCTCGAAAATGTA 60
|||||||||||| |||| |||||||| | ||||||||||||||||||||||||| |||||
Sbjct 1 GATTTTTACAAAACAAAGATGGAAGA-GCAAGTCAGAAGTCAAAATAGCTCGAAGATGTA 59
Query 61 AGTGACGGCTCCTGAATACTCTTGGCTGGTAGATTTCACCTACCTCTTTCTTTCTTTCTT 120
||||||||| |||||||||||||||||||||||||||||||| | | || | ||| ||
Sbjct 60 AGTGACGGCGCCTGAATACTCTTGGCTGGTAGATTTCACCTA-C-C--TC-AT-TTT-TT 112
Query 121 TCATATATCTCAAACGTGGAATCGCTGTTACTCAG-TTTT-TATAT----A-AAA-A--- 169
||||||||||||||||||||||||||||||||||| |||| ||||| | ||| |
Sbjct 113 TCATATATCTCAAACGTGGAATCGCTGTTACTCAGTTTTTATATATAAAAATAAACACTC 172
Query 170 -----TCTTCAACCAAACCCATTTCCAAAA-TCCACAAAGCTTTTCCAATGGCGATTGCT 223
||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 173 GCTCTTCTTCAACCAAACTCATTTCCAAAATTCCACAAAGTTTTTCAAATGGCGATTGCT 232
Query 224 TTCAAATCCGGCGTCTTCTTCCTCCAATCCCCAAAATCCCAAATTGGATTCCGCCATGCT 283
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 233 TTCAAATCCGGCGTCTTCTTCCTCCAATCCCCAAAATCTCAAATTGGATTCCGCCA---T 289
Query 284 TCTTCTTCTCCTGATTCATCGCTTTCTTTCAAGAGATTCACTCCCATGGCTTCTCTCTCC 343
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TCTTCTCCTCCTGATTCATCGCTTTCTTTCAAGAGATTCACTCCCATGGCTTCTCTCTCC 349
Query 344 ACCTCTTCTCCTACTCTCGGTCTCGCTGATACTTTCACCCAGCTCAAAAAACAAGGCAAA 403
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 350 ACCTCTTCTCCTACTCTCGGTCTCGCTGATACTTTCACACAGCTCAAAAAACAAGGCAAA 409
Query 404 GTAGCATTCATACCGTATATCACAGCTGGTGATCCAGATCTCTCCACTACTGCTGAAGCA 463
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 410 GTAGCATTCATACCATATATCACAGCTGGTGATCCGGATCTCTCTACTACTGCTGAAGCA 469
Query 464 TTGAAAGTTCTTGACGCTTGTGGCTCTGACATAATCGAATTGGGTGTTCCTTACTCTGAT 523
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 470 TTGAAAGTTCTTGATGCTTGTGGTTCTGACATAATCGAATTGGGTGTTCCTTACTCTGAC 529
Query 524 CCTTTAGCTGATGGACCTGTTATTCAGGCTGCGGCAACAAGGTCGTTGGAGAGGGGAACC 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CCTTTAGCTGATGGACCTGTTATTCAGGCTGCGGCAACAAGGTCGTTGGAGAGGGGAACA 589
Query 584 AACCTCGATAACATCCTTGAGATGTTGGATAAGGTTGTTCCACAAATATCTTGTCCGATT 643
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 AACCTCGATAGCATCCTTGAGATGTTGGATAAGGTTGTTCCACAAATATCTTGTCCGATT 649
Query 644 TCGTTGTTCACGTATTACAACCCGATTCTTAAACGTGGATTGGGGAAGTTCATGTCTACC 703
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 650 TCGTTGTTCACGTATTACAACCCGATTCTTAAACGTGGGTTGGGGAAGTTCATGTCCAGC 709
Query 704 ATCAGAGCTGTTGGTGTACAGGGACTTGTGGTTCCCGATGTTCCTCTTGAGGAAACTGAG 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATCAGAGCTGTTGGTGTACAGGGACTTGTGGTTCCCGATGTTCCTCTTGAGGAAACTGAG 769
Query 764 ATGCTGAGAAAAGAAGCCCTCAACAACGACATTGAGCTGGTCCTACTTACTACACCAACC 823
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 770 ATGCTGAGAAAAGAAGCCCTCAACAACGACATTGAGCTGGTCCTACTCACTACACCAACC 829
Query 824 ACACCAACAGAGAGAATGAAGCGAATTGTTGACGTGTCAGAAGGATTTATTTACCTCGTG 883
|||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||| |||
Sbjct 830 ACACCAACAGAGCGAATGAAGCTAATTGTTGATGCGTCAGAAGGATTTATTTACCTTGTG 889
Query 884 AGCTCAATTGGAGTGACTGGTGCACGAGCATCTGTAAGCGGAAAGGTTCAGTCGCTCTTG 943
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 890 AGCTCAATTGGAGTGACTGGTGCACGATCATCTGTAAGCGGAAAGGTTCAGTCGCTCTTG 949
Query 944 AAGGATATCAAAGAGGCGACAGACAAGCCAGTGGCAGTCGGTTTTGGAATATCAAAGCCG 1003
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 950 AAGGATATCAAAGAGGCGACAGACAAGCCGGTGGCAGTCGGTTTTGGAATATCAAAGCCG 1009
Query 1004 GAGCATGTGAAACAGATAGCTGGATGGGGAGCTGATGGAGTGATCGTAGGCAGTGCGATG 1063
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1010 GAGCATGTGAAACAGATAGCTGGATGGGGAGCTGATGGAGTGATCGTAGGCAGTGCAATG 1069
Query 1064 GTGAAGCTATTGGGGGATGCAAAGTCGCCAACGGAAGGACTGAAGGAGCTTGAGAAACTC 1123
|| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1070 GTAAAGCTATTGGGTGATGCAAAGTCGCCAACTGAAGGACTTAAGGAGCTTGAGAAACTA 1129
Query 1124 ACCAAGTCTCTCAAATCTGCTCTTCTTTAAAACACAAACATTTGCAGACAACATCCTTTC 1183
||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1130 ACCAAGTCTCTTAAATCTGCTCTTCTTTGAAACACAAACATTTGCAGACAACATC-TTTA 1188
Query 1184 TTTT-TGTTGCTGATTATAATCAATGTGGGACAATGATGTATCAATCTTTTGTTACATTT 1242
|| |||| ||||||| ||| |||| ||||||||||| ||||||||||| |||||||
Sbjct 1189 GATTGTGTTTTTGATTATTATCGGTGTGTGACAATGATGTCTCAATCTTTTGATACATTT 1248
Query 1243 CAAGTATGATTTAATAAGTTACGGTGACTCAAGCCACAAACAAACCAGTTGCTCTGTTT 1301
||||||||||| |||||||||| ||||||||||||||| ||| |||||||||| ||||
Sbjct 1249 CAAGTATGATT-AATAAGTTACTGTGACTCAAGCCACA--CAA-CCAGTTGCTCGGTTT 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64005694875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5