BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485869
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54650.1 | Symbols: FBL17 | RNI-like superfamily protein | c... 3262 0.0
> AT3G54650.1 | Symbols: FBL17 | RNI-like superfamily protein |
chr3:20225773-20228921 REVERSE LENGTH=2052
Length=2052
Score = 3262 bits (1766), Expect = 0.0
Identities = 1906/1974 (97%), Gaps = 8/1974 (0%)
Strand=Plus/Plus
Query 1 AAATCTCACGATGCAACCTCAGCCGCATATTTCTCCGACCACCGCAACTGCCGCGATCTC 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 30 AAATCTCACGATGCAACCTCAGCCGCATATTTCTCCGAACACCGCAACTGCCGCGATCTC 89
Query 61 AGCCGCGCTTGAATCTCAGCGC-GTCCGAAAAAACCGAGGAAGTTACAATTGCGGTAGAT 119
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 90 AGCCGCGCTTGAATCTCAGCGCAGT-AGAAAAAACCGAGGAAGTTACAATTGCGGTAGAT 148
Query 120 GTGGTCAACCTAAGAAAGGCCATGTCTGTCTTTTAACTGCTCCACCTGATATTCCCACTA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GTGGTCAACCTAAGAAAGGCCATGTCTGTCTTTTAACTGCTCCACCTGATATTCCCACTA 208
Query 180 CTCCGATCGCTTCTGAGCCAGTGAGCTGTATCTCCGCCGCCGCATCTTCTTCCCGTTCTA 239
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 209 CTCCGATCGCTTCTGAGCCAGTGAGCTGCATCTCCGCCGCCGCATCTTCTTCCCGTTCTA 268
Query 240 CTGTCTTATCCTTAACGGCGGCGCCGTCGTCGCGTCAGTCTTTCACTCACTTACGCCGCG 299
|||||||||| ||||| ||||||||||| ||||| ||| | ||||||||||||||||| |
Sbjct 269 CTGTCTTATCTTTAACAGCGGCGCCGTCATCGCGACAGACCTTCACTCACTTACGCCGAG 328
Query 300 CTTTATCTTTCGATGACGTCGATGCGCGTAATTCACTGGATGAATCCGATCTGGATGTTG 359
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 329 CTTTATCGTTCGATGACGTCGATGCGCGTAATTCACTCGATGAATCCGATCTGGATGCTG 388
Query 360 CATCGGCGGATCTGGATCTACATTTGGATACGGATATTGTTCAGCCTGGGAGGTTTCATG 419
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 389 CATCGATGGATCTGGATCTACAATTGGATACGGATATTGTTCAGCCTGGGAGGTTTCATG 448
Query 420 CGGTCGGTTTATGGGAGGTGCTTAAGCGCCTGCCACCGTCGAGTTTACTGATGGCGGCTA 479
|||| ||||||||||||||||||||||| || || ||||| |||||||||||||||||||
Sbjct 449 CGGTGGGTTTATGGGAGGTGCTTAAGCGGCTACCTCCGTCTAGTTTACTGATGGCGGCTA 508
Query 480 GGGTTTGCAAAGGATGGAGAGAGACATCGAGGAAGATGTGGAAAGCGGCTGAGGAGCTTC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GGGTTTGCAAAGGATGGAGAGAGACATCGAGGAAGATGTGGAAAGCGGCTGAGGAGCTTC 568
Query 540 GGATTAGGGTTCCGGAGAGAGCTCAGATTGGATACATTGGATCTTTACTACAAAAGTGTC 599
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 569 GGATTAGGGTTCCGGAGAGAGCTCAGATTGGATACATTGGATCCTTATTACAAAAATGTC 628
Query 600 CTCGA-TTAATTAGACTCTCACTTAAAATCGAGAGTGATTTTGACGCGACGACTCTGGCT 658
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 CTCGACTT-ATTAGACTCTCACTTAAAATCGAGAGTGATTTTGACGCGACGACTCTGGCT 687
Query 659 TGCATTGCATTTTCTTGTCCTAACCTGGAGGTTTTGGAGATTACAACTTCGGGTGCAGCT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TGCATTGCATTTTCTTGTCCTAACCTGGAGGTTTTGGAGATTACAACTTCGGGTGCAGCT 747
Query 719 GTCAATAGGATTTCTGGGGATGAGCTGAGTCGGTTTGTTGCTAATAAACGAGGACTAACA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 GTCAATAGGATTTCTGGGGATGAGCTGAGTCGGTTTGTTGCTAATAAACGAGGACTAACA 807
Query 779 AGCCTTAAGATGGAAGGATGTTCCAACTTGGGAGGATTTTCCctctcttcatcaagcctc 838
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 808 AGCCTTAAGATGGAAGGATGTTCCAATTTGGGAGGATTTTCCCTCTCTTCATCAAGCCTC 867
Query 839 tccactctctggctctcggatcttcattctctctcaAAGATGATCTTCAACTGTCCAAAT 898
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 TCCACTCTTTGGCTCTCGGATCTTCATTCTCTCTCAAAGATGATCTTCAACTGTCCAAAT 927
Query 899 CTTACGGAAATATCACTTGAATTTTCTCGCCAAGAAGATGATTCAACTGATCTTGTAACA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CTTACGGAAATATCACTTGAATTTTCTCGCCAAGAAGATGATTCAACTGATCTTGTAACA 987
Query 959 ATGGTTGATGGTTTGGGAAGGACTTGCACTAGATTGCAGAACATTCATATAGCCTCTTTG 1018
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 988 ATGGTTGATGGTTTGGGAAGGACTTGCACTAGATTGCAGAACATCCATATAGCCTCTTTG 1047
Query 1019 AAGCTTTCACATACTGTTGTACTTGCTCTTACTGCTGTGAATTTCAGGTATTTGAGAATG 1078
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1048 AAGCTTTCACATACTGTTGTACTTTCTCTTACTGCTGTGAATTTCAGGTATTTGAGAATG 1107
Query 1079 CTCTCGCTAGTTCTTGGAATAGATATCACCGATGCATCTGTAGCTGCCATTTCCTCAAGT 1138
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||
Sbjct 1108 CTCTCGCTAGTTCTTGGAATAAATATCACTGATGCATCTGTAGCTGCCATTTCCTCAGGT 1167
Query 1139 TACACAAACCTTGAACTGCTTGATCTGAGTGGTTCCAGCATTACTGATACTGGCCTCGGG 1198
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 TACAAAAACCTTGAACTGCTTGATCTGAGTGGTTCCAGCATTACTGATACTGGCCTCGGG 1227
Query 1199 ATGATCTGCGATGTCTTACCTGATACACTCTCAAAATTACTTGTTGCTCTTTGTCCCAAC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 ATGATCTGCGATGTCTTACCTGATACACTCTCAAAATTACTTGTTGCTCTTTGTCCCAAC 1287
Query 1259 ATTACATCAAGTGGCATTCAATTTGCTACTGCTCAATTGCCCCTTCTTGAGCTGATGGAT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 ATTACATCAAGTGGCATTCAATTTGCTACTGCTCAATTGCCCCTTCTTGAGCTGATGGAT 1347
Query 1319 TGTGGCATGACTGTGTCTGATCCCAACTCAGATAATCCGACCATTGTAGAGAATCCAAGT 1378
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1348 TGTGGCATGACTGTCTCTGATCCCAACTCAGATAATCCGACCTTTGTAGAGAATCCAAGT 1407
Query 1379 CCACATAAAACACCAGGCTACAATCAGAAGATGTTTATCAAACATAAACGGCTGAAAAAA 1438
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1408 CCACATAAAACACCAGGCTACAATCAAAAGATGTTTATCAAACATAAACGGCTGAAGAAA 1467
Query 1439 CTCAGTTTGTGGGGATGCTCCAGTTTGGACGCTTTGTTCCTAAACTGCCCAGAGCTCATG 1498
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 CTTAGTTTGTGGGGATGCTCCAGTTTGGACGCTTTGTTCCTAAACTGCCCAGAGCTCATG 1527
Query 1499 GACTTGAACTTGAACTTATGCAGCAATTTGCATCCAGAGAGTTTGGTGCTACAATGTCCA 1558
||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 1528 GACTTGAACTTGAACTTATGCAGTAATTTGCATCCGGAGAGTCTGGTGCTACAATGTCCA 1587
Query 1559 AAGTTACAACTTGTGTACGCTTCAGGATGTCAAGACCTATTGACCGGAGCTATCCGGAAA 1618
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 1588 AAGTTACAACTTGTGTACGCATCAGGATGTCAAGGCCTATTGACCGGAGCTATCCGAAAA 1647
Query 1619 CAGGTTTCTGAAAACTT-TGCGGCTGGTGAAAACCATATGCCACGGAAACGCTTGGCTGA 1677
||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 1648 CAGGTTTCTGAAAACTTCT-CGGCTGGTGAGAACCATATGCCACGGAAACGCTTGGCTGA 1706
Query 1678 TGCGTCGAAGAGGATTCAAGCTCTACCTTCATTATACGAAGAAACAAGGGAAGATGATAA 1737
||| || || |||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 1707 TGCATCTAAAAGGATTCAAGCTTTACCTTCATTATACCAAGAAACAAGGGAAGATGGTAT 1766
Query 1738 TTATGCAGGGAAGAGAAGGAAGTTGGAGAAAGAAGTGTGTACCATTATACATTAATAATC 1797
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1767 TTATGCAGGGAAGAGAAGGAAGTTGGAGAAAGAAATGTGTACCATTATACATTAATAATC 1826
Query 1798 CTTT-ATTGGACTCATCACAATTTTTCATCTACCATATTTATATTTACTGTACTGTGTAC 1856
|||| ||||||||| |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1827 CTTTTATTGGACTCGTCACAATTTT-CGTCTACCATATTTATATTTACTGTACTGTGTAC 1885
Query 1857 ATCTGATTATGTTGGATCACGTTCTGTTCTGTTGTTTCACTTATCAACTTAACATGTTTA 1916
||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1886 ATCAGATTATGTTGGATCACGTTCTCTTCTGTTGTTTCACTTATCAACTTTACATGTTTA 1945
Query 1917 TCTTTGTTCTCCAATTGCTTCGAATAAACTGTATAATAACATTCTGTATTTGTT 1970
|| ||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1946 TCATTGTTCTCCAATTGCTTCGAATAAATTGTATGATAACATTCTGTATTTGTT 1999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97589859480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5