BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485873
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54680.1 | Symbols: | proteophosphoglycan-related | chr3:20... 931 0.0
> AT3G54680.1 | Symbols: | proteophosphoglycan-related | chr3:20244389-20246080
FORWARD LENGTH=1206
Length=1206
Score = 931 bits (504), Expect = 0.0
Identities = 702/789 (89%), Gaps = 48/789 (6%)
Strand=Plus/Plus
Query 1 AAAAACAGAAAACGAGAAAACCAGAGATTCATCAATTCATTCATTGTTTAGTTCTTCTTC 60
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 43 AAAAACAGAAAACGAGAAAACCAGAGATTCATCAATTCATTGATTCTTTAGTTCTTCTTC 102
Query 61 TTCCTTCTAACCTTAGAAACTTTTAGCT--A-C--------A-G-AG-AG---AAG---A 100
||| ||||||||||||||||| ||||| | | | | || || ||| |
Sbjct 103 GTCCGTCTAACCTTAGAAACTTATAGCTACAGCGAGAGAAGACGAAGAAGAATAAGAATA 162
Query 101 AGAAGAAAGCAAATTGAATGGCGGCAAGAGCCAACAACAAATACACCTCTATCAACTTCA 160
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 AGAAGAAAGAAAATTGAATGGCGGCAAGAGCCAACAACAAATACACCTCTATCAACTTCA 222
Query 161 ACCACATCCTTCACAAAGATCCTCcttcttcttcttcttcttcttcatcatcatcttccg 220
|||||||||||||||||||||||||||| |||||||| ||||| | || | || | |
Sbjct 223 ACCACATCCTTCACAAAGATCCTCCTTCATCTTCTTCATCTTC--C-TC--C-TC-T--G 273
Query 221 cttcttATTCCTCCGTCGCTCGTTCCAATGGCCGTATGCTCGTCCTCACCAAACCTTCCC 280
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 274 CTTCTTATTCCTCCGTCGCTCGTTCCAATGGCCGTATGCTCGTCCTCACCAAATCTTCCC 333
Query 281 CCAAACCTCTGAGATCTCCCTCCGCTGCTaccaccaccaccaccacTACGACCACGCCTC 340
|||||||||| |||||||||||||||||| || | |||||||| ||||||| | ||||
Sbjct 334 CCAAACCTCTAAGATCTCCCTCCGCTGCT-CC-C-ACCACCAC---TACGACCGCACCTC 387
Query 341 CGATCTCTCCAGCTCCGAGGATT--T-CAAATCAAGCCATCTCTGATCCAGATCCGAATC 397
| |||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 388 CTATCTCTACAGCTCCGAGGATTCCTTCAAATCAAGCCATCTCTGATCCAGATCCGAGTC 447
Query 398 AGATCTCTCTTCGTCCCTTAGGTCATACAGGACCTGGTTCCTCTCTTTCGTTCCCAATTC 457
|||||||||||||||||||||||||||||||| || ||||||| ||||| || |||||||
Sbjct 448 AGATCTCTCTTCGTCCCTTAGGTCATACAGGATCTAGTTCCTCGCTTTCTTTTCCAATTC 507
Query 458 GGAATCCTGAAATCGACAAGG-TCCCGGAGGTGCCTGCTCCTGCTCCGAGTT-CATTCTC 515
||| |||||||||| |||||| ||| |||||| |||||| ||||| ||| |||| ||
Sbjct 508 GGACTCCTGAAATCAACAAGGCTCC-GGAGGTAAATGCTCCAACTCCG-GTTTCATTGTC 565
Query 516 CCCGAAACATGATCGGTTCGTGCCGCCGCATCTTAGGCCAGGTTTCGTTCGGAAAGACGA 575
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 566 CCCGAAACCTGATCGGTTCGTGCCGCCGCATCTTAGGCCAGGTTTTGTTCGGAAAGACGA 625
Query 576 GAAACCTGGACTCGACTCTTCTCGAGTTAGAGATCCGAATC----T--GAATCAGAGATT 629
||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||
Sbjct 626 GAAACCTGGACTCAACTCTTCTCGAGTTAGAGATCCGAATCCGAATCTGAATCAGAGATT 685
Query 630 GCCTAACCAGGAACAGCCACGGCAGGGATATTTCGGGTATGGACAGACCGGACGCCCCAA 689
|||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||
Sbjct 686 GCCTAACCAGGAACAGCCACGGCAGGAATATTTCGGTTATGGACAGCCCGGACGGCCCAA 745
Query 690 ATCGGGCGGGTATGAGAGGATCTGGACAGATCCGAGAACAACCGGAAACCGACCCGGCAC 749
|||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||
Sbjct 746 ATCGGGCGGGTATGAGAGGATCCGTACGGATCCGAGAATAACCGGAAACCGACCCGGCAC 805
Query 750 CTCCGGATG 758
|||||||||
Sbjct 806 CTCCGGATG 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5