BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485874
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54690.1 | Symbols: | Sugar isomerase (SIS) family protein ... 2209 0.0
> AT3G54690.1 | Symbols: | Sugar isomerase (SIS) family protein
| chr3:20246539-20248140 FORWARD LENGTH=1430
Length=1430
Score = 2209 bits (1196), Expect = 0.0
Identities = 1295/1343 (96%), Gaps = 5/1343 (0%)
Strand=Plus/Plus
Query 1 CTCTCAGCACAAAGCAATCACAAATCAAAGCTCTCAGAGATCCAACAATGGGATCTCTTC 60
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1 CTCTCAGCACAAAGCAATCACAAATCAAAGCTTTCAGAGATCCAAAAATGGGATCTCTTC 60
Query 61 CACCGCCATCTCTCGATTTCTCATCAATCGATCACAGTTCCCTCAAAAATGGCGGATCCA 120
|||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 CACCGCCATCGCTAGATTTCTCATCAATCGATCACAATTCCCTCAAAAATGGCGGATCCA 120
Query 121 GCCACCAAGAGATCTCCCGTGATAATCTCCTCAACCTCTTCACATCTCAGCAAGATCTTC 180
|||||||||||||||| | ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 121 GCCACCAAGAGATCTCTCATGATAATCTCCTCAACCTCTTCAAATCCCAGCAAGATCTTC 180
Query 181 TCAATCACTTCTTCAAACATCTCGATCTCTCTCAAACCCTAGATTTCTCACGCATTCTCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAATCACTTCTTCAAACATCTCGATCTCTCTCAAACCCTAGATTTCTCACGCATTCTCC 240
Query 241 TTTCCACCACCGGCACCGTTTTCTTCACCGGCGTCGGTAAATCCGCTTTCGTAGCTAACA 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTCCACCACCGGTACCGTTTTCTTCACCGGCGTCGGTAAATCCGCTTTCGTAGCTAACA 300
Query 301 AGGTTTCACAGACGCTCGTTT-CTCTCAGCTTCCGTTCCTCTTTCCTCTCCCCTCTCGAT 359
||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 301 AGGTTTCACAGACGCTCGTTTCCT-TAAGCTTCCGTTCCTCTTTCCTCTCCCCTCTCGAT 359
Query 360 GCGCTTCACGGCGACATTGGCGCTCTTTCTCCACGTGATGTTCTCGTTTTCTTCAGCAAA 419
|||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 360 GCGCTTCATGGTGACATTGGCGCTCTTTCGCCACGCGATGTTCTCGTTTTCTTCAGCAAA 419
Query 420 TCTGGCGCCACCGAGGAGCTTCTCCGTCTTGTCCCTTGCGCTAGAGCTAAAGGAGCCTTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTGGCGCCACCGAGGAGCTTCTCCGTCTTGTCCCTTGCGCTAGAGCTAAAGGAGCCTTT 479
Query 480 CTGGTGTCTCTTACCTCTGTTTCTGGGAATCCACTCGCTGGAGTTTGTGATATGAATGTG 539
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 CTGGTGTCTCTTACCTCTGTTTCTGGGAATCCACTCGCTGGTGTTTGTGATATGAATGTG 539
Query 540 CATTTGCCGCTTCTGAGAGAATTGTGTCCGTTTAATCTCGCTCCGGTGACTTCTACGGCG 599
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CATTTACCTCTTCAGAGAGAATTGTGTCCGTTTAATCTCGCTCCGGTGACTTCTACGGCG 599
Query 600 ATTCAGATGGTGTTTGGTGATACCATCGCCGTTGCTCTCATGGCGGCTAAAAATCTCTCC 659
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 600 ATTCAGATGGTGTTTGGTGATACCATTGCCGTTGCTCTCATGGCGGCTAGAAATCTCTCC 659
Query 660 AAGGAAGAGTATGCAGCTAATCATCCCGCCGGCAGAATCGGCAAGAGCTTAATCTTCAAG 719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 AAGGAAGAGTATGCAGCTAATCATCCCGCCGGTAGAATCGGCAAGAGCTTAATCTTCAAG 719
Query 720 GTGAAAGATGTTATGAAAAAGCAAGAAGAGCTTCCTGTGTGCAAAGAAGGAGACTTGATA 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 GTGAAAGATGTTATGAAAAAGCAAGAAGAGCTTCCTGTGTGTAAAGAAGGAGACTTGATA 779
Query 780 ATGGATCAATTAGTGGAGCTAACCAGCAAAGGATGTGGTTGTTTGCTTGTGGTTGATGAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATGGATCAATTAGTGGAGCTAACCAGCAAAGGATGTGGTTGTTTGCTTGTGGTTGATGAA 839
Query 840 CATTAC-CGCTTGATCGGTACATTCACAGATGGAGATCTTCGTCGGACTCTCAAGGCTAG 898
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATT-CTCGTTTGATCGGTACATTCACAGATGGAGATCTTCGTCGGACTCTCAAGGCTAG 898
Query 899 TGGAGAAGCAATCTTCAAACTCAGTGTTGGAGAAATGTGCAACAGGAAGCCGAGGACAAT 958
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGGAGAAGCAATATTCAAACTCAGTGTTGGAGAAATGTGCAACAGGAAGCCGAGGACAAT 958
Query 959 TGGACCGGAAACAATGGCTGTTGAAGCTATGAAGAAAATGGAATCACCGCCATCACCTGT 1018
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 959 TGGACCGGAAACAATGGCAGTTGAAGCTATGAAGAAGATGGAATCACCGCCATCGCCTGT 1018
Query 1019 ACAGTTTCTACCGGTGGTCAATGAAGACAACACCTTGATTGGAATTGTAACATTGCATGG 1078
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1019 ACAGTTTCTACCAGTGGTCAATGAAGACAACACATTGATTGGAATTGTAACATTGCATGG 1078
Query 1079 TTTAGTTTCAGCTGGTCTCTAAACACAAAGGTGCCTCTATATCGAGTTTTATATAGTTGA 1138
||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 1079 TTTGGTTTCAGCTGGTCTCTGAACACGAAGGTGCCTCTATATTGAGTTTTATATAGTTGA 1138
Query 1139 TTCTTTTACAGAAACCCATATCAAGAATATTGGTGTAATTTGATTGAAATTCACAGCCAG 1198
|||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |||||
Sbjct 1139 TTCTTTTACAGAAACCCAAATCGAGAATATTGGTGTAATTTGATTGATTTTCACCGCCAG 1198
Query 1199 TGAATTGTATTGTGTCTAGTAGTACTTCATGTATTGTCCATCGTTTACTCAAAGATATGT 1258
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1199 TGAATTGTATTGTGTCTAGTAGTACTTCATGTATTGTCCATCATTTACTCAAAGATGTGT 1258
Query 1259 ATAGAGTATAAGAAGATTTCTTGTATCTTTGTTCTGCCTTACTTTCATTTTCTTCTACTC 1318
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1259 ATAGAGTATAAGAAGATTTCTTGTATCTTTGTCCTGCCTTACCTTCATTTTCTTCTACTC 1318
Query 1319 TTGCTTTCATTTTTGCCTT-AAA 1340
||||||||||||||||||| |||
Sbjct 1319 TTGCTTTCATTTTTGCCTTCAAA 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65963516130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5