BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485875
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54700.1 | Symbols: PHT1;7 | phosphate transporter 1;7 | chr... 2483 0.0
AT2G38940.1 | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;... 1315 0.0
> AT3G54700.1 | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248425-20250070
REVERSE LENGTH=1646
Length=1646
Score = 2483 bits (1344), Expect = 0.0
Identities = 1528/1617 (94%), Gaps = 12/1617 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGGAGATCAACTAAACGTGCTAAACGCACTCGACGTCGCCAAAACACAGTGGTAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1 ATGGCAGGAGATCAACTAAACGTGCTAAACGCACTCGACGTCGCCAAAACGCAATGGTAC 60
Query 61 CATTTCACTGCGATTATCATCGCCGGAATGGGATTCTTCACCGACGCTTACGACCTTTTT 120
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATTTCACGGCGATTATAATCGCCGGAATGGGATTCTTCACCGACGCTTACGACCTTTTT 120
Query 121 TGTATCTCCCTCGTCACTAAGCTTCTTGGCCGCATTTACTACCACGTGGACGG-TGCGGA 179
|||||||| |||||||| |||||||||||||| |||||||| ||||||||||| | | ||
Sbjct 121 TGTATCTCACTCGTCACAAAGCTTCTTGGCCGTATTTACTATCACGTGGACGGCT-CAGA 179
Query 180 GAAGCCAGGAACGCTGCCTCCAAACGTCTCGGCCGCTGTTAATGGCGTCGCCTTCTGCGG 239
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 180 GAAGCCAGGAACGCTGCCACCAAACGTCTCAGCCGCTGTTAATGGAGTCGCCTTCTGCGG 239
Query 240 TACACTCGCCGGCCAGCTCTTCTTTGGCTGGCTCGGCGACAAGCTTGGGAGGAAAAAAGT 299
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TACACTCGCAGGCCAGCTCTTCTTTGGCTGGCTCGGTGACAAGCTTGGGAGGAAAAAAGT 299
Query 300 TTACGGTATGACCCTCATGGTCATGGTCCTTTGTTCCATCGCCTCGGGTCTATCCTTTGG 359
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 300 TTACGGTATGACCCTCATGGTCATGGTTCTTTGTTCCATCGCTTCGGGTCTATCCTTTGG 359
Query 360 GAGTGACCCGAAAACGGTGATGACTACGCTCTGTTTCTTCCGGTTCTGGCTTGGTTTTGG 419
|||| |||| ||||| ||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 360 GAGTAACCCAAAAACAGTGATGACTACACTATGTTTCTTCCGGTTCTGGCTTGGTTTCGG 419
Query 420 CATAGGAGGTGATTATCCGTTATCTGCCACGATTATGTCTGAATACGCCAATAAAAAGAC 479
||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 420 CATTGGTGGTGATTATCCGTTATCCGCCACGATTATGTCTGAATACGCTAATAAAAAGAC 479
Query 480 CCGCGGTGCGTTTATAGCAGCGGTTTTTGCTATGCAAGGGTTTGGAATCTTGA-CGGGGG 538
||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 480 CCGTGGTGCGTTTATAGCCGCCGTTTTTGCTATGCAAGGGTTTGGAATCTTGACCGGGGG 539
Query 539 GTATTTTTGCCATCATCGTGGCTGCCGCTTTCGAGGCTAAGTTTCCGGCTCCTATCTAT- 597
| |||||||||||||||||| ||||||||||||||||||| ||||| ||||| | ||||
Sbjct 540 G-ATTTTTGCCATCATCGTGTCTGCCGCTTTCGAGGCTAAATTTCCAGCTCCAACCTATC 598
Query 598 AAAGTTGATGCCTTGGCATCCACAGTTCCCCAAGCGGATTACGTGTGGCGGATCATTCTC 657
||| | ||||||||||||||||| ||||| || |||||||| |||||||||||||| ||
Sbjct 599 AAA-TAGATGCCTTGGCATCCACGGTTCCTCAGGCGGATTATGTGTGGCGGATCATACTG 657
Query 658 ATGGTGGGTGCTTTGCCTGCCGCAATGACGTATTACTCGAGGTCGAAGATGCCTGAGACC 717
|||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct 658 ATGGTGGGTGCTTTGCCTGCAGCGATGACGTATTACTCAAGGTCCAAGATGCCTGAGACT 717
Query 718 GCCCGGTACACGGCTCTTGTGGCCAAGGATGCGAAACTAGCGGCTTCAAACATGTCTAAG 777
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 718 GCCCGGTACACGGCTCTTGTGGCCAAGGACGCGAAACTAGCGGCTTCAAACATGTCTAAG 777
Query 778 GTTTTGCAAGTGGAGATCGAAGCAGAGCAGCAGAGAAGTGAAGATAAGTCCAATTCCTTT 837
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 778 GTTTTGCAAGTGGAGATCGAAGCAGAGCAGCAGGGAACTGAAGATAAGTCCAATTCCTTT 837
Query 838 GGCTTGTTTTCCAAGGAATTCATGAAACGTCATGGCCTTCATTTGCTCGGAACCACAAGC 897
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 838 GGCTTGTTTTCCAAGGAATTCATGAAACGCCATGGCCTTCATTTGCTAGGAACTACAAGC 897
Query 898 ACATGGTTCCTACTCGACATCGCCTTCTACAGCCAGAACCTTTTCCAGAAAGATATTTTC 957
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 898 ACATGGTTCCTACTCGACATCGCCTTCTACAGTCAGAACCTATTCCAGAAAGATATTTTC 957
Query 958 AGCGCGATCGGATGGATTCCTCCGGCTCAGACCATGAACGCGATTCAAGAGGTTTTCAAG 1017
||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 958 AGCGCAATCGGATGGATCCCTCCGGCTCAGACAATGAACGCAATTCAAGAGGTTTTCAAG 1017
Query 1018 ATTGCACGTGCGCAAACCCTAATCGCCTTGTGCAGCACGGTACCCGGTTACTGGTTCACA 1077
||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1018 ATTGCACGTGCACAAACCCTAATCGCCTTGTGTAGCACGGTACCTGGTTACTGGTTCACA 1077
Query 1078 GTGGCCTTCATCGACGTCATAGGTAGATTTGCGATACAGATGATGGGTTTCTTCTTCATG 1137
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1078 GTGGCCTTTATTGACGTCATTGGTAGATTTGCGATACAGATGATGGGTTTCTTCTTTATG 1137
Query 1138 ACCGTCTTTATGTTCGCTCTCGCCATTCCTTACGACCATTGGACTCACAAGGAGAACAGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACCGTCTTTATGTTCGCTCTCGCCATTCCTTACGACCATTGGACTCACAAGGAGAACAGA 1197
Query 1198 ATCGGATTCGTGGCTATGTACTCTCTAACATTCTTCTTCGCCAACTTTGGACCCAATGCT 1257
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1198 ATCGGATTCGTTGCTATGTACTCTCTAACATTCTTCTTCGCCAACTTTGGACCTAATGCA 1257
Query 1258 ACTACCTTCGTTGTGCCGGCTGAGATTTTCCCGGCTAGGTTTAGATCAACCTGTCATGGA 1317
|| || ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1258 ACAACTTTCGTTGTGCCCGCTGAGATCTTCCCGGCTAGGTTTAGATCAACCTGCCATGGA 1317
Query 1318 ATTTCCGCGGCTTCTGGAAAGTTGGGAGCAATGGTTGGTGCGTTTGGGTTCTTGTACTTA 1377
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1318 ATTTCCGCGGCTTCTGGAAAATTAGGAGCAATGGTTGGTGCGTTTGGGTTCTTGTACTTA 1377
Query 1378 GCACAAAGTCCTGACAAGACCAAGACAGAGCATGGATATCCTCCAGGCATTGGAGTCAAG 1437
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1378 GCACAAAGTCCTGACAAGACCAAGACAGAGCATGGATATCCTCCAGGTATTGGAGTCAAG 1437
Query 1438 AACTCGCTCATTGTTTTGGGTGTGGTTAATCTTTTGGGGATGGTTTTTACACTGTTGGTT 1497
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AACTCCCTCATTGTTTTGGGTGTGGTTAATCTTTTGGGGATGGTTTTTACACTGTTGGTT 1497
Query 1498 CCTGAATCTAAAGGCAAGTCTCTCGAGGAAATGTCCGGTGAGAACGAACAAAATGATGAA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CCTGAATCTAAAGGCAAGTCTCTCGAGGAAATGTCCGGTGAGAACGAACAAAATGATGAA 1557
Query 1558 AGCAGCAGCA--A-CAACAACA---GTAACAACGCAGTGTCAACTGCATAGAGAATT 1608
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1558 AGCAGCAGCAGCAGCAACAACAACAGTAACAACGCAGTGTCAACTGCATAGAGAATT 1614
> AT2G38940.1 | Symbols: ATPT2, PHT1;4 | phosphate transporter
1;4 | chr2:16257228-16260225 FORWARD LENGTH=1900
Length=1900
Score = 1315 bits (712), Expect = 0.0
Identities = 1309/1594 (82%), Gaps = 54/1594 (3%)
Strand=Plus/Plus
Query 1 ATGGC-AGGAGATCAACTA-AACGTGCTAAACGCACTCGACGTCGCCAAAACACAGTGGT 58
||||| ||| || ||| || || ||| | || ||||| ||||| ||||| || || ||||
Sbjct 175 ATGGCAAGG-GAACAATTACAA-GTGTTGAATGCACTTGACGTGGCCAAGACGCAATGGT 232
Query 59 ACCATTTCACTGCGATTATCATCGCCGGAATGGGATTCTTCACCGACGCTTACGACCTTT 118
|||||||||| ||||| || ||||||||||||||||||||||| || |||||||| || |
Sbjct 233 ACCATTTCACGGCGATCATAATCGCCGGAATGGGATTCTTCACTGATGCTTACGATCTCT 292
Query 119 TTTGTATCTCCCTCGTCACTAAGCTTCTTGGCCGCATTTACTACCACGTGGACGGTGCGG 178
|||| ||||| ||||| || ||||| || || || ||||| ||||||||||| || ||
Sbjct 293 TTTGCATCTCTCTCGTAACGAAGCTCCTCGGTCGTATTTATTACCACGTGGAAGGCGCAC 352
Query 179 AGAAGCCAGGAACGCTGCCTCCAAACGTCTCGGCCGCTGTTAATGGCGTCGCCTTCTGCG 238
| ||||| || || || ||||| |||||| | ||||| || |||||||| |||||||| |
Sbjct 353 AAAAGCCTGGGACTCTCCCTCCCAACGTCGCAGCCGCCGTCAATGGCGTTGCCTTCTGTG 412
Query 239 GTACACTCGCCGGCCAGCTCTTCTTT-GGCTGGCTCGGCGACAAGCTTGGGAGGAAAAAA 297
| || |||||||| |||||||| ||| || ||||| || || ||||| |||||||| |||
Sbjct 413 GGACTCTCGCCGGTCAGCTCTT-TTTCGGGTGGCTTGGTGATAAGCTCGGGAGGAAGAAA 471
Query 298 GTTTACGGTATGACCCTCATGGTCATGGTCCTTTGTTCCATCGCCTCGGGTCTATCCTTT 357
|||||||||||||| | |||||||||||||||||||| || ||||| ||||| | ||||
Sbjct 472 GTTTACGGTATGACGTTGATGGTCATGGTCCTTTGTTCAATAGCCTCTGGTCTCT-CTTT 530
Query 358 GGGA-GTGACCCGAAAA-CGGTGATGACTACGCTCTGTTTCTTCCGGTTCTGGCTTGGTT 415
||| ||| || |||| | |||||| | ||||||||||| || ||||| |||||||| |
Sbjct 531 CGGACATGAGCC-AAAAGCTGTGATGGCCACGCTCTGTTTTTTTCGGTTTTGGCTTGGAT 589
Query 416 TTGGCATAGGAGGTGATTATCCGTTATCTGCCACGATTATGTCTGAATACGCCAATAAAA 475
||||||| || ||||| || || ||||| || || || ||||||||||| || || || |
Sbjct 590 TTGGCATCGGTGGTGACTACCCTTTATCCGCAACCATCATGTCTGAATATGCGAACAAGA 649
Query 476 AGACCCGCGGTGCGTTTATAGCAGCGGTTTTTGCTATGCAAGGGTTTGGAATCTTGACGG 535
|||| ||||| || ||| | | ||||||||||||||||||||||| |||||| || | |
Sbjct 650 AGACTCGCGGAGCCTTTGTCTCTGCGGTTTTTGCTATGCAAGGGTTCGGAATCATGGCTG 709
Query 536 GGGGTATTTTTGCCATCAT-CGTGGCTGCCGCTTTCGAGGCTAAGTTTCCGGCTCCTATC 594
| |||||||| || || || | || | ||||| || ||||||||||| | || |
Sbjct 710 GTGGTATTTTCGCTATTATAATTTCCT-CTGCTTTTGAAGCTAAGTTTCCATCCCCGGCC 768
Query 595 TATAAAGTTGATGCCTTGGCATCCACAG-TTCCCCAAGCGGATTACGTGTGGCGGATCAT 653
||| | ||||||||||| |||||| | |||| ||||| |||| || |||||||| ||
Sbjct 769 TATGCGGATGATGCCTTGGGATCCAC-GATTCCTCAAGCTGATTTGGTATGGCGGATAAT 827
Query 654 TCTCATGG-TGGGTGCTTTGCCTGCCGCAATGACGTATTACTCGAGGTCGAAGATGCCTG 712
|| |||| | |||||| | ||||| || |||||||||||||| ||||||||||||||||
Sbjct 828 CCTGATGGCT-GGTGCTATCCCTGCGGCTATGACGTATTACTCAAGGTCGAAGATGCCTG 886
Query 713 AGACCGCCCGGTACACGGCTCTT-GTGGCCAAGGATGCGAAA-CTA-GCGGCTTCAAACA 769
||||||| ||||||||||| || || || ||||| || ||| | | || ||||| |||
Sbjct 887 AGACCGCAAGGTACACGGCT-TTGGTTGCTAAGGACGC-AAAGC-AGGCAGCTTCGGACA 943
Query 770 TGTCTAAGGTTTTGCAAGTGGAGATCGAAG-CAGAGCAGCAG--A---G-A-AG---T-G 817
||||||||||| ||||||||||||| | || |||| || ||| | | | || |
Sbjct 944 TGTCTAAGGTTCTGCAAGTGGAGATAG-AGCCAGAACAACAGAAATTGGAAGAGATCTCA 1002
Query 818 AA-GATAAGTCCAATTCCTTTGGCTTGTTTTCCAAGGAATTCATGAAACGTCATGGCCTT 876
|| || |||||||| ||||||| ||||| || ||||||||||||| || ||||| |||
Sbjct 1003 AAGGAGAAGTCCAAGGCCTTTGGATTGTTCTCAAAGGAATTCATGAGTCGCCATGGGCTT 1062
Query 877 CATTTGCTCGGAACCACAAGC-ACATGGTTCCTACTCGACATCGCCTTCTACAGCCAGAA 935
|||||||| || || || | | ||||||||||| |||||||| || |||||||| || ||
Sbjct 1063 CATTTGCTAGGCACTAC-ATCGACATGGTTCCTTCTCGACATTGCTTTCTACAGTCAAAA 1121
Query 936 CCTTTTCCAGAAA-GATATTTTCAGCGCGATCGGATGGATTCCTCCGGCTCAGACCATGA 994
||||||||| ||| |||||||||||||||||||||||||||||||| || || | |||||
Sbjct 1122 CCTTTTCCA-AAAGGATATTTTCAGCGCGATCGGATGGATTCCTCCCGCGCAAAGCATGA 1180
Query 995 ACGCGATTCAAGAGGTTTTCAAGATTGCACGTGCGCAAACCCTAATCGCCTTGTGCAGCA 1054
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 1181 ACGCAATTCAAGAGGTTTTCAAGATTGCCCGTGCGCAAACGCTAATCGCCTTGTGTAGCA 1240
Query 1055 CGGTACCCGGTTACTGGTTCACAGTGGCCTTCATCGACGTCATAGGTAGATTTGCGATAC 1114
||||||| ||||||||||||||||| || |||||||||||||| || ||||||||||| |
Sbjct 1241 CGGTACCTGGTTACTGGTTCACAGTTGCGTTCATCGACGTCATTGGAAGATTTGCGATTC 1300
Query 1115 AGATGATGGGTTTCTTCTTCATGACCGTCTTTATGTTCGCTCTCGCCATTCCTTACGACC 1174
|||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||| |||
Sbjct 1301 AGATGATGGGTTTCTTTTTCATGACGGTCTTTATGTTTGCTCTGGCTATTCCTTACAACC 1360
Query 1175 ATTGGACTCACAAGGAGAACAGAATCGGATTCGTGG-CTATGTACTC-TCTAACATTCTT 1232
| |||||||||||||||||| |||||||||| || | |||||||| | ||||||||||
Sbjct 1361 ACTGGACTCACAAGGAGAACCGAATCGGATTTGTTATC-ATGTACTCGT-TAACATTCTT 1418
Query 1233 CTTCGCCAACTTTGGACCCAATGCTACTACCTTCGTTGTGCCGGCTGAGATTTTCCCGGC 1292
|||||||||||||||||||||||||| ||||||||||||||||| || || ||||| ||
Sbjct 1419 TTTCGCCAACTTTGGACCCAATGCTACAACCTTCGTTGTGCCGGCCGAAATCTTCCCAGC 1478
Query 1293 TAGGTTTAGATCAACCTGTCATGGAATTTCCGCGGCTTCTGGAAAGTTGGGAGCAATGGT 1352
||||| ||||||||||| || || || || || || || ||||| || |||||||||||
Sbjct 1479 CAGGTTCAGATCAACCTGCCACGGTATCTCTGCAGCATCAGGAAAATTAGGAGCAATGGT 1538
Query 1353 TGGTGCGTTTGGGTTCTTGTACTTAGCACA-AAGTCCTGACAAG-ACCAAGACAGA-GCA 1409
||||||||| |||||||||||||| || || || || |||||| || ||||| || |||
Sbjct 1539 TGGTGCGTTCGGGTTCTTGTACTTGGCTCAGAAC-CCAGACAAGGAC-AAGACCGACGCA 1596
Query 1410 TGGATATCCTCCAGGCATTGGAGTCAAGAACTCGCTCATTGTTTTGGGTGTGGTTAATCT 1469
||||| |||||||| ||||| |||| ||||||||| ||||| |||||||| ||||| ||
Sbjct 1597 -GGATACCCTCCAGGGATTGGGGTCAGGAACTCGCTTATTGTGTTGGGTGTAGTTAA-CT 1654
Query 1470 T-TTGGGGATGGTTTTTACACTGTTGGTTCCTGAATCTAAAGGCAAGTCTCTCGAGGAAA 1528
| || || || | || || | ||||| |||||||||||||| ||||| ||||||||||
Sbjct 1655 TCTTAGGTATCCTCTTCACTTTCTTGGTACCTGAATCTAAAGGTAAGTCACTCGAGGAAA 1714
Query 1529 TGTCCGGTGAGAACGAACAAAATGATGAA-AGCA 1561
|||||||||| || ||| | ||||| ||| ||||
Sbjct 1715 TGTCCGGTGAAAATGAAGACAATGA-GAATAGCA 1747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5