BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485876
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54710.1 | Symbols: ATCDT1B, CDT1B, CDT1 | homolog of yeast ... 2213 0.0
> AT3G54710.1 | Symbols: ATCDT1B, CDT1B, CDT1 | homolog of yeast
CDT1 B homolog of yeast CDT1 B | chr3:20251841-20254199 FORWARD
LENGTH=1673
Length=1673
Score = 2213 bits (1198), Expect = 0.0
Identities = 1485/1617 (92%), Gaps = 45/1617 (3%)
Strand=Plus/Plus
Query 1 TCACTTCCCTAATCTCTC-TTTCTA-CAATGAGCTCGTCGTCTAAAATCGAATCAGAGAA 58
|||||||||||||||||| |||| | |||||||||||||||||||||| || ||||||||
Sbjct 18 TCACTTCCCTAATCTCTCTTTTC-AGCAATGAGCTCGTCGTCTAAAATTGATTCAGAGAA 76
Query 59 GCCAGTTATGGTGTCGGAGTCACTGTTTTCTACTAAGACTCCTAACAAAACCGTTAAAAG 118
|||||||||||| || |||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 77 GCCAGTTATGGTTTCCGAGTCACTATTTTCTACCAAGACTCCTATCAAAACCGTTAAAAG 136
Query 119 GCAGATCTTTTCTTCGTCCCCAAAACCTGAATTTGTTGTAAAATTACCTGAAAGGTTCGA 178
|||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||||
Sbjct 137 GCAGATCTTTTCTTCGTCCCCAAAACCTGAATCTGTTATAAAATTGCCCGAAAGGTTCGA 196
Query 179 GATTTTGGAGGTATTTTTCAATGGGTTGGATACTGCAATTAGGTTACTTAAATTAAAGGG 238
||||||||||| |||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 197 GATTTTGGAGGAATTTTTCAATGGTTTGGATACTGCAATTAGGCTGCTTAAATTAAAGGG 256
Query 239 TTCGCCAACGACATACGCTAATATATGTCCCAAGATCGAGTATCTTACTAATCGGATCTT 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TTCGTCAACGACATACGCTAATATATGTCCCAAGATCGAGTATCTTACTAATCGGATCTT 316
Query 299 CTCGTATGATCATTTGGCTCAGATGAAGCATATTTATCCGGAAGCCATTGAACTAAAGAG 358
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 317 CTCGTATGATCATTTGGCTCAGATGAAGCATATTTATCCGGAAGCTATTGAACTAAAGAG 376
Query 359 AGTTTTGAAGTATGTTGAAGACACTTGTTGTATGAAACCCAGTCTTCATATTAGCTTAAA 418
||||||||||| ||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 377 AGTTTTGAAGTTTGTTGAAGACACTTGTTGTATGAAACCTAGGCTTCATATTAAATTAAA 436
Query 419 CACCGATGCAATTGTACTTGACGATACAATTTGTGGAACTAAATACATGGAACTTAGGAA 478
||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 437 TACCGATGCAATTGTAGTTGAGGATACCATTTGTGGAACTAAATACATGGAACTTAGAAA 496
Query 479 GGT-TTTCCACTCAAAGCTTGTAGATTTTTACAAAGCTCATCCTAAGGACGAAGTTCCGA 537
||| |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 497 GGTGTTTC-ACTCAAAGCTTGTAGATTTTCGCAAAGCTCATCCTAAGGACGAAATTCCGA 555
Query 538 AAGAACTGCTTCCTGAACCGTTCAATTCCCCAAAAAGGGATAGTTATTCAGGTATAGTAA 597
||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 556 AAGAACTGCTTCCTGAACCATTCAATTCTCCTCAAAGGGATAGTTATTCAGGTATAGTAA 615
Query 598 GTGTAGGCTTAGGAGAACCTAAACTTGAAGTTGGAAGGTTTGATGTTCATATGGAGGAGA 657
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 616 GCGTAGGCTTAGGAGAACCTAAACTTGAAGTTGGAGGGTTTGATGTTCATATGGAGGAGA 675
Query 658 TAGAGCAAGAAGAACAAGATGCTAACAAAG-CAATGCCAGATTCTACTTTGTCACACATA 716
||||||||||||||||||||| |||||||| || | || |||||||||||||||||||||
Sbjct 676 TAGAGCAAGAAGAACAAGATGTTAACAAAGTCATT-CCTGATTCTACTTTGTCACACATA 734
Query 717 GAATCCAGAATAGTTGAAATCCCAGTCAATGATTCATCTACTCCCTCCAAAGACTTATCC 776
||||| ||||||||||||| ||||||||| |||| ||| ||||||||||||||||| |||
Sbjct 735 GAATCAAGAATAGTTGAAACCCCAGTCAAAGATTTATCCACTCCCTCCAAAGACTTGTCC 794
Query 777 ACACCAATCCGTCTCATGAGTGCTACACCGACGTTGCAGCTATCTAAAAGATGTATTGAG 836
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ACGCCAATCCGGCTCATGAGTGCTACACCGACGTTGCAGCTATCTAAAAGATGTATTGAG 854
Query 837 TTGACTCCAGAGGGTGGTGATGATAACTCTGTTAGATCAACAAATAGTCTGGCAAGGGGT 896
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 855 TTGACTCCAGAGGGTGGTGATGATAACTCTCTTAGATCAACAAATAGTCTAGCAAGGGGT 914
Query 897 CCATCTCGCTGTCTGAATTTTGATACTCTTGAGGAAGATGCAATTGTGAAAGATGACATT 956
||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 915 CCATCTCGCAGTCTGAATTTTGATACTTTTGAGGAAGATGCAATTGAGAAAGATGATATT 974
Query 957 GGTAACGAATCTGCTGAT---G-AA--------G--GA-GATGGCCTTCTTCAGTCAGTA 1001
||||||||||||| |||| | || | || ||||||||||| |||||||||
Sbjct 975 GGTAACGAATCTGATGATAAAGGAATCAACTATGAAGAAGATGGCCTTCTCCAGTCAGTA 1034
Query 1002 AAGGGTTCATCTCGCAGTTTGAATTTTGAAACTCTTGAGGAAGATACAATTGTGAAAGAT 1061
|| ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1035 AAAGGTCCATCTCGCAGTTTGAATTTTGACACTCTTGAGGAAGAAACAATTGTGAAAGAT 1094
Query 1062 GACATCAGTAACGAATCTGGTGATGAAAAAATCAACTATGAAGCAGATAATG------AT 1115
||||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 1095 GACATTAGTAACGAATCTGGTGATGAAAAAAGCAACTATGAAGGTGATAATGCTTCTGAT 1154
Query 1116 GAT-A--GCCTTCTTCAGTCAA-GA--------CCAAAGACTGAACCCGAGAAGCACAAA 1163
||| | |||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 1155 GATGATAGCCTCCTTCAGTCAATGATAGAGAGACCAAAGACTGAACCCGAGAAGCACAAT 1214
Query 1164 TTGCCACAGCTTGTTGATTTGATTCATAGAGTTTTTCACTCAACAAATCGGACAGTCATC 1223
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1215 TTGCCACAGCTTGTTAATTTGATTCATAGAGTGTTTCACTCAACAAATCGGACAGTCATC 1274
Query 1224 ACGAAGGAGGAGCTTCTTCACAAGATTATTGCAAACCAAATCAATATAACCGATAGAAGG 1283
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1275 ACGAAGGAGGAGCTTCTTTACAAGATTATTGCAAACCAAATCAATATAACTGATAGAAGG 1334
Query 1284 GAAGTGGAGGAACAGTTAAGTCTGATGTTGCAATTAGTCCCGGATTGGATCTCTGAAACA 1343
|||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1335 GAAGTGGAAGAACAATTAAGTCTGATGTTGCAATTGGTCCCGGATTGGATATCTGAAACA 1394
Query 1344 AAAGCATCTTCTGGGGATCTTCTTGTTAGCATCAATAAAATGTCGGCTGCCGAAACAGTA 1403
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1395 AAAGCATCTTCTGGGGATCTTCTTGTTCGCATCAATAAAATGTCGACTGCCGAAACAGTA 1454
Query 1404 CGTGCAAAACTTGAAGAAGCAACTTCACAGGACATTTCACTTGTCTACTGAAAAACCATA 1463
||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1455 CGTGCAAGACTTGAAGAAGCAACTTCACATGACATTTCACTTATCTACTGAAAAACCATA 1514
Query 1464 AAATTCAGGAA-TTTATTGTGTGTTT-CATCCTCTTCACAAATTCAATTATCATTATTCT 1521
||| | | || ||| || ||||||| |||||||||||| |||||| |||||||||||||
Sbjct 1515 AAACTGA--AACTTTTTTTTGTGTTTTCATCCTCTTCACCAATTCAGTTATCATTATTCT 1572
Query 1522 TCACAAATAGCTTCTTTCTAAGCTGGTCCAACTTATAAACTTGTAATATTC-TTTTA 1577
||||||||| |||||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct 1573 TCACAAATATCTTCTTTCTAAGCTGGTCCAACCTATAAACTTGTAACATTCGTTTTA 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5