BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485876 Length=1605 Score E Sequences producing significant alignments: (Bits) Value AT3G54710.1 | Symbols: ATCDT1B, CDT1B, CDT1 | homolog of yeast ... 2213 0.0 > AT3G54710.1 | Symbols: ATCDT1B, CDT1B, CDT1 | homolog of yeast CDT1 B homolog of yeast CDT1 B | chr3:20251841-20254199 FORWARD LENGTH=1673 Length=1673 Score = 2213 bits (1198), Expect = 0.0 Identities = 1485/1617 (92%), Gaps = 45/1617 (3%) Strand=Plus/Plus Query 1 TCACTTCCCTAATCTCTC-TTTCTA-CAATGAGCTCGTCGTCTAAAATCGAATCAGAGAA 58 |||||||||||||||||| |||| | |||||||||||||||||||||| || |||||||| Sbjct 18 TCACTTCCCTAATCTCTCTTTTC-AGCAATGAGCTCGTCGTCTAAAATTGATTCAGAGAA 76 Query 59 GCCAGTTATGGTGTCGGAGTCACTGTTTTCTACTAAGACTCCTAACAAAACCGTTAAAAG 118 |||||||||||| || |||||||| |||||||| |||||||||| ||||||||||||||| Sbjct 77 GCCAGTTATGGTTTCCGAGTCACTATTTTCTACCAAGACTCCTATCAAAACCGTTAAAAG 136 Query 119 GCAGATCTTTTCTTCGTCCCCAAAACCTGAATTTGTTGTAAAATTACCTGAAAGGTTCGA 178 |||||||||||||||||||||||||||||||| |||| ||||||| || ||||||||||| Sbjct 137 GCAGATCTTTTCTTCGTCCCCAAAACCTGAATCTGTTATAAAATTGCCCGAAAGGTTCGA 196 Query 179 GATTTTGGAGGTATTTTTCAATGGGTTGGATACTGCAATTAGGTTACTTAAATTAAAGGG 238 ||||||||||| |||||||||||| |||||||||||||||||| | |||||||||||||| Sbjct 197 GATTTTGGAGGAATTTTTCAATGGTTTGGATACTGCAATTAGGCTGCTTAAATTAAAGGG 256 Query 239 TTCGCCAACGACATACGCTAATATATGTCCCAAGATCGAGTATCTTACTAATCGGATCTT 298 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257 TTCGTCAACGACATACGCTAATATATGTCCCAAGATCGAGTATCTTACTAATCGGATCTT 316 Query 299 CTCGTATGATCATTTGGCTCAGATGAAGCATATTTATCCGGAAGCCATTGAACTAAAGAG 358 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 317 CTCGTATGATCATTTGGCTCAGATGAAGCATATTTATCCGGAAGCTATTGAACTAAAGAG 376 Query 359 AGTTTTGAAGTATGTTGAAGACACTTGTTGTATGAAACCCAGTCTTCATATTAGCTTAAA 418 ||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||| Sbjct 377 AGTTTTGAAGTTTGTTGAAGACACTTGTTGTATGAAACCTAGGCTTCATATTAAATTAAA 436 Query 419 CACCGATGCAATTGTACTTGACGATACAATTTGTGGAACTAAATACATGGAACTTAGGAA 478 ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| || Sbjct 437 TACCGATGCAATTGTAGTTGAGGATACCATTTGTGGAACTAAATACATGGAACTTAGAAA 496 Query 479 GGT-TTTCCACTCAAAGCTTGTAGATTTTTACAAAGCTCATCCTAAGGACGAAGTTCCGA 537 ||| |||| |||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 497 GGTGTTTC-ACTCAAAGCTTGTAGATTTTCGCAAAGCTCATCCTAAGGACGAAATTCCGA 555 Query 538 AAGAACTGCTTCCTGAACCGTTCAATTCCCCAAAAAGGGATAGTTATTCAGGTATAGTAA 597 ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 556 AAGAACTGCTTCCTGAACCATTCAATTCTCCTCAAAGGGATAGTTATTCAGGTATAGTAA 615 Query 598 GTGTAGGCTTAGGAGAACCTAAACTTGAAGTTGGAAGGTTTGATGTTCATATGGAGGAGA 657 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 616 GCGTAGGCTTAGGAGAACCTAAACTTGAAGTTGGAGGGTTTGATGTTCATATGGAGGAGA 675 Query 658 TAGAGCAAGAAGAACAAGATGCTAACAAAG-CAATGCCAGATTCTACTTTGTCACACATA 716 ||||||||||||||||||||| |||||||| || | || ||||||||||||||||||||| Sbjct 676 TAGAGCAAGAAGAACAAGATGTTAACAAAGTCATT-CCTGATTCTACTTTGTCACACATA 734 Query 717 GAATCCAGAATAGTTGAAATCCCAGTCAATGATTCATCTACTCCCTCCAAAGACTTATCC 776 ||||| ||||||||||||| ||||||||| |||| ||| ||||||||||||||||| ||| Sbjct 735 GAATCAAGAATAGTTGAAACCCCAGTCAAAGATTTATCCACTCCCTCCAAAGACTTGTCC 794 Query 777 ACACCAATCCGTCTCATGAGTGCTACACCGACGTTGCAGCTATCTAAAAGATGTATTGAG 836 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 795 ACGCCAATCCGGCTCATGAGTGCTACACCGACGTTGCAGCTATCTAAAAGATGTATTGAG 854 Query 837 TTGACTCCAGAGGGTGGTGATGATAACTCTGTTAGATCAACAAATAGTCTGGCAAGGGGT 896 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 855 TTGACTCCAGAGGGTGGTGATGATAACTCTCTTAGATCAACAAATAGTCTAGCAAGGGGT 914 Query 897 CCATCTCGCTGTCTGAATTTTGATACTCTTGAGGAAGATGCAATTGTGAAAGATGACATT 956 ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||| Sbjct 915 CCATCTCGCAGTCTGAATTTTGATACTTTTGAGGAAGATGCAATTGAGAAAGATGATATT 974 Query 957 GGTAACGAATCTGCTGAT---G-AA--------G--GA-GATGGCCTTCTTCAGTCAGTA 1001 ||||||||||||| |||| | || | || ||||||||||| ||||||||| Sbjct 975 GGTAACGAATCTGATGATAAAGGAATCAACTATGAAGAAGATGGCCTTCTCCAGTCAGTA 1034 Query 1002 AAGGGTTCATCTCGCAGTTTGAATTTTGAAACTCTTGAGGAAGATACAATTGTGAAAGAT 1061 || ||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1035 AAAGGTCCATCTCGCAGTTTGAATTTTGACACTCTTGAGGAAGAAACAATTGTGAAAGAT 1094 Query 1062 GACATCAGTAACGAATCTGGTGATGAAAAAATCAACTATGAAGCAGATAATG------AT 1115 ||||| ||||||||||||||||||||||||| ||||||||||| ||||||| || Sbjct 1095 GACATTAGTAACGAATCTGGTGATGAAAAAAGCAACTATGAAGGTGATAATGCTTCTGAT 1154 Query 1116 GAT-A--GCCTTCTTCAGTCAA-GA--------CCAAAGACTGAACCCGAGAAGCACAAA 1163 ||| | |||| |||||||||| || |||||||||||||||||||||||||| Sbjct 1155 GATGATAGCCTCCTTCAGTCAATGATAGAGAGACCAAAGACTGAACCCGAGAAGCACAAT 1214 Query 1164 TTGCCACAGCTTGTTGATTTGATTCATAGAGTTTTTCACTCAACAAATCGGACAGTCATC 1223 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1215 TTGCCACAGCTTGTTAATTTGATTCATAGAGTGTTTCACTCAACAAATCGGACAGTCATC 1274 Query 1224 ACGAAGGAGGAGCTTCTTCACAAGATTATTGCAAACCAAATCAATATAACCGATAGAAGG 1283 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1275 ACGAAGGAGGAGCTTCTTTACAAGATTATTGCAAACCAAATCAATATAACTGATAGAAGG 1334 Query 1284 GAAGTGGAGGAACAGTTAAGTCTGATGTTGCAATTAGTCCCGGATTGGATCTCTGAAACA 1343 |||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1335 GAAGTGGAAGAACAATTAAGTCTGATGTTGCAATTGGTCCCGGATTGGATATCTGAAACA 1394 Query 1344 AAAGCATCTTCTGGGGATCTTCTTGTTAGCATCAATAAAATGTCGGCTGCCGAAACAGTA 1403 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1395 AAAGCATCTTCTGGGGATCTTCTTGTTCGCATCAATAAAATGTCGACTGCCGAAACAGTA 1454 Query 1404 CGTGCAAAACTTGAAGAAGCAACTTCACAGGACATTTCACTTGTCTACTGAAAAACCATA 1463 ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 1455 CGTGCAAGACTTGAAGAAGCAACTTCACATGACATTTCACTTATCTACTGAAAAACCATA 1514 Query 1464 AAATTCAGGAA-TTTATTGTGTGTTT-CATCCTCTTCACAAATTCAATTATCATTATTCT 1521 ||| | | || ||| || ||||||| |||||||||||| |||||| ||||||||||||| Sbjct 1515 AAACTGA--AACTTTTTTTTGTGTTTTCATCCTCTTCACCAATTCAGTTATCATTATTCT 1572 Query 1522 TCACAAATAGCTTCTTTCTAAGCTGGTCCAACTTATAAACTTGTAATATTC-TTTTA 1577 ||||||||| |||||||||||||||||||||| ||||||||||||| |||| ||||| Sbjct 1573 TCACAAATATCTTCTTTCTAAGCTGGTCCAACCTATAAACTTGTAACATTCGTTTTA 1629 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79266660555 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5