BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485881
Length=2144
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54750.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2867 0.0
> AT3G54750.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages. | chr3:20264634-20268798
REVERSE LENGTH=2175
Length=2175
Score = 2867 bits (1552), Expect = 0.0
Identities = 1728/1814 (95%), Gaps = 8/1814 (0%)
Strand=Plus/Plus
Query 334 GCTAAGAGGAAGACGCCTTCTGAACTGAGAGGAGAACAATTGAAACGGACTGCTTTTGTG 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GCTAAGAGGAAGACGCCTTCTGAACTGAGAGGAGAACAATTGAAACGGACTGCTTTTGTG 278
Query 394 GACCAAGCTAAAGAAGCTTTTGATGCATTGCGTCCTTGCAAAAGTAGTGCTGAGAAAGAT 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 279 GACCAAGCTAAAGAAGCTTTTGATGCATTGCGTCCTTGCAAAAGTAGTGCTGAGAGAGAA 338
Query 454 AATGGGCTCAAGAAA-CAAGAGCTTTCGAAGAATCCAAAATACATAGAGATGCGTATGGA 512
|||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 339 AATGGGTTCAAGAAATCA-GAGCTTTCGAAGAATCCAAAATACATTGAGATGCGTATGGA 397
Query 513 TGAACTGTATCCTGTCAAAAAGGCTAGGCCTTGGATGCTCTCTGCCAAAGAAAACTCTAA 572
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 398 TGAACTGTATCCTGTCAAAAAGGCTAGGCCTTGGATGCTCTCTGGCAAAGAAAACTCTAA 457
Query 573 GGAAAATGGTGCGAAGCAATCCAGCAGCCTAATCAATGTTTCTTTACTCTCAAATGTTGC 632
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 458 GGAAAATGGTGCGAAGCAATCCAGCAGCCTAATCAATGTTTCTTTACTCTCGAATCTTGC 517
Query 633 TGCCAACAAAAGACAACTTATTCGTGAGGAGAATAATGCTTCTACTGAAGTTTCTGATGA 692
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 518 TGCCACCAAAAGACAACTTATTCGTGAGGAGAATAATGCTTCTACTGAAGTTCCTGATGA 577
Query 693 CATTAAGGCTGAAGCTCGTCAAACAAATGAGAGATGTAGCCAGAGCATATTTCGCAGTGT 752
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CACTAAGGCTGAAGCTCGTCAAACAAATGAGAGATGTAGCCAGAGCATATTTCGCAGTGT 637
Query 753 CACAGAACTTTCAACCAGGGGTGAAGAATTATCCTGCTTGCCAGATATTGATATGAACAA 812
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 CACACAACTTTCAACCAGGGGTGAAGAATTATCCTGCTTGCCAGATATTGATATGAACAA 697
Query 813 AGCATTGAAAGGACTTGCCACTTGTGAACCATTGCTGGTTCATCCTGCCGACATAAGTGT 872
|||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||
Sbjct 698 AGCATTGAAAGGACTTGCTACTTGTGAACCTTTGCTGGTTCATCCTGGCGACATAACTGG 757
Query 873 GAAAGATGATACTTCTGCTTCATTAAGTGGAAATTTCATGTCTGAGTTCCAA-TTTCCTG 931
| ||||||||||| |||||||||||||||| ||||||||| ||||| ||| |||| ||
Sbjct 758 GGAAGATGATACT---GCTTCATTAAGTGGAAGTTTCATGTCCGAGTTTCAAGTTTC-TG 813
Query 932 GGCAAAAGATTCCTCTGGACCTTTCCTTGAAGACTTATGCTCGACTTGTTTCCTCTTCTC 991
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GGCAGAAGATTCCTCTGGACCTTTCCTTGAAGACTTATGCTCGACTTGTTTCCTCTTCTC 873
Query 992 CATTAAGTTGGTTACATAGGTCAATCATGGGTAGTACCTACAATGGTATGCCACAGCTGA 1051
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 874 CATTAAGTTGGTTACATAGATCAATCATGGGTAGCACATACAATGGTATGCCACAGCTGA 933
Query 1052 AGTCTCTGTCGTGTAATGTGGTAAATCAAGATAACAGTAGTGGTTCTGGATCAGCTGTGG 1111
|||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 934 AGTCGCTGTCGTGTAATGTGGTAAATCAAGATAACAGTAGTGGTTCTGGAGCATCTGTGG 993
Query 1112 TTTCCCAAGTGTTAAATTCTATGTCGCTACACTCGTGGGTTTATCCTCAGTCTACCTTGC 1171
||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 994 TTTCCCAGGTGTTAAATTCCATGTCACTACACTCGTGGGTTTATCCTCAGTCCACCTTGC 1053
Query 1172 CACCTTTTGTCATATCGGCATTGGTAGCATCTGGATCAGACAGAGGTGAAGTTGATTTTC 1231
|||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
Sbjct 1054 CACCTTTTGTCATATCGGCAATGGTGGCATCTGTATCAGACAGAGGTGAAGTTGATTTCC 1113
Query 1232 TACAAAATCGAAAATTGGCATGGGAGGATGCTTTTCGAAGTCTATATTTCATATTTCGGA 1291
||||||| ||||||||||||||||||||||| ||||||||| ||||||| || ||||| |
Sbjct 1114 TACAAAAGCGAAAATTGGCATGGGAGGATGCATTTCGAAGTTTATATTTTATGTTTCGAA 1173
Query 1292 AGAATCTCTGCAAAATATTTTATGTCTGTACTTCTCAGTTTGTGGCAATGTTCACTGGAA 1351
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 AGAATCTCTGCAAAGTATTTTATGTCTGTACTTCTCAGTTTGTGGCAATGTTCACTGGAA 1233
Query 1352 GCTGTGAGTCAGGAGGTGTCAAACGCTCATGCAATGGCTATATCACCCAGTCAACTAGAA 1411
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 GCTGTGAGTCAGGGGGTGCCAAACGCTCATGCAATGGCTATATCACCCAGTCAACTAGAA 1293
Query 1412 GATTGAGAGCCATGCTTAACGATCTTGACATCAGCTACTCTATGCCTCTTTGCAAAACTA 1471
||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct 1294 GATTGAGAGCCATGCTTAAAAATCTTGACATCTGCTACTCTATGCCTCTTTGCAAGACTA 1353
Query 1472 AAATGGATCAGACCACTGTTGAAGATCTTGCTGAACTCTCAGAGATAGAGAATCATAACC 1531
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1354 AAATGGATCAGACCACTGTTGAAGATCTTGCTGAGCTCTCAGAGTTAGAGAATCATAACA 1413
Query 1532 TTGGCCAGATTCGTCGTTCGCGTTCCGTCTCAAACATTGATAATACTCCAGAATCTTTCT 1591
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1414 TTGGCCAGATTCGTCGTTCGCGTTCTGTCTCAAACATTGATAATACTCCAGAATCTTTCT 1473
Query 1592 TGGCTTTTGTCGGAAATGAGAGCGTACATGGATTGTATGATCTTCTCTTAAATTATAGGT 1651
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1474 TGGCCTTTGTCGGAAATGAGAGCGTACATGGATTGTATGATCTTCTGTTAAATTATAGGT 1533
Query 1652 CTTCTTTTGAATTTCTTCCTACCGCCGACGTTCCTGTTTTATATTCACCAGTGCCATTTC 1711
|||||||||||||||||||||||| || |||||||| |||| |||||||||||||||||
Sbjct 1534 ATTCTTTTGAATTTCTTCCTACCGCAGATGTTCCTGTATTATCTTCACCAGTGCCATTTC 1593
Query 1712 AGAATGCTGCACTGTCTTCTCCTGAGATCAAATGCACTGAGATGGTAAGACCAGAACATA 1771
|||||||||||||||||||||| |||||||||||| |||||||||||| | |||||||||
Sbjct 1594 AGAATGCTGCACTGTCTTCTCCCGAGATCAAATGCTCTGAGATGGTAAAAACAGAACATA 1653
Query 1772 CAAGTTGCTGCATGGTTGAGATTAAAGGTGAATATCTTCCGCCGTGGATTATTAGCAATA 1831
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1654 CAAGTTGCTACATGGTTGAGATTAAAGGTGAATATATTCCGCCGTGGATTATTAGCAATA 1713
Query 1832 TATGTGCAAATGTGGGTGCTAATGGACAAAACTTTGAAGCCAGCTTTGTGACTGAGCCAA 1891
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1714 TATGTGCAAATGTGGGTGCTAATGGACAAAACTTTGAAGCCAGCTTTGTGACCGAGCCAA 1773
Query 1892 CCTCGGTTAATTTAAACATTGGTCTACCACAAGTCCCTGAGAAGACAGACCCTGAGTCTC 1951
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 CCTCGGTTAATTTAAACATTGGTCTACCACAAGTCCCTGAGAAGACAGACCCTGAGTCTA 1833
Query 1952 GAGTCATAGAAGGCACAGGAGAAACAAACGATAATGCGTCTGACATTCCCGGAGCAGTGA 2011
||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||
Sbjct 1834 GAGTCATAGAAGGCACAGGAGAAACAAACGACAATGCGTCGGACATTCCTGGATCAGTGA 1893
Query 2012 TCTGCCCTCAGCTTCAATCAGGCCATCTTAAGAGCTTGAAGTATTGCAACAAGTCTTACA 2071
|||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 1894 TCTGTCCTCAGCTTCAATCAGGCCATCTAAAGAACTTAAAGTATTGCAACAAGTCTTACA 1953
Query 2072 CGGTTTCGCTGTCTCCCTCGTGATCTGTCTCTGTT-TTTCTTTCCAGGTTTTCATCATTA 2130
|||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 1954 CGGTTTCGCTGTCTCCTTCGTGATCTGTCTCTGTTATTTTTTTCCAAGTTTTCATCATTA 2013
Query 2131 TGTATGAAATGAAT 2144
||||||||||||||
Sbjct 2014 TGTATGAAATGAAT 2027
Score = 222 bits (120), Expect = 1e-56
Identities = 192/223 (86%), Gaps = 19/223 (9%)
Strand=Plus/Plus
Query 80 GTTCGTTTCCCCTAAAATTTAC-AAA-AGAGAGAATAATGaaaaaaaaCCTAGCCTGCTC 137
||| |||||||||||| ||||| ||| ||||||||||||| |||||| |||||||||| |
Sbjct 1 GTTTGTTTCCCCTAAATTTTACAAAATAGAGAGAATAATG-AAAAAACCCTAGCCTGCCC 59
Query 138 CGCCGTGGAGGCG-ATTCACACCACGACGAGCTCGTAATCGTCGCTGGGTTTCTATGTTT 196
||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 CGCCGTGGAGGAGAATT-ACACCACGACGAGCTCGTAATCGCCGCTGGGTTTCTATGTTT 118
Query 197 ACATCGCTAAGAGATTAACCATCGAGCGT-A---G-TAAA----T--GG-AA-TTTGGG- 242
||||||||||||||||||||||||||||| | | || | || || ||||||
Sbjct 119 ACATCGCTAAGAGATTAACCATCGAGCGTGATTTGGTATTGGGGTTAGGTAAATTTGGGG 178
Query 243 ATCAAGTGAACAGTATCATTTGAAAATGGTGAAAGTAGTTGCT 285
|||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 179 ATCAAGCGAACAGTATCATTTGGAAATGACGAAAGTAGTTGCT 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106324754310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5