BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485883
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1445 0.0
> AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273716-20275898 REVERSE LENGTH=1004
Length=1004
Score = 1445 bits (782), Expect = 0.0
Identities = 940/1011 (93%), Gaps = 31/1011 (3%)
Strand=Plus/Plus
Query 1 ATAATTCAATTCActcttcttctctctctatctatatctctgctctctctttctctcGCA 60
|||||||||||| |||| ||||||||||||||| | | || ||| ||| |||| | ||
Sbjct 1 ATAATTCAATTCGCTCTCCTTCTCTCTCTATCTCT-GCCCT-TTCTTTCTCTCTCACACA 58
Query 61 TACACACGATCCAATGACAACGAGCAACAACGTGAACGGATGTTTCGGAGACACGAAGCT 120
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CAAACACGATCCAATGACGACGAGCAACAACGTGAACGGATGTTTCGGAGACACGAAGCT 118
Query 121 GACCAAAGTGTTCGTAGGAGGATTGGCTTGGGATACTCACAAAGAAGCAATGTATGATCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GACCAAAGTGTTCGTAGGAGGATTGGCTTGGGATACTCACAAAGAAGCAATGTATGATCA 178
Query 181 TTTCATCAAGTATGGTGACATCTTGGAGGCAGTCATCATCTCCGACAAACTCACTCGCCG 240
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 TTTCATCAAGTATGGGGACATCTTGGAGGCAGTCATTATCTCCGACAAACTCACTCGCCG 238
Query 241 TTCCAAAGGATACGGCTTTGTGACTTTCAAAGATGCGGAAGCTGCCACGAGAGCTTGCGA 300
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 TTCCAAAGGATATGGCTTTGTGACTTTCAAAGATGCGAAAGCTGCCACGAGAGCTTGCGA 298
Query 301 AGACTCTACTCCGATCATCAATGGCCGCCGTGCCAACTGCAATCTCGCCTCCCTCGGTGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGACTCTACTCCGATCATCAATGGCCGCCGTGCCAACTGCAATCTCGCCTCCCTCGGTGG 358
Query 361 CCGCCTTCGTAAATCCCCCACCATGACCTCTCCTCAACAAGGAACAAAAAATGGTAACAG 420
||| |||||||||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 359 CCGTCTTCGTAAATCCCCTACCATGACCTCTCCTCAACAAGGACCAAAAAATGGGAACAG 418
Query 421 GGCCACGTCACCACATGTTGGAAATCATTCTCAATGGTACTACCCGTCCGGTTTCACAAA 480
||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 419 GGCCACGCCACCACATGTTGGAAATCATTCTCAGTGGTACTACCCGTCCGGATTCACAAA 478
Query 481 CCAGCAATACCAACTTCAACAACAA-CATCAAGCCGTTCCTTTCTATGGGTACCCTTCCG 539
||||||| | |||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 479 CCAGCAACATCAAC---AACAA-AATCATCAAGCCGTTCCTTTCTATGGGTACCCTTCCG 534
Query 540 CCTACGTTGCCCCGAACATGAACTTCAATCAAAAAGTTGGATATGCCGGAGGAACCTATA 599
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 535 CCTACGTTGCCCCGAACATGACCTTCAATCAAAAAGTTGGATATGTCGGAGGAACCTATA 594
Query 600 TGAACGGATACTATGCACAAATGCAACCACAACCGCAATCGCAGCCGCAACCGCAATATT 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 595 TGAACGGATACTATGCACAAATGCAACCACAACCGCAATCGCAGCCACAACCGCAATATT 654
Query 660 ACCACCATCACATGTATGGTGGAGGACGAGTTATGGTTGGGGCAGCAAGTCCAATGGTGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ACCACCATCACATGTATGGTGGAGGACGAGTTATGGTTGGGGCAGCAAGTCCAATGGTGC 714
Query 720 CTTTCTACACTGTCTATCCTTATCATCAATCTCAAGCC-TACGGGTTTCCACCACCTTCC 778
|||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 715 CTTTCTACACTGTCTATCCTTATCATCAATCTCAAGCCAT-CGGGTTTCCACAACCTTCA 773
Query 779 TTTTCGAAACCCCTTTCTTTTTCCACTCCTCCCATATCAGGCACAGTTGGAGGAGAGAGC 838
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 774 TTTTCGAAACCTCTTTCTTTTTCCACTCCTCCTATATCAGGCACAGTTGGAGGAGAGAGC 833
Query 839 ATACAGAAGAAGGCCATACATTGATAGGCTACAAGCTGTTGATCAAA--ATT--C--A-- 890
||||||||||||||||||||||||||||||| |||||||| |||||| ||| | |
Sbjct 834 ATACAGAAGAAGGCCATACATTGATAGGCTAGAAGCTGTTAATCAAACGATTGACTCAGC 893
Query 891 ------TT-TTC-T-----CCATCTCACTAAGCTTTATTTTTACC-AGAGACATGTATTT 936
|| ||| | ||||||||||||||||||||||| | |||||| |||||||
Sbjct 894 CCAAAATTATTCATTTTATCCATCTCACTAAGCTTTATTTTTTTCTAGAGACTTGTATTT 953
Query 937 TTAATAATTTAATTTCGTTACATTTAATCATTTATTCATTGAAGCTAAGCT 987
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 954 GTAATAATTTAATTTCGTTACATTTAATAATTTATTCATTGAAGCTAAGCT 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5