BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485890
Length=2641
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54800.1 | Symbols: | Pleckstrin homology (PH) and lipid-bi... 3956 0.0
> AT3G54800.1 | Symbols: | Pleckstrin homology (PH) and lipid-binding
START domains-containing protein | chr3:20286085-20290077
FORWARD LENGTH=2692
Length=2692
Score = 3956 bits (2142), Expect = 0.0
Identities = 2523/2697 (94%), Gaps = 65/2697 (2%)
Strand=Plus/Plus
Query 1 ACAAAATAACTATTTGTTTTTCTCTCTTGATTGAGAGaaaaac---------a----aaa 47
||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 2 ACAAAATAATTATTTGTTTTTCTCTCTTGATTGAGAGAAAAACAAAAAAAAAATTTGAAA 61
Query 48 aa-aaTTTTTTCTTTGCAGCTGATCTTT-CATATTTTTGATTCTCTGTTTCGCTTCGGCG 105
|| ||||||||||||| | ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 62 AATAATTTTTTCTTTGTAACTGATCTTTCCATACTTTTGATTCTCTGTTTCGCTTCGGCG 121
Query 106 GAATCAGAGAATCGCTTCAAGTTACAAATTCG-AGACAAACACGTTTTGTGATATCGAAT 164
|||||||||||||| ||||||||||||||||| | ||||| |||| |||||||||||| |
Sbjct 122 GAATCAGAGAATCGTTTCAAGTTACAAATTCGCA-ACAAAAACGTGTTGTGATATCGAGT 180
Query 165 -TTATATTCGTTTACGGGGAAGAAACATTTCAAGTGGTAGAA--ATTT--TGA---ATCG 216
|| ||||||||||||||||||||||||||||||||||| || |||| ||| | |
Sbjct 181 ATT-TATTCGTTTACGGGGAAGAAACATTTCAAGTGGTATAAGCATTTCCTGATTGTTTG 239
Query 217 ----TTTG-AT-G------AAATTTAAAACTaa-aaaaaTGGATTTTGTAGAGAAATGGG 263
|||| || | |||||||||| ||| ||||| ||| ||||||||||||||||
Sbjct 240 AAACTTTGAATCGTTTAATAAATTTAAAAATAAGAAAAAAGGA-TTTGTAGAGAAATGGG 298
Query 264 CGTGTCTCAAACCGACGGAAGAATGGAAGGTTGGCTTTATACCATCAGACATAACCGATT 323
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 299 AGTGTCTCAAACCGACGGAAGAATGGAAGGTTGGCTTTATACCATCCGACACAACCGATT 358
Query 324 TGGCCTTCAATTTTCCCGTAAACGATATTTCGTTCTTCTA-GAAAACAACCTTACAAGTT 382
||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||
Sbjct 359 TGGCCTTCAATTTTCCCGTAAACGATACTTCGTTCTTC-ACGAGAACAACCTTACAAGTT 417
Query 383 TTAAATCTGTACCATCCGATCACAATGAGGAACCTGAGAGAAGAGCATCTTTAGATTGTT 442
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 TTAAATCTGTACCATCTGATCACAATGAGGAACCTGAGAGAAGAGCATCTCTAGATTGTT 477
Query 443 GTATTCGGGTTACCGACAATGGAAGAGAGAGTTTCCATAGGAAGATTCTTTTCATATTCA 502
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 478 GTATTCGCGTTACCGACAATGGTAGAGAGAGTTTCCATAGAAAGATTCTTTTCATATTCA 537
Query 503 CTCTTTACAACACTTCGAACCATTTGGATCAACTAAAGTTGGGAGCAAGTAGTCCTGAAG 562
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CGCTTTACAACACTTCGAACCATTTGGATCAACTAAAGTTGGGAGCAAGTAGTCCTGAAG 597
Query 563 AAGCAGCCAAATGGATCCGATCATTGCAGGATGCTTCACAAAAGGGGTTT-CAATTTCCG 621
|||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 598 AAGCTGCCAAATGGATCCGATCATTGCAGGATGCTTCACAAAAGGGGTTTCCGA-TTCCG 656
Query 622 GATTGCGAA---TTTGTATCTCATGCTGAGAAGGGACTTGTGAAGCTTGATGTATCAAAG 678
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GATTGCGAATTTTTTGTATCTCATGCTGAGAAGGGACTTGTGAAGCTTGATGTATCAAAG 716
Query 679 AGGAACCGTCGCAAAAACTCTGTGGACTGGACAAATTACTCATCCACAAATTACTCATCA 738
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 717 AGGAACCGTCGCAAAAACTCTGTGGACTGGACAAATTATTCATCGACAAATTACTCATCA 776
Query 739 ACATCATTGAATGTCGAAACAGTA-GTTGCGCATGATGTCATTGCACCTTCTCCATGGAA 797
||||||||||||||||||||| | || |||| |||||||||||||||||||||||||||
Sbjct 777 ACATCATTGAATGTCGAAACA-AACGTAGCGCCTGATGTCATTGCACCTTCTCCATGGAA 835
Query 798 AATCTTTGGATGCCAAAACGGTTTACGCCTTTTCAAAGAAGCTAAAGATTGGGATTCCCG 857
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AATCTTCGGATGCCAAAATGGTTTACGCCTTTTCAAAGAAGCTAAAGATTGGGATTCCCG 895
Query 858 CGGAAGGCATTGGGATGATCACCCTGCAATAATGGCAGTTGGGGTCATTGATGGTACTTC 917
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 896 CGGAAGGCATTGGGATGATCACCCAGCAATCATGGCAGTTGGGGTCATTGATGGTACTTC 955
Query 918 AGAAGATATTTTTAATACGTTAATGTCTCTCGGTCCCCTAAGATCAGAATGGGACTTCTG 977
||| |||||||| || ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 956 AGAGGATATTTTCAACACGTTAATGTCTCTCGGTCCCTTACGATCAGAATGGGACTTCTG 1015
Query 978 TTTCTACAAAGGTAGTGTGGTGGAGCATCTTGATGGACACACAGATATAATCAATCTTCA 1037
|||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1016 TTTCTACAAAGGAAACGTGGTGGAGCATCTTGATGGACACACAGATATAATCCATCTTCA 1075
Query 1038 GTTATACAGTGATTGGTTGCCATGGGGCATGAATCGAAGAGACTTATTGCTGCGACGTTA 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1076 GTTATACAGTGATTGGTTGCCATGGGGCATGAATCGAAGAGACTTATTGCTGCGACGCTA 1135
Query 1098 CTGGAGAAGGGAAGAAGATGGAACATATGTGATACTTTGTCACTCTGTTTATCACAAGAA 1157
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1136 CTGGAGAAGGGAAGATGATGGAACATATGTCATACTTTGTCACTCTGTATATCACAAGAA 1195
Query 1158 CTGCCCACCAAAGAAGGGATACGTTCGCGCTTGTGTCAAAAGTGGTGGTTATGTGGTGAC 1217
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1196 CTGCCCACCAAAGAAGGGATACGTCCGCGCTTGTGTCAAAAGTGGTGGTTACGTGGTGAC 1255
Query 1218 TCCGGCGAACAACGGGAAACAATCACTAGTAAAGCATATGGTAGCCATTGATTGGAGAAG 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TCCGGCGAACAACGGGAAACAATCACTAGTAAAGCATATGGTAGCCATTGATTGGAGAAG 1315
Query 1278 CTGGAACTTATACATGAGGCCATCTTCTGCAAGATCCATAACTATCCGTGTGGTTGAGAG 1337
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1316 CTGGAACTTATACATGAGACCATCTTCTGCAAGATCCATAACCATCCGTGTGGTTGAGAG 1375
Query 1338 GGTTGCAGCATTACGCGAAATGTTCAAAGCGAAACAAGGAAATGGCTTCACTGACTTCGT 1397
|||||| || |||||||||||||||||||||||||||||| | ||||||||||| || ||
Sbjct 1376 GGTTGCGGCTTTACGCGAAATGTTCAAAGCGAAACAAGGACACGGCTTCACTGAGTTTGT 1435
Query 1398 TTCAGGGGAGTTTTTGGACACCAAACCCTGCTTATCCAAAATCAACACTAGGCCCCTTAA 1457
||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 1436 TTCAGGGGAGTTTTTGGACACCAAACCCTGCTTGTCCAAGATCAACACTATGCCCCTTAA 1495
Query 1458 AACAGAGGCCAAAGAGGTTGATCTAGAGACTGTGAAGGCTGAGGAAATGGATAAACCTAC 1517
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 1496 AACAGAGGCCAAAGAGGTTGATCTAGAGACTATGCATGCTGAGGAAATGGATAAACCTAC 1555
Query 1518 TTCAGCACGCAATAGTTTGATGGACTTAAATGATGCTTCTGATGAGTTTTTTGACGTTCC 1577
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1556 TTCAGCACGCAATAGTTTGATGGACTTAAATGATGCTTCTGATGAATTTTTTGACGTTCC 1615
Query 1578 TGAGCCCAACGAGTCTACCGAGTTTGATAGCTTTATTGATACCTCTCCATATTCTCAAGG 1637
|||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1616 TGAGCCCAACGAATCCACTGAGTTTGATAGCTTTATTGATAGCTCTCCATATTCTCAAGG 1675
Query 1638 ACATCAGCTCAAGATACCAACACCAGCTGGTATTGTTAAGAAACTTCAAGATCTAGCCAT 1697
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1676 ACATCAGCTCAAGATTCCAACACCAGCTGGTATTGTCAAGAAACTTCAAGATCTAGCCAT 1735
Query 1698 TAATAAGAAAGGCTATATGGATTTACAAGAAGTGGGTTTGGAGGAAAATAACACCTTCTT 1757
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1736 TAATAAGAAAGGCTATATGGATTTACAAGAGGTGGGTTTGGAGGAAAATAACACTTTCTT 1795
Query 1758 CTATGGAGCTACTCTTCAAAAAGATCCAAGTCTCACTCTGCCTTGTAGTTGGTCTACCGC 1817
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CTATGGAGCCACTCTTCAAAAAGATCCAAGTCTCACTCTGCCTTGTAGTTGGTCTACCGC 1855
Query 1818 AGATCCATCGACATTCTTGATTCGTGGAAACAATTATCTAAAAGATCAACAAAAGGTAAA 1877
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1856 GGATCCATCGACATTCTTGATTCGCGGAAACAATTATCTAAAAAATCAACAAAAGGTAAA 1915
Query 1878 AGCAAAAGGCACATTGATGCAAATGGTTGGAGCGGACTGGATAAGTTCGGATAAGAGAGA 1937
||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| | ||
Sbjct 1916 AGCAAAAGGCACATTGATGCAAATGATTGGAGCTGACTGGATAAGTTCAGATAAGCGGGA 1975
Query 1938 AGATGATCTTGGTGGACGAGTAGGTGGTCTAGTTCAAGAATTTGCAGCGAAAGGCGGTCC 1997
||||||||||||||||||| |||||||||||||||| |||| ||||||||||| ||||
Sbjct 1976 AGATGATCTTGGTGGACGAATAGGTGGTCTAGTTCAGGAATACGCAGCGAAAGGAAGTCC 2035
Query 1998 CGAGTTTTTCTTCATTGTAAACATACAGGTCCCCGGTTCGGCTATGTACTCTCTAGCATT 2057
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2036 CGAGTTTTTCTTCATTGTAAACATACAGGTCCCTGGTTCGGCTATGTACAGTCTAGCATT 2095
Query 2058 GTACTATATGCTGAAAACTCCATTGGAAGAGCATCCTTTGTTAGAGAGTTTTGTGAATGG 2117
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2096 GTACTATATGCTGAAAACACCATTGGAGGAGCATCCTTTGTTAGAGAGTTTTGTGAATGG 2155
Query 2118 TGACGATGCTTATCGCAACTCGCGCTTTAAACTAATCCCTCATATCTCCAAAGGTTCGTG 2177
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2156 TGACGATGCTTATCGAAACTCGCGCTTTAAACTCATCCCTCATATCTCCAAAGGTTCATG 2215
Query 2178 GATTGTGAAACAAAGTGTGGGAAAGAAGGCTTGCTTGGTTGGTCAGGCT-CTTGAAGTTC 2236
|||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 2216 GATTGTGAAACAAAGTGTTGGAAAGAAGGCTTGCTTGGTTGGTCAGG-TACTTGAAGTTT 2274
Query 2237 GTTACACCCGCGGCAAGAACTACTTAGAGCTTGACATTGATGTTGGGTCTTCAACTGTTG 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 GTTACACCCGCGGCAAGAACTACTTAGAGCTTGACATTGATGTTGGGTCTTCAACTGTTG 2334
Query 2297 CAAGAGGTGTAACCAATCTTGTTCTTGGGTATCTCAACAATTTGGTTATAGAAATGGCAT 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2335 CAAGAGGTGTAACCAATCTTGTTCTTGGGTATCTCAACAATTTGGTTATAGAAATGGCAT 2394
Query 2357 TTTTGATACAGGCAAATACAGCAGAGGAACTACCAGAACTGCTACTAGGAACATGTCGGC 2416
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 2395 TTTTGATACAGGCAAATACAGTAGAGGAACTACCAGAACTGCTACTAGGAACTTGTCGGC 2454
Query 2417 TCAATTATCTTGATGTCTCAAAATCTGTAAAAGAAAGATGAGACATCCCTAAGAACAAAC 2476
|||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 2455 TCAATTATCTTGATGTTTCAAAATCTGTAAAAGAAAGGTGAGACATCCTTAACAACAAAC 2514
Query 2477 AATATTGCAGGAGCAGAGGATATTTTCGATACTTTGTTTCTTTGTAAAAGCTGTGTTT-- 2534
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2515 ACTATTGCAGGAGCAGAGGATATTTTCGATT-TTTGTTTCTTTGTAAAAGCTGTGTTTTA 2573
Query 2535 --CT-TG-TT------ATGTCAACTCGTTTTCACACTCAAAACTGATGTATAGTCAGGAT 2584
|| || || ||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 2574 AACTGTGATTCTTGTTATGTCAACTCGTTTTTACACTCAAA-CTGATGTATAGTCAGGAT 2632
Query 2585 CAGTAGTTTGGTTCTTTGTGTTATCTGATCCAAGATTGAATAAATAAACTTGTTGAT 2641
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2633 CAGTAGTTTGGTTCTCTGTGTTGTCTGATCCAAGATTGAATAAATAAACTTGTTGAT 2689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131136389002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5