BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485891
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54810.2 | Symbols: BME3-ZF, BME3, GATA8 | Plant-specific GA... 2442 0.0
> AT3G54810.2 | Symbols: BME3-ZF, BME3, GATA8 | Plant-specific
GATA-type zinc finger transcription factor family protein |
chr3:20296232-20298691 FORWARD LENGTH=1620
Length=1620
Score = 2442 bits (1322), Expect = 0.0
Identities = 1530/1623 (94%), Gaps = 43/1623 (3%)
Strand=Plus/Plus
Query 1 tttttttCCCAATCAATCACTCTTCACTTCTCCCCACTCCTTGCTCCtttttttttt-cc 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 16 TTTTTTTCCCAATCAATCACTCTTCACTTCTCCCCACTCCTTACTCCTTTTTTTTTTGCC 75
Query 60 tttctaagcaatctctctcttcttcttatattctcaaatttgattcttttctctctctct 119
|||||||||||||||||||||||||||||||||||| ||||||||| || | | |||
Sbjct 76 TTTCTAAGCAATCTCTCTCTTCTTCTTATATTCTCATATTTGATTC----CT-T-T-TCT 128
Query 120 ctctcATACGATCTGCACA-C-C-ACTAAGAACAACAGAGCTAGCTAGAGTTGCAATAAT 176
||||||||||||||||||| | | |||||||||||||||||||| ||| ||||||||||
Sbjct 129 CTCTCATACGATCTGCACACCACTACTAAGAACAACAGAGCTAGAGAGACTTGCAATAAT 188
Query 177 TGTAAAAGATGATTGG-ACAAAGCTTCCCGGAGGATCTTGATTGTGGCAACTTCTTTGAC 235
||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 189 TGTAAAACATGATTGGAAC-AAGCTTCCCCGAGGATCTTGATTGTGGCAACTTCTTTGAC 247
Query 236 AACATGGATGATCTCATGGACTTTCCCGGTGGAGATATCGATGTCGGTTTCGGCATAGGT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 AACATGGATGATCTCATGGACTTTCCCGGTGGAGATATCGATGTCGGTTTCGGCATAGGT 307
Query 296 GACTCCGACTCTTTTCCTACAATCTGGACCACTCATCACGACACGTGGCCCGCCGCTTCT 355
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 308 GACTCCGACTCTTTCCCTACCATCTGGACCACTCATCACGACACGTGGCCTGCCGCTTCT 367
Query 356 GATCCTCTCTTCTCTTCCAACACCAACTCTGATTCATCACCTGAGCTCTATGTTCCGTTT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GATCCTCTCTTCTCTTCCAACACCAACTCTGATTCATCACCTGAGCTCTATGTTCCGTTT 427
Query 416 GAGGACATTGTTAAGGTGGAAAGACCACCAACCTTTGTAGAGGAATCCTTGGTTGAGAAG 475
|||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||
Sbjct 428 GAGGACATTGTTAAGGTGGAAAGACCTCCAAGCTTTGTAGAGGAAACATTGGTTGAGAAG 487
Query 476 AAGGAAGATTCGTTTTCGACAAACACGGATTCATCATCTTCTCATAGCCAATTCAGGAGC 535
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 488 AAGGAAGATTCGTTTTCGACAAACACTGATTCATCATCTTCTCATAGCCAATTCAGGAGC 547
Query 536 TCAAGTCCAATTTCGGTTCTCGAAAGCAGCTCCTCCTCGTCCCAAACCACCAACACAACC 595
||||||||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 548 TCAAGTCCAGTGTCGGTTCTCGAGAGCAGCTCCTCCTCGTCTCAAACCACCAACACAACC 607
Query 596 TCTCTTGTTCTCCCTGGAAAGCACGGTCGTCCACGCACAAAACGCCCTCGTCCACCGGTC 655
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 608 TCCCTTGTTCTCCCTGGAAAGCACGGTCGTCCACGCACAAAACGCCCTCGTCCACCTGTC 667
Query 656 CAGGATAAAGATAGAGTCAAAGACAATGTGTGCgggggggACTCTCGCCTCATTATTAGA 715
||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct 668 CAGGATAAAGATAGAGTCAAAGACAATGTGTGCGGTGGTGACTCGCGCCTCATCATTAGA 727
Query 716 ATCCCAAAACAGTTTCTCTCTGATCACAACAAGATGATCAATaagaagaagaagaagaag 775
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 728 ATACCGAAACAGTTTCTCTCTGATCACAACAAGATGATCAACAAGAAGAAGAAGAAGAAG 787
Query 776 GCCAAGATTACTTCTTCCTCTTCTTCGTCCGGGATTGATCTTGAAGTCAATGGAAACAAC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GCCAAGATTACTTCTTCCTCTTCTTCGTCCGGGATTGATCTTGAAGTCAATGGAAACAAC 847
Query 836 GTCGATTCGTATACTTCAGAGCAA-A---G----G-AAATGTATGCACTGTGAGGTCACC 886
|||||||||||| ||||||||||| | | | ||||||||||||||||||||||||
Sbjct 848 GTCGATTCGTATTCTTCAGAGCAATATCCGCTTAGGAAATGTATGCACTGTGAGGTCACC 907
Query 887 AAGACTCCACAATGGAGGCTTGGGCCAATGGGTCCAAAGACGCTTTGCAATGCTTGCGGC 946
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 908 AAGACTCCACAGTGGAGGCTTGGTCCAATGGGTCCAAAGACACTTTGCAATGCGTGCGGT 967
Query 947 GTGCGTTACAAATCAGGGAGGCTTTTCCCGGAGTACCGTCCAGCTGCGAGTCCAACATTT 1006
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 968 GTACGTTACAAATCAGGGAGGCTTTTCCCGGAGTACCGTCCAGCTGCTAGTCCAACATTT 1027
Query 1007 ACTCCAGCTCTTCACTCAAACTCACACAAGAAAGTGGCTGAAATGAGAAGCAAGAGATGC 1066
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1028 ACTCCAGCTCTTCACTCAAACTCACACAAGAAAGTGGCTGAAATGAGAAACAAGAGATGC 1087
Query 1067 AGTGATGGTAGCTACATAACCGAAGAGAATGATCTGCAAGGACTGATTCCGAACAATGCC 1126
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1088 AGTGATGGTAGCTACATAACCGAAGAGAATGATCTGCAAGGGCTGATTCCGAACAATGCC 1147
Query 1127 TACATTGGCGTAGACTAAAACCA-AGAAAAGAAGATTCGATTTCCATGCGTTGAAGTGAT 1185
||||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||
Sbjct 1148 TACATTGGCGTAGACTAAAAC-ATAGAGAAGATGATTCGATTTCCATGCGTTGAAGTGAT 1206
Query 1186 TAGATATGCCAGGAGTAGGAAAGAGTCAGTGAGCAGAAAAGTTTT-AGCTTTAGAAGAGA 1244
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1207 TAGATATGCCAGGAGTAGGAAAGAGTCAGTGAGAAGAAAAGTTTTTAGCTTTAGAAGAGA 1266
Query 1245 TGAATGAAGAGAACAATCAATTGG-GGGATTAAAAAGTTAGATGAGAATTGATTGTGTTT 1303
|||| ||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1267 TGAAGGAAGAGAGCAATCAATTGGAGGGATTAAAA-GTTAGATGAGAATTGATTGTGTTT 1325
Query 1304 GTATT-TT--GTATTTTTAGTGTGAATGGGCAAAAA-CTCTTGAAACAGAGGAAAAGTAA 1359
||||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1326 GTATTATTTTGTATTTGTAGTGTGAATGGGCAAAAAACTCTTGAAACAGAGGAAAAGTAA 1385
Query 1360 GTTGAGGAAGAGCAGAAGATTTTGAAGACATTAGAGAATCATTAGGTGTTGAGTATTACA 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 GTTGAGGAAGAGCAGAAGATTTTGAAGACATTAGAGAATCATTAGGTGTTGAGTATTACA 1445
Query 1420 TTAAAtcttcctctccttcttttgttctttcaattctttgtatttttcttgtgaggattc 1479
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1446 TTAAATCTTCCTCTTCTTCTTTTGTTCTTTCAATTCTTTGTATTTTTATTGTGAGGATTC 1505
Query 1480 tcttttctttt-tttttttt---gtagttgatttgtttagctaaagaattctttctttct 1535
|||||| |||| |||||||| ||||||||||||||||||||||| ||||||| ||| |
Sbjct 1506 TCTTTTTTTTTCTTTTTTTTTTTGTAGTTGATTTGTTTAGCTAAAGGATTCTTT-TTT-T 1563
Query 1536 ttttttttgtttttgTTAAAATCCAATGTTATAAATTGTTAATTATTAAATTGTTTCCTT 1595
|| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1564 TT------GTTTTTGTTAAAATCCAATGTTATAAATTGTTAATTATTAAATGGTTTTCTT 1617
Query 1596 ACC 1598
|||
Sbjct 1618 ACC 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78915256740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5