BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485893
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54820.1 | Symbols: PIP2D, PIP2;5 | plasma membrane intrinsi... 1458 0.0
AT3G53420.1 | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane in... 403 2e-111
AT4G35100.1 | Symbols: PIP3, PIP3A, PIP2;7, SIMIP | plasma memb... 305 5e-82
> AT3G54820.1 | Symbols: PIP2D, PIP2;5 | plasma membrane intrinsic
protein 2;5 | chr3:20302021-20304010 FORWARD LENGTH=1229
Length=1229
Score = 1458 bits (789), Expect = 0.0
Identities = 924/985 (94%), Gaps = 25/985 (3%)
Strand=Plus/Plus
Query 1 ACCACATCAATTCTCTCATTTCTCTCTCTCACTTTCGAATATATC-T----T-------- 47
||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 1 ACCACATCAATTCTCTCATATCTCTCTCTCACTTTCGAATATATCTTAAGATAACAGAGA 60
Query 48 -ACATACTCTTAAGTTTGGTGAAGAATAAGAAGACAATGACGAAGGAAGTGGTTGGGGAT 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CACATACTCTTAAGTTTGGTGAAGAATAAGAAGACAATGACGAAGGAAGTGGTTGGTGAT 120
Query 107 AAGAGATCTTTCTCCGGAAAAGACTATCAAGACCCACCGCCTGAACCTCTGTTCGACGCT 166
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 121 AAGAGATCTTTCTCCGGGAAAGACTATCAAGACCCACCACCTGAACCTCTATTCGACGCT 180
Query 167 ACTGAGCTTGGGAAGTGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTC 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTGAGCTTGGGAAGTGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTC 240
Query 227 CTCTTCCTCTATGTCACCGTTATGACTGTCATCGGTTACAAGAGCCAGACCGATCAAGCC 286
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 CTTTTCCTCTATGTCACTATTATGACTGTCATCGGTTACAAGAGCCAGACCGATCCAGCC 300
Query 287 CTGAATCCTGACCAGTGTGCAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTTGGTGGC 346
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGAATCCTGACCAGTGTACAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTTGGTGGC 360
Query 347 ATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCTGGTGGCCATATTAATCCGGCC 406
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 ATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCTGGTGGGCATATTAATCCGGCA 420
Query 407 GTGACTTTTGGGCTGTTATTGGCTCGGAAAGTAACGTTGTTGAGAGCAGTGATGTACATG 466
||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 421 GTGACTTTTGGGCTGTTGTTGGCTCGGAAAGTGACGTTGGTGAGAGCAGTGATGTACATG 480
Query 467 GTGGCTCAGTGCCTCGGTGCCATTTGTGGTGTGGCTTTGGTCAAGTCCTTCCAGTCTGCT 526
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 GTGGCTCAGTGCCTCGGTGCCATTTGTGGTGTGGCTTTGGTCAAGGCCTTCCAGTCTGCT 540
Query 527 TACTATAACC-GCTACGGTGGCGGCGCAAACGGTCTCTCCGATGGTTATAGCATCGGCAC 585
|||| | ||| |||||||||| |||||||| |||||||| || ||||| |||||||||||
Sbjct 541 TACT-TCACCCGCTACGGTGGTGGCGCAAATGGTCTCTCTGACGGTTACAGCATCGGCAC 599
Query 586 CGGTGTTGCCGCCGAGATCATAGGTACATTCGTCTTAGTCTACACCGTCTTCTCTGCCAC 645
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGGTGTTGCAGCCGAGATCATTGGTACATTCGTCTTAGTCTACACCGTCTTCTCTGCCAC 659
Query 646 TGACCCCAAGAGGAGTGCGCGTGACTCTCACGTCCCTGTAAGCCCTGTATTGGCTCCTTT 705
||| ||||||||||||||||||||||||||||| | || |||||||||||| ||
Sbjct 660 TGATCCCAAGAGGAGTGCGCGTGACTCTCACGT---T-----CC-TGTATTGGCTCCATT 710
Query 706 ACCAATTGGATTTGCAGTGTTCATCGTTCACTTAGCTACAATCCCAATCACGGGCACTGG 765
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GCCAATTGGATTTGCAGTGTTCATCGTTCACTTAGCTACAATCCCAATCACGGGCACTGG 770
Query 766 CATTAACCCTGCAAGAAGTCTCGGAGCTGCAATCATCTACAACAAGGACAAAGCTTGGGA 825
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TATCAACCCTGCAAGAAGTCTCGGAGCTGCAATCATCTACAACAAGGACAAAGCTTGGGA 830
Query 826 TCATCATTGGATATTCTGGGTGGGTCCGTTTGCGGGTGCAGCCATTGCGGCTTTCTACCA 885
|||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 831 CCATCATTGGATATTCTGGGTGGGTCCGTTTGCTGGTGCAGCCATCGCAGCTTTCTACCA 890
Query 886 TCAGTTTGTGTTGAGGGCTGGTGCGATTAAGGCGCTCGGGTCCTTCAGGAGCCAGCCTCA 945
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 891 TCAGTTTGTGTTGAGGGCTGGTGCGATTAAGGCGCTCGGGTCTTTCAGGAGCCAGCCTCA 950
Query 946 CGTTTAACTTTGATTTTCTCTTCCC 970
|||||||||||||| | ||||||||
Sbjct 951 CGTTTAACTTTGATATGCTCTTCCC 975
Score = 202 bits (109), Expect = 7e-51
Identities = 144/159 (91%), Gaps = 9/159 (6%)
Strand=Plus/Plus
Query 1000 CGGTTGGAGCCAAGTGAC--GT-G---TAGTATCTAATTTCTAGCTTTGGTGAGGAGAGA 1053
|||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 1041 CGGTTGGAGCCAAGTGACGTGTAGTACTAGTATCTAATTTCTAGCTTTGGTGAGGAGAGA 1100
Query 1054 T-TTT-GAAGTGTCACTTGAGGGCCAACTTTAAATTGCTACTTCTATAATTAAATCTATG 1111
| ||| |||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1101 TATTTTGAAGTGTCGCTTGCGGGCCAACTTTGAATTGCTACTTCTATGATTAAATCTATG 1160
Query 1112 TCTCTACTCCTTGACTTAATAATATTGCTCTATTTATTA 1150
|||||||||||||||| | ||| ||||||||||||||||
Sbjct 1161 TCTCTACTCCTTGACT-ATTAAGATTGCTCTATTTATTA 1198
> AT3G53420.1 | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane
intrinsic protein 2A | chr3:19803655-19805713 REVERSE LENGTH=1374
Length=1374
Score = 403 bits (218), Expect = 2e-111
Identities = 583/751 (78%), Gaps = 57/751 (8%)
Strand=Plus/Plus
Query 178 GAAGTGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTCCTCTTCCTCTA 237
||||||||||||||||||||| | ||||| |||||| ||||||||||||||||| | ||
Sbjct 358 GAAGTGGTCTTTCTACAGAGCAGTTATCGCAGAGTTCGTAGCCACTCTCCTCTTCTTATA 417
Query 238 TGTCACCGTTATGACTGTCATCGGTTACAAGAGCCAGACCGATCAAGCCCTGAAT-CC-- 294
|||||||| |||| |||||||||||||||| ||| ||||| | ||| || ||
Sbjct 418 CATCACCGTTTTGACAGTCATCGGTTACAAGATTCAGTCCGAT--A---CTG-ATGCCGG 471
Query 295 TGAC-CAG--TG-TGCAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTTGGTGGCATGA 350
|| | || || || || ||||| |||| |||||||| |||||||||||||| ||||
Sbjct 472 TGGCGTAGATTGCGGC-GGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTATGA 530
Query 351 TCTTCATCCTCGTCTACTGCACCGCCGGCATCTCTGGTGGCCATATTAATCCGGCCGTGA 410
|||||||||||||||||||||||||||| ||||||||||| || ||||| || || ||||
Sbjct 531 TCTTCATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGA 590
Query 411 CTTTTGGGCTGTTATTGGCTCGGAAAGTAACGTTGT-TGAGAGCAGTGAT-GTACATGGT 468
| |||||||| || ||||| || ||||| |||| | || || | || |||||| |
Sbjct 591 CATTTGGGCTATTCTTGGCACGTAAAGTGTCGTTACCT-AGGGCCCT-ATTGTACATAAT 648
Query 469 GGCTCAGTGCCTCGGTGCCATTTGTGGTGT-GGCTTTGGTCAA-GTCCTTCCA--GTCTG 524
|||||||| | ||||| |||||||| || || |||| |||| | ||||||| | ||
Sbjct 649 CGCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGTTTTG-TCAAAG-CCTTCCAAAG-CT- 704
Query 525 CTTACTATAACCGCTACGGTGGCGGCGCAAACGGTCTCT--CCGATGGTTATAGCATC-G 581
||||||| | ||| ||||| || || || ||| ||||| ||||||| || |||| | |
Sbjct 705 CTTACTACACCCGTTACGGAGGTGGAGCCAAC--TCTCTAGCCGATGGCTACAGCA-CAG 761
Query 582 GCACCGGTGTTGCCGCCGAGATCATAGGTACATTCGT-CTTAGTCTACACCGTCTTCTCT 640
| |||||| | ||||| |||||||| ||||| ||||| ||| ||||||||||||||||||
Sbjct 762 GGACCGGTCTAGCCGCAGAGATCATTGGTACTTTCGTTCTT-GTCTACACCGTCTTCTCT 820
Query 641 GCCACTGACCCCAAGAGG-AGTGCGC-GTGACTCTCACGTCCCTGTAAGCCCTGTATTGG 698
|||||||||||||| | | ||||| | | ||||| ||||| || | | ||| | ||
Sbjct 821 GCCACTGACCCCAA-ACGTAGTGC-CAGAGACTCCCACGTTCC-G---G---TGT-T-GG 869
Query 699 CTCCT-TTACCAATTGGATTTGCAGTGTTCATCGTTCACTTAGCTACAAT-CCCAATCAC 756
| || || ||||| |||||||| |||||||| || || || ||||| || |||| | ||
Sbjct 870 CGCCACTT-CCAATCGGATTTGCCGTGTTCATGGTACATTTGGCTACCATTCCCATT-AC 927
Query 757 GGGCACTGGCATTAACCCTGCAAGAAGTCTCGGAGCTGCAATCATCTACAACAAG-GACA 815
|| || || |||||||| ||||| ||| |||||||||| | |||||||||||| | ||
Sbjct 928 CGGAACCGGAATTAACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTACAACAAGAG-CA 986
Query 816 AAGCT-TGGGATCATCATTGGATATTCTGGGTGGGTCCGTTTGCGGGTGCAGCCATTGCG 874
| || |||||| | || |||||||| ||||| || || || || || || || ||
Sbjct 987 A-GCCATGGGATGACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCT 1045
Query 875 GCTTTCTACCATCAGTTTGTGT-TGAGGGCT 904
|| |||||||| || || || | |||| |||
Sbjct 1046 GCATTCTACCACCAATTCGT-TCTGAGAGCT 1075
> AT4G35100.1 | Symbols: PIP3, PIP3A, PIP2;7, SIMIP | plasma membrane
intrinsic protein 3 | chr4:16708598-16710248 FORWARD
LENGTH=1207
Length=1207
Score = 305 bits (165), Expect = 5e-82
Identities = 522/687 (76%), Gaps = 53/687 (8%)
Strand=Plus/Plus
Query 182 TGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTCCTCTTCCTCTATGTC 241
||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||
Sbjct 174 TGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATCGCTACACTCCTCTTCCTCTACGTC 233
Query 242 ACCGTTA-TGACTGTCATCGGTTACAAGAGCCAGACCGATCAAGCCCTGAATCCTGACCA 300
||||| | ||||||||||| |||||| || | | || || | ||||
Sbjct 234 ACCGTCGCT-ACTGTCATCGGCCACAAGA---AG-C--A--AA-CCG-G--TCCTT---- 276
Query 301 GTGTGCAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTT-GGTGGCATGATCTTCATCC 359
||| | |||||||| | ||||||||||| ||||| ||| ||||| ||||||||| |||
Sbjct 277 GTGA-C-GGCGTTGGTTTACTTGGTATCGCTTGGGC-TTTCGGTGGTATGATCTTCGTCC 333
Query 360 TCGTCTACTGCACCGCCGGCATCTCTGGTGGCCATATTAATCCGGCCGTGACTTTTGGGC 419
||||||||||||||||||| ||||||||||| || ||||| || || |||||||| || |
Sbjct 334 TCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCTGTGACTTTCGGTC 393
Query 420 TGTTATTGGCTCGGAAAGTAACGTTGTTGAGAGCAGT-GATGTACATGGTGGCTCAGTGC 478
|||| ||||| || || || | ||| || |||| | | | |||||| | ||||||||
Sbjct 394 TGTTCTTGGCCCGTAAGGTCTCTTTGGTGCGAGCTCTTGGT-TACATGATAGCTCAGTGT 452
Query 479 CTCGGTGCCATTTGTGGTGTGGCTTTGGTCAA-GTCCTTCCA-GT---CTGCTTACTATA 533
|| || |||||||||||||||| ||| || || | | ||| | | || ||||| | |
Sbjct 453 CTTGGAGCCATTTGTGGTGTGGGTTTCGTGAAAG-CTTTC-ATGAAAACTCCTTACAACA 510
Query 534 ACCGCTACGGTGGCGGCGC-AA-ACGGTCTCTCCGATGGTTATAGCATCGGCACCGGTGT 591
| || ||||| || || || || || || || ||||| |||| || || | | |
Sbjct 511 -CT-CTT-GGTGGAGGAGCTAACACCGTAGCT--GACGGTTACAGCAAAGGAACTGCTCT 565
Query 592 TGCCGCCGAGATCATAGGTACATTCGTC-TTAGTCTACACCGTCTTCTCTGCCACTGACC 650
| || ||||| || || || |||||| || || |||||||| |||||||| |||||||
Sbjct 566 CGGAGCTGAGATTATTGGAACTTTCGTCCTT-GTTTACACCGTTTTCTCTGCAACTGACC 624
Query 651 CCAAGAGGAGTGCGCGTGACTCTCACGTCCCTGTAAGCCCTGTATTGGCTCCT-TTACCA 709
| ||||| || || |||||||||||| |||| || | | | |||||| || |||
Sbjct 625 CTAAGAGAAGCGCTCGTGACTCTCACATCCCCGT------T-T-T-GGCTCCACTT-CCA 674
Query 710 ATTGGATTTGCAGTGTTCATCGTTCACTTAGCTACAATCCCAATCACGGGCACTGGCATT 769
||||||||||| |||||||| || || || ||||| ||||| || || || ||||| ||
Sbjct 675 ATTGGATTTGCTGTGTTCATGGTGCATTTGGCTACTATCCCCATTACTGGAACTGGTATC 734
Query 770 AACCCTGCAAGAAG-TCTCGGAGCTGCAATCATCTACAACAAGGACAAAGCTTGGGATCA 828
||||| || ||||| | | || ||||| | ||||||||||| || || || |||||| |
Sbjct 735 AACCCAGCTAGAAGCTTT-GGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGA 793
Query 829 TCATTGGATATTCTGGGTGGGTCCGTT 855
|| ||||| || ||||| ||||||||
Sbjct 794 CCAATGGATCTTTTGGGTTGGTCCGTT 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56425412580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5