BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485899
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54860.2 | Symbols: ATVPS33, VPS33 | Sec1/munc18-like (SM) p... 1711 0.0
> AT3G54860.2 | Symbols: ATVPS33, VPS33 | Sec1/munc18-like (SM)
proteins superfamily | chr3:20324090-20329917 REVERSE LENGTH=2099
Length=2099
Score = 1711 bits (926), Expect = 0.0
Identities = 1007/1046 (96%), Gaps = 6/1046 (1%)
Strand=Plus/Plus
Query 889 TGATAAGTTGTTCAAGGAGACAAGGGATCTCAACTTTGAAGTCGTTGTACAGGTTCTACG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TGATAAGTTGTTCAAGGAGACAAGGGATCTCAACTTTGAAGTCGTTGTACAGGTTCTACG 1035
Query 949 TCAGAAGGCAA-CATCCATGAAGGAGGACTACACGGAAATTAATTCTACCCAGACAGTTT 1007
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 TCAGAAGGCAATGA-CCATGAAGGAGGACTACACGGAAATTAATTCTACCCAGACAGTTT 1094
Query 1008 CTGAGCTAAAGGACTTTGTTAAGAAGCTTAACTCTCTACCAGAGATGACAAGGCACATAC 1067
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1095 CTGAGCTGAAGGACTTTGTTAAGAAGCTTAACTCACTACCAGAGATGACAAGGCACATAC 1154
Query 1068 ATCTTGCCCAGCACCTGACAACGTTCACATCCAAGCAATCATTTCTTTCGCAACTTGATA 1127
|||||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||
Sbjct 1155 ATCTTGCCCAGCACCTAACGACGTTCACATCCAAGCAATCATTTAATTCTCAACTTGATA 1214
Query 1128 TGGAACAAACACTTGTTGAGGCAGAAAGTTATGACATATGCTATGAGTACATAGAAGAGA 1187
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1215 TGGAACAAACACTTGTTGAGGCAGAAAATTATGACATATGCTATGAGTACATAGAAGAGA 1274
Query 1188 TGATCCATAAACAGGAGCATCTCACTAATGTCTTACGTCTATTAGTCTTATTTTCTGTTA 1247
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TGATCCATAAACAGGAGCCTCTCACTAATGTCTTACGTCTATTAGTCTTATTTTCTGTTA 1334
Query 1248 CAAACTCAGGGTTACCAAAGAAGCAATTTGATTATATAAGAATGGAACTACTCCACAGTT 1307
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1335 CAAACTCAGGGTTACCGAAGAAACAATTTGATTATATAAGAATGGAACTACTCCACAGTT 1394
Query 1308 ATGGGTTTGAGCATGTGGTCACACTGAACAACTTGGAAAAAGCAGGATTGTTGAAGAAGC 1367
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 ATGGGTTTGAGCATGTGGTTACACTGAACAACTTGGAAAAAGCAGGATTGTTGAAGAAGC 1454
Query 1368 AGGAGTTTAAAAGCAACTGGCTGACAGTGAAACGTACACTGCAACTTATCGTAGAAGACA 1427
|||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||
Sbjct 1455 AGGAGTTTAAAAGCAACTGGCTGACAGTGAAACGGACACTGAAACTTATTGTCGAAGACA 1514
Query 1428 CTGATACGTCTAGGCCTAACGATATCGCTTATGTCTATTCTGGATATGCTCCTCTAAGCA 1487
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1515 CTGATACGTCTAGGCCTAACGATATCGCTTATGTCTATTCGGGATATGCTCCTCTTAGCA 1574
Query 1488 TTCGTCTTATCCAACAAGCTATTCATTCGGGATGGCGTCCTGTGGAGGACATTTTGAAGC 1547
|||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||
Sbjct 1575 TTCGTCTTATCCAACAAGCTATTCATTCTGGATGGCGTCCTATGGAAGACATTTTGAAGC 1634
Query 1548 TGTTACCAGGACCCCATCTGGAGACTAAAAGAAGTGGATTCCCAAGCAGTCCATCAGTTG 1607
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1635 TGTTACCAGGACCCCATCTGGAGACTAAAAGAAGTGGATTCCCAAGTAGTCCATCAGTTG 1694
Query 1608 ATTCATTGCACGGAGCTTCAAATGGGGTTGCTGATGGAAGACGCTCAATTGTTCTTGTTG 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 ATTCATTGCACGGAGCTTCAAATGGGGTTGCTGATGGAAGACGCTCAATTGTTCTTGTTG 1754
Query 1668 TCTTCATTGGTGGTGTAACATTTGCTGAAATCTCTGCTTTACGGTATCTCGCCTCTAAGG 1727
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 TCTTCATTGGAGGTGTAACATTTGCTGAAATCTCTGCTTTACGGTATCTCGCCTCTAAGG 1814
Query 1728 AAGAAATGGCTTATGATTTGATTATTGCCACAACAAAAATCGTCAATGGCGCAACGTTGA 1787
||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1815 AAGGAATGGCTTATGATTTGATTGTTGCCACAACAAAAATCGTCAACGGCGCAACGTTGA 1874
Query 1788 TAGAAACATTCATGGAAAAACTAGGCTGATCCGTAAACAGAGCGTTATGTTTCATCTAT- 1846
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 1875 TAGAAACATTCATGGAAAAACTAGGCTGATCCGTAAACTGAGCGTTATGTT-CATCTTTT 1933
Query 1847 CTCTTTCCAGTGtgttttatttgttcatttttttgtatgtctttgtttatttttCTGGAT 1906
||||||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1934 CTCTTTCGAGTGTGTTT-ATTAATTCATTTTTT-GTATGTCTTTGTTTATTTTTCTGGAT 1991
Query 1907 CTTTGTGGTTGCAGAGTGAATGGTAT 1932
| ||||||||||||||||||||||||
Sbjct 1992 CATTGTGGTTGCAGAGTGAATGGTAT 2017
Score = 1452 bits (786), Expect = 0.0
Identities = 856/890 (96%), Gaps = 4/890 (0%)
Strand=Plus/Plus
Query 1 AAACGGAGAAAGGTCGATCATCTGTTGTTCATCGTCCATGGCGCAGATCCCCAGCTTGGA 60
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 40 AAACGGAGAAAGGTCGATCATCTCTTGATCATCGTCCATGGCGCAGATCCCCAGCTTGGA 99
Query 61 AAATGCTCCTCTCAATCTCAAATCCATTAGGGACAAGTCTGAGAGGGAGCTCGTAAACTT 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 100 GAATGCTCCTCTCAATCTGAAATCCATTAGGGACAAGTCTGAGAGGGAGCTCGTAAACTT 159
Query 121 GCTTAAAGACATTCGTGGAACTAAGTGTTTGGTTATTGATCCAAAGCTCAGTGGTTCAGT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 GCTTAAAGACGTTCGTGGAACTAAGTGTTTGGTTATTGATCCAAAGCTCAGTGGTTCAGT 219
Query 181 CTCATTGATCATCCAGACGTCTAAGCTGAAGGAACTTGGTTTGGAGTTACGACATCTTAC 240
|||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 220 CTCATTGATCATCCCGACCTCTAAGCTTAAGGAACTTGGTTTGGAGTTACGACATCTTAC 279
Query 241 TGCGGAACCAGTTCAGACTGAATGCACAAAAGTGATTTATCTTGTTCGCTCTCAACTCA- 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 280 TGCGGAACCAGTTCAGACTGAATGCACAAAAGTGGTTTATCTTGTTCGCTCTCAACTTAG 339
Query 300 CTTTTATGAAATTCATAGCTTCTCACATTCAGAATGATATTTCAAAAGCGATTCAGAGAG 359
| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 340 C-TTTATGAAATTCATAGCGTCTCACATTCAGAATGATATTGCAAAAGCGATTCAGAGAG 398
Query 360 ACTACTATGTTTACTTTGTTCCTCGTAGGTCAGTTGCGTGTGAGAAGATTCTTGAGCAAG 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 399 ACTACTATGTTTACTTTGTTCCTCGTAGGTCTGTTGCGTGTGAGAAGATTCTTGAGCAAG 458
Query 420 AAAAAGTGCATAACCTGGTTACTGTGAAGGAGTTTACCC-TGTATATGGTTCCACTAGAT 478
|||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||
Sbjct 459 AAAAAGTGCATAACCTGGTTACAGTGAAAGAGTTT-CCCTTGTATATGGTTCCACTAGAT 517
Query 479 GAGGATGTTATTTCATTTGAGCTCGAGCTCTCTGAAAAGGATTGCCTTGTGGATGGTGAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GAGGATGTTATTTCATTTGAGCTCGAGCTCTCTGAAAAGGATTGCCTTGTGGATGGTGAT 577
Query 539 GTTAGCTCACTTTGGCATGTCGCAAAAGCCATCCATGAACTTGAGTTTTCTTTTGGAGTT 598
|||||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 578 GTTAGCTCCCTTTGGCATATCGCAAAAGCCATACATGAACTTGAGTTCTCTTTTGGAGTT 637
Query 599 ATATCGAAAGTGAGGGCCAAGGGCAAAGCATCAGTTCGTGTTGCTGATATACTAAACCGC 658
||||| ||| ||||||| |||||||||||||||||||||||||| || || |||||||||
Sbjct 638 ATATCAAAAATGAGGGCAAAGGGCAAAGCATCAGTTCGTGTTGCAGACATTCTAAACCGC 697
Query 659 ATGCAAGTGGAGGAACCTGTCAATTCAAATGATGTGGGAAGGCCTGAAGTGGATACACTC 718
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 698 ATGCAAGTGGAGGAACCTGTCAATTCGAATGATGTGGGAAGGCCTGAAGTGGATACACTC 757
Query 719 ATTCTATTGGATAGAGAAGTTGACATGGTTACTCCTATGTGTTCCCAGTTAACTTATGAG 778
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 ATTCTATTGGATAGAGAGGTTGACATGGTTACTCCTATGTGTTCCCAGTTAACTTATGAG 817
Query 779 GGACTGATAGACGAGTTTTTGCATATCAGCAATGGAGCTGTCGAGGTCGACTCATCTGTG 838
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GGACTAATAGACGAGATTTTGCATATCAGCAATGGAGCTGTCGAGGTCGACTCATCTGTG 877
Query 839 ATGGGTGCTCAGCAAGAGGGAAAAAAGATGAAAGTTCCCCTTAATTCAAG 888
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 878 ATGGGTGCTCAGCAGGAGGGAAAAAAGATGAAAGTTCCCCTTAATTCAAG 927
Score = 58.4 bits (31), Expect = 3e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1932 TTGAGATACAGCGTGATTATACAAATTCAAT 1962
|||||||||||||||||||||||||||||||
Sbjct 2045 TTGAGATACAGCGTGATTATACAAATTCAAT 2075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97188255120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5